Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06900

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS06890 and DZA65_RS06895 overlap by 4 nucleotidesDZA65_RS06895 and DZA65_RS06900 are separated by 12 nucleotidesDZA65_RS06900 and DZA65_RS06905 are separated by 94 nucleotides DZA65_RS06890: DZA65_RS06890 - tol-pal system-associated acyl-CoA thioesterase, at 1,431,257 to 1,431,661 _RS06890 DZA65_RS06895: DZA65_RS06895 - Tol-Pal system protein TolQ, at 1,431,658 to 1,432,344 _RS06895 DZA65_RS06900: DZA65_RS06900 - colicin uptake protein TolR, at 1,432,357 to 1,432,782 _RS06900 DZA65_RS06905: DZA65_RS06905 - cell envelope integrity protein TolA, at 1,432,877 to 1,434,061 _RS06905 Position (kb) 1432 1433Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1431.383 kb on + strand, within DZA65_RS06890at 1431.383 kb on + strand, within DZA65_RS06890at 1431.383 kb on + strand, within DZA65_RS06890at 1431.383 kb on + strand, within DZA65_RS06890at 1431.383 kb on + strand, within DZA65_RS06890at 1431.384 kb on - strand, within DZA65_RS06890at 1431.436 kb on + strand, within DZA65_RS06890at 1431.452 kb on + strand, within DZA65_RS06890at 1431.480 kb on + strand, within DZA65_RS06890at 1431.507 kb on + strand, within DZA65_RS06890at 1431.507 kb on + strand, within DZA65_RS06890at 1431.507 kb on + strand, within DZA65_RS06890at 1431.567 kb on + strand, within DZA65_RS06890at 1431.567 kb on + strand, within DZA65_RS06890at 1431.567 kb on + strand, within DZA65_RS06890at 1431.567 kb on + strand, within DZA65_RS06890at 1431.585 kb on + strand, within DZA65_RS06890at 1431.631 kb on + strandat 1431.631 kb on + strandat 1431.631 kb on + strandat 1431.637 kb on + strandat 1431.637 kb on + strandat 1431.637 kb on + strandat 1431.637 kb on + strandat 1431.637 kb on + strandat 1431.672 kb on + strandat 1432.072 kb on + strand, within DZA65_RS06895at 1432.072 kb on + strand, within DZA65_RS06895at 1432.072 kb on + strand, within DZA65_RS06895at 1432.073 kb on - strand, within DZA65_RS06895at 1432.094 kb on + strand, within DZA65_RS06895at 1432.094 kb on + strand, within DZA65_RS06895at 1432.104 kb on + strand, within DZA65_RS06895at 1432.104 kb on + strand, within DZA65_RS06895at 1432.104 kb on + strand, within DZA65_RS06895at 1432.104 kb on + strand, within DZA65_RS06895at 1432.104 kb on + strand, within DZA65_RS06895at 1432.104 kb on + strand, within DZA65_RS06895at 1432.104 kb on + strand, within DZA65_RS06895at 1432.104 kb on + strand, within DZA65_RS06895at 1432.231 kb on + strand, within DZA65_RS06895at 1432.233 kb on + strand, within DZA65_RS06895at 1432.401 kb on + strand, within DZA65_RS06900at 1432.401 kb on + strand, within DZA65_RS06900at 1432.404 kb on + strand, within DZA65_RS06900at 1432.573 kb on + strand, within DZA65_RS06900at 1432.838 kb on + strandat 1432.839 kb on - strandat 1432.908 kb on + strandat 1432.909 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,431,383 + DZA65_RS06890 0.31 -0.9
1,431,383 + DZA65_RS06890 0.31 +0.9
1,431,383 + DZA65_RS06890 0.31 +1.1
1,431,383 + DZA65_RS06890 0.31 -0.4
1,431,383 + DZA65_RS06890 0.31 -0.4
1,431,384 - DZA65_RS06890 0.31 +0.3
1,431,436 + DZA65_RS06890 0.44 +0.1
1,431,452 + DZA65_RS06890 0.48 -2.0
1,431,480 + DZA65_RS06890 0.55 -0.4
1,431,507 + DZA65_RS06890 0.62 +1.5
1,431,507 + DZA65_RS06890 0.62 -1.5
1,431,507 + DZA65_RS06890 0.62 -0.8
1,431,567 + DZA65_RS06890 0.77 -0.5
1,431,567 + DZA65_RS06890 0.77 +0.1
1,431,567 + DZA65_RS06890 0.77 -1.0
1,431,567 + DZA65_RS06890 0.77 +0.7
1,431,585 + DZA65_RS06890 0.81 +0.1
1,431,631 + -0.3
1,431,631 + +0.1
1,431,631 + +2.1
1,431,637 + -1.4
1,431,637 + -1.0
1,431,637 + +1.1
1,431,637 + -1.1
1,431,637 + -0.4
1,431,672 + -2.3
1,432,072 + DZA65_RS06895 0.60 -2.5
1,432,072 + DZA65_RS06895 0.60 -2.8
1,432,072 + DZA65_RS06895 0.60 -1.5
1,432,073 - DZA65_RS06895 0.60 -1.8
1,432,094 + DZA65_RS06895 0.63 -4.2
1,432,094 + DZA65_RS06895 0.63 -2.4
1,432,104 + DZA65_RS06895 0.65 -0.8
1,432,104 + DZA65_RS06895 0.65 -2.5
1,432,104 + DZA65_RS06895 0.65 -1.1
1,432,104 + DZA65_RS06895 0.65 -2.7
1,432,104 + DZA65_RS06895 0.65 -3.1
1,432,104 + DZA65_RS06895 0.65 -1.1
1,432,104 + DZA65_RS06895 0.65 +0.2
1,432,104 + DZA65_RS06895 0.65 -2.5
1,432,231 + DZA65_RS06895 0.83 -3.0
1,432,233 + DZA65_RS06895 0.84 -3.7
1,432,401 + DZA65_RS06900 0.10 +0.4
1,432,401 + DZA65_RS06900 0.10 -2.7
1,432,404 + DZA65_RS06900 0.11 -1.5
1,432,573 + DZA65_RS06900 0.51 -4.3
1,432,838 + +0.7
1,432,839 - -1.3
1,432,908 + -1.4
1,432,909 - -1.8

Or see this region's nucleotide sequence