Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10445

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,213,810	+		DZA65_RS10440	0.30	-1.4
2,213,810	+		DZA65_RS10440	0.30	+1.8
2,213,810	+		DZA65_RS10440	0.30	+0.3
2,213,810	+		DZA65_RS10440	0.30	-0.7
2,213,810	+		DZA65_RS10440	0.30	+1.3
2,213,810	+		DZA65_RS10440	0.30	-0.1
2,213,810	+		DZA65_RS10440	0.30	-2.7
2,213,810	+		DZA65_RS10440	0.30	-0.9
2,213,810	+				-0.1
2,213,811	-		DZA65_RS10440	0.30	-0.2
2,213,811	-		DZA65_RS10440	0.30	+1.7
2,213,925	+		DZA65_RS10440	0.38	-1.3
2,213,925	+		DZA65_RS10440	0.38	-1.3
2,213,925	+		DZA65_RS10440	0.38	-1.7
2,213,925	+		DZA65_RS10440	0.38	+0.6
2,213,926	-		DZA65_RS10440	0.38	+0.6
2,213,926	-		DZA65_RS10440	0.38	-0.5
2,213,926	-		DZA65_RS10440	0.38	+0.3
2,213,926	-		DZA65_RS10440	0.38	+0.4
2,213,926	-		DZA65_RS10440	0.38	+1.8
2,213,926	-		DZA65_RS10440	0.38	+0.3
2,213,926	-		DZA65_RS10440	0.38	-0.4
2,213,926	-		DZA65_RS10440	0.38	+2.1
2,214,236	+		DZA65_RS10440	0.60	+0.8
2,214,236	+		DZA65_RS10440	0.60	+0.8
2,214,237	-		DZA65_RS10440	0.61	+0.8
2,214,237	-		DZA65_RS10440	0.61	-0.2
2,214,237	-		DZA65_RS10440	0.61	+0.5
2,214,240	+		DZA65_RS10440	0.61	+2.2
2,214,240	+		DZA65_RS10440	0.61	+0.6
2,214,240	+		DZA65_RS10440	0.61	+0.3
2,214,241	-		DZA65_RS10440	0.61	-0.9
2,214,291	+				+0.3
2,214,291	+		DZA65_RS10440	0.64	-1.3
2,214,291	+		DZA65_RS10440	0.64	-0.2
2,214,291	+				-1.7
2,214,292	-		DZA65_RS10440	0.65	+2.3
2,214,292	-		DZA65_RS10440	0.65	+1.1
2,214,292	-		DZA65_RS10440	0.65	+1.0
2,214,292	-		DZA65_RS10440	0.65	-2.7
2,214,292	-		DZA65_RS10440	0.65	-0.7
2,214,394	-		DZA65_RS10440	0.72	-1.3
2,214,459	-		DZA65_RS10440	0.77	-0.3
2,214,535	+		DZA65_RS10440	0.82	+0.1
2,214,535	+		DZA65_RS10440	0.82	-0.8
2,214,535	+		DZA65_RS10440	0.82	-0.9
2,214,536	-		DZA65_RS10440	0.82	+0.8
2,214,578	+		DZA65_RS10440	0.85	+0.3
2,214,637	+		DZA65_RS10440	0.90	+0.4
2,214,637	+		DZA65_RS10440	0.90	+0.6
2,214,638	-		DZA65_RS10440	0.90	-0.3
2,214,638	-		DZA65_RS10440	0.90	+0.3
2,214,638	-		DZA65_RS10440	0.90	-0.4
2,214,770	+				-2.3
2,214,771	-				-0.5
2,214,771	-				+1.0
2,214,799	+				-0.6
2,214,799	+				+0.3
2,214,799	+				+0.6
2,214,800	-				-0.2
2,214,906	-		DZA65_RS10445	0.47	+0.6
2,214,938	+		DZA65_RS10445	0.59	+0.3
2,214,938	+		DZA65_RS10445	0.59	+0.8
2,214,938	+		DZA65_RS10445	0.59	-0.0
2,214,938	+		DZA65_RS10445	0.59	+1.3
2,214,938	+				+1.8
2,214,938	+		DZA65_RS10445	0.59	+0.2
2,214,938	+		DZA65_RS10445	0.59	-1.3
2,214,938	+		DZA65_RS10445	0.59	-1.7
2,214,939	-		DZA65_RS10445	0.59	+0.4
2,214,939	-		DZA65_RS10445	0.59	-1.3
2,214,939	-		DZA65_RS10445	0.59	+1.4
2,214,939	-		DZA65_RS10445	0.59	+0.3
2,214,939	-		DZA65_RS10445	0.59	-1.6
2,214,939	-		DZA65_RS10445	0.59	-1.7
2,214,939	-		DZA65_RS10445	0.59	-1.1
2,214,939	-		DZA65_RS10445	0.59	-2.1
2,214,939	-		DZA65_RS10445	0.59	-0.9
2,214,939	-		DZA65_RS10445	0.59	+0.8
2,214,991	+		DZA65_RS10445	0.78	+0.6
2,214,992	-		DZA65_RS10445	0.78	+1.4
2,215,002	-		DZA65_RS10445	0.82	-0.7
2,215,002	-		DZA65_RS10445	0.82	+0.6
2,215,002	-		DZA65_RS10445	0.82	+0.8
2,215,078	+				+1.0
2,215,079	-				-0.7
2,215,079	-				+0.7
2,215,127	-				+0.3
2,215,265	+				+0.5
2,215,265	+				-1.6
2,215,265	+				+0.3
2,215,265	+				-1.7
2,215,265	+				-0.7
2,215,265	+				-1.0
2,215,265	+				-0.7
2,215,265	+				+0.4
2,215,265	+				+0.2
2,215,265	+				-0.2
2,215,265	+				+0.3
2,215,265	+				-0.6
2,215,265	+				+0.1
2,215,265	+				-0.7
2,215,265	+				-0.3
2,215,265	+				+1.1
2,215,266	-				-0.7
2,215,266	-				-1.3
2,215,266	-				-2.6
2,215,266	-				+0.4
2,215,266	-				+1.0
2,215,266	-				-1.3
2,215,266	-				+0.3
2,215,266	-				+0.3
2,215,266	-				+0.4
2,215,267	+				+1.2
2,215,267	+				-1.0
2,215,267	+				+2.6
2,215,267	+				-2.4
2,215,267	+				+0.8
2,215,267	+				+0.3
2,215,268	-				+0.5
2,215,268	-				+0.0
2,215,268	-				+0.9
2,215,268	-				-0.3
2,215,298	+				+1.5
2,215,298	+				-0.7
2,215,298	+				+2.1
2,215,299	-				-0.2
2,215,304	+				+2.3
2,215,305	-				-3.0
2,215,305	-				+1.3
2,215,305	-				-1.5
2,215,559	+		DZA65_RS10450	0.13	-0.2
2,215,560	-		DZA65_RS10450	0.13	+0.2
2,215,587	+		DZA65_RS10450	0.13	+0.6
2,215,662	+		DZA65_RS10450	0.15	+0.3
2,215,662	+		DZA65_RS10450	0.15	+1.7
2,215,662	+		DZA65_RS10450	0.15	-1.1
2,215,662	+		DZA65_RS10450	0.15	+0.3
2,215,662	+		DZA65_RS10450	0.15	-1.6
2,215,662	+		DZA65_RS10450	0.15	+0.1
2,215,662	+		DZA65_RS10450	0.15	-1.3
2,215,662	+		DZA65_RS10450	0.15	+1.8
2,215,662	+		DZA65_RS10450	0.15	-1.2
2,215,662	+		DZA65_RS10450	0.15	+0.1
2,215,662	+		DZA65_RS10450	0.15	+0.7
2,215,662	+		DZA65_RS10450	0.15	+0.3
2,215,662	+		DZA65_RS10450	0.15	+0.8
2,215,662	+		DZA65_RS10450	0.15	+0.3
2,215,662	+		DZA65_RS10450	0.15	-0.9
2,215,662	+		DZA65_RS10450	0.15	+1.0
2,215,662	+		DZA65_RS10450	0.15	+0.1
2,215,662	+		DZA65_RS10450	0.15	-0.0
2,215,663	-		DZA65_RS10450	0.15	+0.4
2,215,663	-		DZA65_RS10450	0.15	+0.5
2,215,663	-		DZA65_RS10450	0.15	+0.9
2,215,663	-		DZA65_RS10450	0.15	-1.1
2,215,663	-		DZA65_RS10450	0.15	+0.1
2,215,663	-		DZA65_RS10450	0.15	-3.7
2,215,663	-		DZA65_RS10450	0.15	+1.3
2,215,663	-		DZA65_RS10450	0.15	-2.1
2,215,663	-		DZA65_RS10450	0.15	-0.0
2,215,663	-		DZA65_RS10450	0.15	-0.7
2,215,663	-		DZA65_RS10450	0.15	+0.7
2,215,663	-		DZA65_RS10450	0.15	-0.3
2,215,663	-		DZA65_RS10450	0.15	+1.0
2,215,690	+		DZA65_RS10450	0.16	-0.4
2,215,691	-		DZA65_RS10450	0.16	-1.6
2,215,691	-		DZA65_RS10450	0.16	-0.8
2,215,868	+		DZA65_RS10450	0.21	-1.7
2,215,869	-		DZA65_RS10450	0.21	-2.9
2,215,869	-		DZA65_RS10450	0.21	-0.2
2,215,947	+		DZA65_RS10450	0.23	-0.2
2,215,948	-		DZA65_RS10450	0.23	-1.3
2,216,001	-		DZA65_RS10450	0.24	+0.4
2,216,001	-		DZA65_RS10450	0.24	-0.7
2,216,001	-		DZA65_RS10450	0.24	-2.9