Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10190

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS10185 and DZA65_RS10190 are separated by 38 nucleotidesDZA65_RS10190 and DZA65_RS10195 overlap by 4 nucleotides DZA65_RS10185: DZA65_RS10185 - tetraacyldisaccharide 4'-kinase, at 2,154,935 to 2,155,948 _RS10185 DZA65_RS10190: DZA65_RS10190 - hypothetical protein, at 2,155,987 to 2,156,169 _RS10190 DZA65_RS10195: DZA65_RS10195 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 2,156,166 to 2,156,918 _RS10195 Position (kb) 2155 2156 2157Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2156.929 kb on + strandat 2156.950 kb on + strandat 2156.951 kb on - strandat 2156.951 kb on - strandat 2156.967 kb on + strandat 2156.967 kb on + strandat 2156.967 kb on + strandat 2156.968 kb on - strandat 2156.988 kb on - strandat 2156.991 kb on - strandat 2157.004 kb on + strandat 2157.004 kb on + strandat 2157.005 kb on - strandat 2157.030 kb on - strandat 2157.074 kb on + strandat 2157.075 kb on - strandat 2157.079 kb on + strandat 2157.079 kb on + strandat 2157.079 kb on + strandat 2157.079 kb on + strandat 2157.080 kb on - strandat 2157.080 kb on - strandat 2157.080 kb on - strandat 2157.086 kb on + strandat 2157.117 kb on + strandat 2157.118 kb on - strandat 2157.138 kb on - strandat 2157.148 kb on + strandat 2157.148 kb on + strandat 2157.148 kb on + strandat 2157.148 kb on + strandat 2157.148 kb on + strandat 2157.149 kb on - strandat 2157.149 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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2,156,929 + -1.3
2,156,950 + -2.0
2,156,951 - -0.3
2,156,951 - -1.3
2,156,967 + -0.6
2,156,967 + -0.1
2,156,967 + -1.1
2,156,968 - +0.6
2,156,988 - -0.9
2,156,991 - +0.3
2,157,004 + +0.6
2,157,004 + -1.7
2,157,005 - +0.4
2,157,030 - +4.2
2,157,074 + +2.0
2,157,075 - -0.9
2,157,079 + +0.8
2,157,079 + +0.5
2,157,079 + -0.1
2,157,079 + -0.1
2,157,080 - -0.4
2,157,080 - +0.3
2,157,080 - +0.6
2,157,086 + -0.6
2,157,117 + +0.4
2,157,118 - +1.3
2,157,138 - +2.5
2,157,148 + -0.1
2,157,148 + -0.9
2,157,148 + -1.0
2,157,148 + -0.5
2,157,148 + -1.7
2,157,149 - -0.1
2,157,149 - +0.7

Or see this region's nucleotide sequence