Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS06250 and DZA65_RS06255 are separated by 176 nucleotides DZA65_RS06255 and DZA65_RS06260 are separated by 536 nucleotides
DZA65_RS06250: DZA65_RS06250 - ribonucleotide-diphosphate reductase subunit beta, at 1,294,337 to 1,295,467
_RS06250
DZA65_RS06255: DZA65_RS06255 - ribonucleoside-diphosphate reductase subunit alpha, at 1,295,644 to 1,297,932
_RS06255
DZA65_RS06260: DZA65_RS06260 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 1,298,469 to 1,299,188
_RS06260
Position (kb)
1295
1296
1297
1298 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1295.601 kb on - strand at 1295.646 kb on - strand at 1295.646 kb on - strand at 1295.646 kb on - strand at 1295.646 kb on - strand at 1295.646 kb on - strand at 1295.646 kb on - strand at 1295.646 kb on - strand at 1298.048 kb on - strand at 1298.050 kb on - strand at 1298.050 kb on - strand at 1298.139 kb on - strand at 1298.145 kb on + strand at 1298.145 kb on + strand at 1298.146 kb on - strand at 1298.163 kb on + strand at 1298.262 kb on - strand at 1298.262 kb on - strand at 1298.337 kb on + strand at 1298.337 kb on + strand at 1298.338 kb on - strand at 1298.350 kb on - strand at 1298.364 kb on - strand at 1298.364 kb on - strand at 1298.394 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,295,601 - -2.0 1,295,646 - -1.4 1,295,646 - -0.0 1,295,646 - +1.0 1,295,646 - +0.3 1,295,646 - +0.6 1,295,646 - -1.3 1,295,646 - +0.6 1,298,048 - -0.4 1,298,050 - +0.5 1,298,050 - -0.6 1,298,139 - +1.3 1,298,145 + -1.3 1,298,145 + -2.6 1,298,146 - +0.0 1,298,163 + +0.0 1,298,262 - -2.3 1,298,262 - +0.9 1,298,337 + -0.8 1,298,337 + +3.1 1,298,338 - -0.0 1,298,350 - -1.1 1,298,364 - +0.3 1,298,364 - -1.3 1,298,394 + -0.4
Or see this region's nucleotide sequence