Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07455

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,548,298	+				-1.0
1,548,298	+				+0.9
1,548,299	-				+2.0
1,548,303	+				-0.1
1,548,309	+				-1.2
1,548,309	+				-0.0
1,548,309	+				-0.3
1,548,309	+				+0.1
1,548,310	-				-0.3
1,548,310	-				+0.5
1,548,310	-				-0.2
1,548,310	-				+0.6
1,548,310	-				-1.0
1,548,310	-				+0.3
1,548,310	-				+0.5
1,548,310	-				+0.5
1,548,310	-				+1.9
1,548,311	+				+1.1
1,548,311	+				+2.3
1,548,311	+				+0.4
1,548,311	+				+1.2
1,548,311	+				+1.7
1,548,312	-				-1.5
1,548,312	-				+1.1
1,548,312	-				+0.9
1,548,312	-				-0.6
1,548,312	-				+1.0
1,548,313	+				+1.6
1,548,313	+				-0.5
1,548,313	+				+0.5
1,548,314	-				+0.1
1,548,314	-				-2.3
1,548,341	+				-1.1
1,548,341	+				-0.1
1,548,341	+				+1.8
1,548,341	+				-0.1
1,548,341	+				-0.1
1,548,341	+				-1.5
1,548,342	-				-0.3
1,548,342	-				-0.0
1,548,352	+				-0.2
1,548,353	-				-0.2
1,548,366	-				+0.5
1,548,368	+				-1.3
1,548,369	-				-1.1
1,548,470	+		DZA65_RS07450	0.34	-0.5
1,548,481	-		DZA65_RS07450	0.36	+1.8
1,548,524	+		DZA65_RS07450	0.47	+0.0
1,548,609	-		DZA65_RS07450	0.68	+1.2
1,548,615	+		DZA65_RS07450	0.69	-0.5
1,548,615	+		DZA65_RS07450	0.69	-1.0
1,548,635	+		DZA65_RS07450	0.74	+2.0
1,548,635	+		DZA65_RS07450	0.74	+0.8
1,548,635	+		DZA65_RS07450	0.74	+1.7
1,548,636	-		DZA65_RS07450	0.75	-1.2
1,548,681	-		DZA65_RS07450	0.86	+1.7
1,548,681	-		DZA65_RS07450	0.86	+0.2
1,548,681	-		DZA65_RS07450	0.86	+0.5
1,548,708	-				-0.4
1,548,708	-				+0.0
1,548,711	+				-1.0
1,548,711	+				-0.5
1,548,712	-				-0.1
1,548,712	-				+0.4
1,548,728	-				+0.5
1,548,788	+				-2.1
1,548,842	-				+1.2
1,548,855	+				-0.5
1,548,856	-				-0.7
1,548,967	-				+0.5
1,548,967	-				-0.5
1,548,970	+				+1.9
1,548,970	+				+0.3
1,548,970	+				+0.6
1,549,021	+				-0.5
1,549,021	+				-0.2
1,549,021	+				-1.7
1,549,021	+				+0.3
1,549,022	-				+0.2
1,549,022	-				-2.9
1,549,022	-				-1.0
1,549,025	+				-0.7
1,549,026	-				+1.7
1,549,036	+				+1.6
1,549,061	+				-3.0
1,549,062	-				+0.2
1,549,077	-				+0.8
1,549,077	-				+2.6
1,549,104	-				-2.3
1,549,190	+				-0.8
1,549,206	+				-0.8
1,549,267	-				-0.4
1,549,294	+				-1.1
1,549,294	+				+1.5
1,549,294	+				-0.6
1,549,294	+				-0.3
1,549,294	+				-1.0
1,549,294	+				+0.9
1,549,294	+				+0.5
1,549,294	+				-1.9
1,549,295	-				-2.4
1,549,295	-				+0.1
1,549,295	-				+0.2
1,549,295	-				+0.7
1,549,315	+				-0.5
1,549,316	-				+0.9
1,549,395	-		DZA65_RS07455	0.17	+0.3
1,549,395	-		DZA65_RS07455	0.17	-0.9
1,549,405	+		DZA65_RS07455	0.18	-0.3
1,549,405	+		DZA65_RS07455	0.18	+1.1
1,549,406	-		DZA65_RS07455	0.18	+1.4
1,549,406	-		DZA65_RS07455	0.18	-0.1
1,549,406	-		DZA65_RS07455	0.18	-0.8
1,549,406	-		DZA65_RS07455	0.18	-1.3
1,549,406	-		DZA65_RS07455	0.18	-1.4
1,549,406	-		DZA65_RS07455	0.18	-0.4
1,549,406	-		DZA65_RS07455	0.18	+0.7
1,549,406	-		DZA65_RS07455	0.18	-1.1
1,549,530	+		DZA65_RS07455	0.31	+0.9
1,549,530	+		DZA65_RS07455	0.31	-0.2
1,549,530	+		DZA65_RS07455	0.31	-0.4
1,549,530	+		DZA65_RS07455	0.31	-0.4
1,549,530	+		DZA65_RS07455	0.31	-1.0
1,549,530	+		DZA65_RS07455	0.31	+1.5
1,549,530	+		DZA65_RS07455	0.31	+0.5
1,549,530	+		DZA65_RS07455	0.31	-0.2
1,549,531	-		DZA65_RS07455	0.31	-0.8
1,549,531	-		DZA65_RS07455	0.31	-0.1
1,549,531	-		DZA65_RS07455	0.31	-0.8
1,549,531	-		DZA65_RS07455	0.31	-3.5
1,549,531	-		DZA65_RS07455	0.31	+0.0
1,549,531	-		DZA65_RS07455	0.31	-0.5
1,549,531	-		DZA65_RS07455	0.31	-0.5
1,549,531	-		DZA65_RS07455	0.31	-2.5
1,549,533	-		DZA65_RS07455	0.31	-1.5
1,549,533	-		DZA65_RS07455	0.31	-0.7
1,549,533	-		DZA65_RS07455	0.31	+1.1
1,549,594	-		DZA65_RS07455	0.37	+0.7
1,549,594	-		DZA65_RS07455	0.37	-1.2
1,549,594	-		DZA65_RS07455	0.37	-1.2
1,549,628	+		DZA65_RS07455	0.41	-0.2
1,549,667	-		DZA65_RS07455	0.45	+0.8
1,549,791	+		DZA65_RS07455	0.57	-1.7
1,549,845	+		DZA65_RS07455	0.62	+0.2
1,549,845	+		DZA65_RS07455	0.62	-2.5
1,549,846	-		DZA65_RS07455	0.63	-0.1
1,549,941	-		DZA65_RS07455	0.72	-1.4
1,549,941	-		DZA65_RS07455	0.72	-1.1
1,549,941	-		DZA65_RS07455	0.72	+0.3
1,549,947	+		DZA65_RS07455	0.73	-0.5
1,549,947	+		DZA65_RS07455	0.73	-1.3
1,549,947	+		DZA65_RS07455	0.73	-0.5
1,549,982	-		DZA65_RS07455	0.76	+0.3
1,549,994	+		DZA65_RS07455	0.77	-1.2
1,549,994	+		DZA65_RS07455	0.77	+0.5
1,549,994	+		DZA65_RS07455	0.77	-0.4
1,549,994	+		DZA65_RS07455	0.77	-1.4
1,549,994	+		DZA65_RS07455	0.77	+0.2
1,549,994	+		DZA65_RS07455	0.77	+0.2
1,549,995	-		DZA65_RS07455	0.77	+1.2
1,549,995	-		DZA65_RS07455	0.77	+0.2
1,549,995	-		DZA65_RS07455	0.77	-0.1
1,549,995	-		DZA65_RS07455	0.77	-2.1
1,549,995	-		DZA65_RS07455	0.77	+0.3
1,550,126	+				-0.3
1,550,169	+				-2.0
1,550,262	+				-1.7
1,550,263	-				+1.5
1,550,263	-				-0.5
1,550,268	-				+0.1
1,550,349	+				-0.5
1,550,361	+				+1.9
1,550,371	+				-0.8
1,550,372	-				+1.2
1,550,372	-				-0.3
1,550,379	+				-0.3
1,550,379	+				-0.0
1,550,379	+				-1.6
1,550,380	-				-2.5
1,550,380	-				-0.5
1,550,380	-				+1.5
1,550,380	-				+0.4
1,550,380	-				-0.1
1,550,409	+				-0.2
1,550,410	-				+0.6
1,550,443	+				-1.1
1,550,443	+				-0.3
1,550,443	+				-0.4
1,550,443	+				-2.4
1,550,443	+				-0.7
1,550,444	-				+0.3
1,550,444	-				-1.7
1,550,444	-				+0.5
1,550,444	-				+1.0
1,550,445	+				-0.5
1,550,446	-				+0.6
1,550,446	-				+2.3
1,550,446	-				-0.3
1,550,451	+				+1.2
1,550,451	+				-1.5
1,550,452	-				-0.5
1,550,453	+				+0.8
1,550,453	+				-0.6
1,550,453	+				+0.5
1,550,453	+				+0.1
1,550,453	+				+1.1
1,550,453	+				+0.8
1,550,454	-				-1.1
1,550,454	-				+1.5
1,550,498	+				+0.8
1,550,498	+				-0.5
1,550,498	+				-0.1
1,550,499	-				-0.8
1,550,499	-				-0.9
1,550,515	+				-1.0
1,550,527	+				-2.7
1,550,528	-				+0.0
1,550,539	+		DZA65_RS07460	0.11	+1.3
1,550,638	-		DZA65_RS07460	0.24	-1.0
1,550,638	-		DZA65_RS07460	0.24	+0.5
1,550,667	+		DZA65_RS07460	0.28	+0.1
1,550,680	+		DZA65_RS07460	0.30	-0.4
1,550,744	+		DZA65_RS07460	0.38	-1.1
1,550,788	+		DZA65_RS07460	0.44	-0.7
1,550,881	+		DZA65_RS07460	0.56	-1.7
1,550,881	+		DZA65_RS07460	0.56	-1.1
1,550,881	+		DZA65_RS07460	0.56	-0.1
1,550,881	+		DZA65_RS07460	0.56	-1.5
1,550,881	+		DZA65_RS07460	0.56	-1.7
1,550,905	+		DZA65_RS07460	0.60	+0.9
1,550,905	+		DZA65_RS07460	0.60	+0.3
1,550,905	+		DZA65_RS07460	0.60	-0.3
1,550,905	+		DZA65_RS07460	0.60	-2.1
1,550,906	-		DZA65_RS07460	0.60	+0.3
1,550,991	+		DZA65_RS07460	0.71	-0.9
1,550,995	+		DZA65_RS07460	0.72	+0.0
1,551,004	+		DZA65_RS07460	0.73	-0.3
1,551,025	-		DZA65_RS07460	0.76	+0.0
1,551,208	-				-0.1