Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS09360 and DZA65_RS09365 are separated by 54 nucleotides DZA65_RS09365 and DZA65_RS09370 are separated by 27 nucleotides DZA65_RS09370 and DZA65_RS09375 are separated by 0 nucleotides DZA65_RS09375 and DZA65_RS09380 overlap by 11 nucleotides DZA65_RS09380 and DZA65_RS09385 are separated by 359 nucleotides
DZA65_RS09360: DZA65_RS09360 - hypothetical protein, at 1,973,264 to 1,973,716
_RS09360
DZA65_RS09365: DZA65_RS09365 - hypothetical protein, at 1,973,771 to 1,974,067
_RS09365
DZA65_RS09370: DZA65_RS09370 - short-chain dehydrogenase, at 1,974,095 to 1,974,274
_RS09370
DZA65_RS09375: DZA65_RS09375 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,974,275 to 1,974,343
_RS09375
DZA65_RS09380: DZA65_RS09380 - hypothetical protein, at 1,974,333 to 1,974,578
_RS09380
DZA65_RS09385: DZA65_RS09385 - glycoside hydrolase family 3 protein, at 1,974,938 to 1,976,731
_RS09385
Position (kb) 1974
1975 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1973.287 kb on + strand at 1973.288 kb on - strand at 1973.338 kb on + strand, within DZA65_RS09360 at 1973.386 kb on + strand, within DZA65_RS09360 at 1973.439 kb on - strand, within DZA65_RS09360 at 1973.439 kb on - strand, within DZA65_RS09360 at 1973.439 kb on - strand, within DZA65_RS09360 at 1973.439 kb on - strand, within DZA65_RS09360 at 1973.488 kb on - strand, within DZA65_RS09360 at 1973.488 kb on - strand, within DZA65_RS09360 at 1973.500 kb on + strand, within DZA65_RS09360 at 1973.501 kb on - strand, within DZA65_RS09360 at 1973.501 kb on - strand, within DZA65_RS09360 at 1973.501 kb on - strand, within DZA65_RS09360 at 1973.504 kb on + strand, within DZA65_RS09360 at 1973.504 kb on + strand, within DZA65_RS09360 at 1973.534 kb on + strand, within DZA65_RS09360 at 1973.538 kb on + strand, within DZA65_RS09360 at 1973.538 kb on + strand, within DZA65_RS09360 at 1973.538 kb on + strand, within DZA65_RS09360 at 1973.538 kb on + strand, within DZA65_RS09360 at 1973.539 kb on - strand, within DZA65_RS09360 at 1973.573 kb on - strand, within DZA65_RS09360 at 1973.574 kb on + strand, within DZA65_RS09360 at 1973.714 kb on + strand at 1973.715 kb on - strand at 1973.715 kb on - strand at 1973.738 kb on - strand at 1973.756 kb on + strand at 1973.756 kb on + strand at 1973.758 kb on + strand at 1973.758 kb on + strand at 1973.758 kb on + strand at 1973.759 kb on - strand at 1973.759 kb on - strand at 1973.759 kb on - strand at 1973.759 kb on - strand at 1973.759 kb on - strand at 1973.759 kb on - strand at 1973.759 kb on - strand at 1973.781 kb on - strand at 1973.784 kb on + strand at 1973.784 kb on + strand at 1973.875 kb on + strand, within DZA65_RS09365 at 1973.875 kb on + strand, within DZA65_RS09365 at 1973.952 kb on - strand, within DZA65_RS09365 at 1973.975 kb on - strand, within DZA65_RS09365 at 1973.975 kb on - strand, within DZA65_RS09365 at 1973.977 kb on + strand, within DZA65_RS09365 at 1973.978 kb on - strand, within DZA65_RS09365 at 1974.001 kb on + strand, within DZA65_RS09365 at 1974.001 kb on + strand, within DZA65_RS09365 at 1974.007 kb on - strand, within DZA65_RS09365 at 1974.026 kb on + strand, within DZA65_RS09365 at 1974.027 kb on - strand, within DZA65_RS09365 at 1974.027 kb on - strand, within DZA65_RS09365 at 1974.035 kb on + strand, within DZA65_RS09365 at 1974.035 kb on + strand, within DZA65_RS09365 at 1974.036 kb on - strand, within DZA65_RS09365 at 1974.036 kb on - strand, within DZA65_RS09365 at 1974.036 kb on - strand, within DZA65_RS09365 at 1974.041 kb on - strand at 1974.079 kb on + strand at 1974.104 kb on - strand at 1974.137 kb on - strand, within DZA65_RS09370 at 1974.168 kb on + strand, within DZA65_RS09370 at 1974.194 kb on + strand, within DZA65_RS09370 at 1974.194 kb on + strand, within DZA65_RS09370 at 1974.194 kb on + strand, within DZA65_RS09370 at 1974.194 kb on + strand, within DZA65_RS09370 at 1974.194 kb on + strand, within DZA65_RS09370 at 1974.195 kb on - strand, within DZA65_RS09370 at 1974.195 kb on - strand, within DZA65_RS09370 at 1974.195 kb on - strand, within DZA65_RS09370 at 1974.288 kb on + strand, within DZA65_RS09375 at 1974.289 kb on - strand, within DZA65_RS09375 at 1974.289 kb on - strand, within DZA65_RS09375 at 1974.335 kb on - strand at 1974.335 kb on - strand at 1974.466 kb on + strand, within DZA65_RS09380 at 1974.466 kb on + strand, within DZA65_RS09380 at 1974.467 kb on - strand, within DZA65_RS09380 at 1974.467 kb on - strand, within DZA65_RS09380 at 1974.531 kb on + strand, within DZA65_RS09380 at 1974.532 kb on - strand, within DZA65_RS09380 at 1974.532 kb on - strand, within DZA65_RS09380 at 1974.532 kb on - strand, within DZA65_RS09380 at 1974.532 kb on - strand, within DZA65_RS09380 at 1974.532 kb on - strand, within DZA65_RS09380 at 1974.569 kb on + strand at 1974.570 kb on - strand at 1974.570 kb on - strand at 1974.583 kb on + strand at 1974.583 kb on + strand at 1974.584 kb on - strand at 1974.645 kb on + strand at 1974.646 kb on - strand at 1974.646 kb on - strand at 1974.646 kb on - strand at 1974.646 kb on - strand at 1974.666 kb on + strand at 1974.666 kb on + strand at 1974.666 kb on + strand at 1974.666 kb on + strand at 1974.667 kb on - strand at 1974.667 kb on - strand at 1974.723 kb on + strand at 1974.761 kb on + strand at 1974.761 kb on + strand at 1974.762 kb on - strand at 1974.765 kb on + strand at 1974.765 kb on + strand at 1974.765 kb on + strand at 1974.765 kb on + strand at 1974.765 kb on + strand at 1974.765 kb on + strand at 1974.766 kb on - strand at 1974.779 kb on + strand at 1974.779 kb on + strand at 1974.794 kb on - strand at 1974.814 kb on - strand at 1974.845 kb on - strand at 1974.891 kb on + strand at 1974.892 kb on - strand at 1974.892 kb on - strand at 1974.909 kb on + strand at 1974.910 kb on - strand at 1974.943 kb on + strand at 1974.957 kb on + strand at 1974.972 kb on + strand at 1974.972 kb on + strand at 1974.973 kb on - strand at 1975.014 kb on - strand at 1975.045 kb on + strand at 1975.046 kb on - strand at 1975.077 kb on + strand at 1975.077 kb on + strand at 1975.078 kb on - strand at 1975.078 kb on - strand at 1975.078 kb on - strand at 1975.121 kb on - strand, within DZA65_RS09385 at 1975.163 kb on + strand, within DZA65_RS09385 at 1975.164 kb on - strand, within DZA65_RS09385 at 1975.226 kb on - strand, within DZA65_RS09385 at 1975.253 kb on + strand, within DZA65_RS09385 at 1975.253 kb on + strand, within DZA65_RS09385 at 1975.254 kb on - strand, within DZA65_RS09385 at 1975.273 kb on + strand at 1975.274 kb on - strand, within DZA65_RS09385 at 1975.274 kb on - strand, within DZA65_RS09385
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,973,287 + +0.6 1,973,288 - -0.3 1,973,338 + DZA65_RS09360 0.16 +0.1 1,973,386 + DZA65_RS09360 0.27 +0.8 1,973,439 - DZA65_RS09360 0.39 +0.1 1,973,439 - DZA65_RS09360 0.39 +0.0 1,973,439 - DZA65_RS09360 0.39 -1.6 1,973,439 - DZA65_RS09360 0.39 +0.2 1,973,488 - DZA65_RS09360 0.49 -0.1 1,973,488 - DZA65_RS09360 0.49 -2.1 1,973,500 + DZA65_RS09360 0.52 +0.3 1,973,501 - DZA65_RS09360 0.52 +0.5 1,973,501 - DZA65_RS09360 0.52 +0.3 1,973,501 - DZA65_RS09360 0.52 +0.5 1,973,504 + DZA65_RS09360 0.53 +2.9 1,973,504 + DZA65_RS09360 0.53 +0.3 1,973,534 + DZA65_RS09360 0.60 -0.1 1,973,538 + DZA65_RS09360 0.60 -2.6 1,973,538 + DZA65_RS09360 0.60 -0.9 1,973,538 + DZA65_RS09360 0.60 -0.7 1,973,538 + DZA65_RS09360 0.60 +3.5 1,973,539 - DZA65_RS09360 0.61 +0.1 1,973,573 - DZA65_RS09360 0.68 +0.1 1,973,574 + DZA65_RS09360 0.68 +0.3 1,973,714 + -1.7 1,973,715 - +0.7 1,973,715 - +0.3 1,973,738 - +0.3 1,973,756 + -2.0 1,973,756 + -0.1 1,973,758 + +0.2 1,973,758 + -0.5 1,973,758 + -0.9 1,973,759 - +0.7 1,973,759 - -1.0 1,973,759 - -1.1 1,973,759 - -0.8 1,973,759 - +0.0 1,973,759 - -0.4 1,973,759 - -1.1 1,973,781 - +0.1 1,973,784 + +0.3 1,973,784 + -1.8 1,973,875 + DZA65_RS09365 0.35 -0.9 1,973,875 + DZA65_RS09365 0.35 -1.7 1,973,952 - DZA65_RS09365 0.61 +0.7 1,973,975 - DZA65_RS09365 0.69 -2.0 1,973,975 - DZA65_RS09365 0.69 +0.6 1,973,977 + DZA65_RS09365 0.69 +0.0 1,973,978 - DZA65_RS09365 0.70 +1.3 1,974,001 + DZA65_RS09365 0.77 +0.2 1,974,001 + DZA65_RS09365 0.77 +1.7 1,974,007 - DZA65_RS09365 0.79 -0.1 1,974,026 + DZA65_RS09365 0.86 -0.9 1,974,027 - DZA65_RS09365 0.86 -0.2 1,974,027 - DZA65_RS09365 0.86 +1.3 1,974,035 + DZA65_RS09365 0.89 -1.3 1,974,035 + DZA65_RS09365 0.89 +0.4 1,974,036 - DZA65_RS09365 0.89 -0.4 1,974,036 - DZA65_RS09365 0.89 -0.7 1,974,036 - DZA65_RS09365 0.89 +0.3 1,974,041 - -1.1 1,974,079 + +0.7 1,974,104 - -0.3 1,974,137 - DZA65_RS09370 0.23 +0.9 1,974,168 + DZA65_RS09370 0.41 +0.7 1,974,194 + DZA65_RS09370 0.55 +1.7 1,974,194 + DZA65_RS09370 0.55 -0.8 1,974,194 + DZA65_RS09370 0.55 -1.1 1,974,194 + DZA65_RS09370 0.55 -0.7 1,974,194 + DZA65_RS09370 0.55 -2.0 1,974,195 - DZA65_RS09370 0.56 +0.0 1,974,195 - DZA65_RS09370 0.56 -1.3 1,974,195 - DZA65_RS09370 0.56 -1.5 1,974,288 + DZA65_RS09375 0.19 -0.4 1,974,289 - DZA65_RS09375 0.20 -0.5 1,974,289 - DZA65_RS09375 0.20 -1.5 1,974,335 - +0.8 1,974,335 - -1.3 1,974,466 + DZA65_RS09380 0.54 -0.7 1,974,466 + DZA65_RS09380 0.54 +0.2 1,974,467 - DZA65_RS09380 0.54 -0.8 1,974,467 - DZA65_RS09380 0.54 +0.1 1,974,531 + DZA65_RS09380 0.80 +0.8 1,974,532 - DZA65_RS09380 0.81 +0.1 1,974,532 - DZA65_RS09380 0.81 -1.1 1,974,532 - DZA65_RS09380 0.81 +1.2 1,974,532 - DZA65_RS09380 0.81 -0.4 1,974,532 - DZA65_RS09380 0.81 -0.0 1,974,569 + +0.0 1,974,570 - +0.6 1,974,570 - -0.1 1,974,583 + -0.2 1,974,583 + +1.2 1,974,584 - +0.2 1,974,645 + -0.7 1,974,646 - +0.5 1,974,646 - +0.6 1,974,646 - -1.1 1,974,646 - +0.6 1,974,666 + -0.5 1,974,666 + -1.3 1,974,666 + -0.3 1,974,666 + -0.4 1,974,667 - -1.3 1,974,667 - +1.7 1,974,723 + +1.1 1,974,761 + -1.0 1,974,761 + +1.3 1,974,762 - +1.1 1,974,765 + -0.3 1,974,765 + -2.3 1,974,765 + -0.9 1,974,765 + +1.3 1,974,765 + +0.7 1,974,765 + +0.3 1,974,766 - +0.0 1,974,779 + -0.4 1,974,779 + +1.6 1,974,794 - -1.7 1,974,814 - +1.8 1,974,845 - -1.3 1,974,891 + -0.5 1,974,892 - -2.0 1,974,892 - +0.7 1,974,909 + +0.2 1,974,910 - +0.3 1,974,943 + -1.8 1,974,957 + -1.0 1,974,972 + -0.3 1,974,972 + +0.1 1,974,973 - +0.0 1,975,014 - -1.0 1,975,045 + -0.3 1,975,046 - -0.7 1,975,077 + -0.1 1,975,077 + +2.1 1,975,078 - -0.7 1,975,078 - +0.7 1,975,078 - -0.6 1,975,121 - DZA65_RS09385 0.10 -0.2 1,975,163 + DZA65_RS09385 0.13 -0.8 1,975,164 - DZA65_RS09385 0.13 +1.7 1,975,226 - DZA65_RS09385 0.16 +0.1 1,975,253 + DZA65_RS09385 0.18 -0.5 1,975,253 + DZA65_RS09385 0.18 +0.2 1,975,254 - DZA65_RS09385 0.18 -0.4 1,975,273 + -0.3 1,975,274 - DZA65_RS09385 0.19 -0.2 1,975,274 - DZA65_RS09385 0.19 +0.8
Or see this region's nucleotide sequence