Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06190

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,280,290	+		DZA65_RS06185	0.90	-0.7
1,280,299	-				-2.1
1,280,370	+				-0.9
1,280,370	+				+0.4
1,280,370	+				-1.8
1,280,370	+				-3.3
1,280,371	-				-1.1
1,280,371	-				-2.8
1,280,414	-				-0.7
1,280,451	+				+0.9
1,280,451	+				-0.1
1,280,452	-				+1.6
1,280,452	-				-0.0
1,280,452	-				-1.8
1,280,555	+				+1.0
1,280,555	+				-0.4
1,280,555	+				-2.0
1,280,555	+				-1.4
1,280,555	+				-0.2
1,280,555	+				-0.3
1,280,556	-				+0.3
1,280,556	-				-1.6
1,280,556	-				-1.3
1,280,556	-				+0.2
1,280,556	-				-0.8
1,280,556	-				-0.9
1,280,556	-				-0.6
1,280,556	-				+1.5
1,280,556	-				+0.2
1,280,559	+				+0.1
1,280,559	+				+0.4
1,280,560	-				+0.0
1,280,560	-				-0.3
1,280,590	+				-0.2
1,280,590	+				-1.3
1,280,591	-				+0.6
1,280,592	+				+0.1
1,280,658	+				-0.1
1,280,658	+				-1.8
1,280,659	-				-1.0
1,280,676	+				+2.1
1,280,729	+				-3.3
1,280,729	+				+0.6
1,280,729	+				-0.4
1,280,730	-				-0.8
1,280,731	+				+0.0
1,280,731	+				-1.0
1,280,733	+				+1.4
1,280,787	+				+0.6
1,280,787	+				-0.8
1,280,787	+				-0.0
1,280,788	-				+0.2
1,280,815	+				+0.1
1,280,816	-				-1.3
1,280,816	-				+0.6
1,280,826	+				-0.4
1,280,826	+				-2.2
1,280,826	+				+0.4
1,280,826	+				-2.2
1,280,827	-				-0.0
1,280,829	+				-0.4
1,280,871	+				-1.2
1,280,872	-				-2.6
1,280,872	-				-1.9
1,280,872	-				-1.8
1,280,901	+				+1.0
1,280,926	+				+0.4
1,280,927	-				-0.3
1,280,940	+				+0.6
1,280,941	-				+2.9
1,281,002	-				-0.1
1,281,033	+				-0.2
1,281,033	+				-1.8
1,281,034	-				-0.1
1,281,063	+				-0.2
1,281,064	-				+2.0
1,281,064	-				-0.8
1,281,083	+				+1.1
1,281,083	+				-2.2
1,281,084	-				-0.7
1,281,222	-		DZA65_RS06190	0.15	-1.0
1,281,295	-		DZA65_RS06190	0.20	-1.0
1,281,295	-		DZA65_RS06190	0.20	+0.4
1,281,295	-		DZA65_RS06190	0.20	-1.7
1,281,344	-		DZA65_RS06190	0.23	+0.6
1,281,517	-		DZA65_RS06190	0.33	-0.1
1,281,517	-		DZA65_RS06190	0.33	-0.7
1,281,631	-		DZA65_RS06190	0.40	-1.0
1,281,683	+		DZA65_RS06190	0.43	+0.4
1,281,774	+		DZA65_RS06190	0.49	+1.1
1,281,774	+		DZA65_RS06190	0.49	+0.0
1,281,775	-		DZA65_RS06190	0.49	+1.6
1,281,775	-		DZA65_RS06190	0.49	-1.0
1,281,775	-		DZA65_RS06190	0.49	-0.1
1,281,775	-		DZA65_RS06190	0.49	-0.8
1,281,775	-		DZA65_RS06190	0.49	+1.4
1,281,826	+		DZA65_RS06190	0.52	-0.3
1,281,827	-		DZA65_RS06190	0.52	-1.8
1,281,827	-		DZA65_RS06190	0.52	-0.1
1,281,827	-		DZA65_RS06190	0.52	-1.1
1,281,827	-		DZA65_RS06190	0.52	-0.9
1,281,827	-		DZA65_RS06190	0.52	+1.1
1,281,849	+		DZA65_RS06190	0.53	+1.4
1,281,849	+		DZA65_RS06190	0.53	+0.1
1,281,850	-		DZA65_RS06190	0.53	-0.3
1,281,850	-		DZA65_RS06190	0.53	-1.2
1,281,850	-		DZA65_RS06190	0.53	+0.6
1,281,850	-		DZA65_RS06190	0.53	-0.5
1,281,870	-		DZA65_RS06190	0.54	+0.9
1,281,903	+		DZA65_RS06190	0.56	-1.0
1,281,904	-		DZA65_RS06190	0.57	+0.1
1,281,969	+		DZA65_RS06190	0.60	+0.7
1,281,969	+		DZA65_RS06190	0.60	+0.8
1,281,969	+		DZA65_RS06190	0.60	-0.9
1,281,969	+		DZA65_RS06190	0.60	+0.9
1,281,969	+		DZA65_RS06190	0.60	-0.3
1,281,969	+		DZA65_RS06190	0.60	-0.1
1,281,969	+		DZA65_RS06190	0.60	-1.2
1,281,970	-		DZA65_RS06190	0.60	+1.0
1,281,970	-		DZA65_RS06190	0.60	-2.9
1,281,970	-		DZA65_RS06190	0.60	-1.0
1,281,970	-		DZA65_RS06190	0.60	-0.3
1,281,970	-		DZA65_RS06190	0.60	-0.5
1,281,970	-		DZA65_RS06190	0.60	-1.4
1,281,970	-		DZA65_RS06190	0.60	+0.4
1,281,972	+		DZA65_RS06190	0.61	-0.8
1,281,972	+		DZA65_RS06190	0.61	-0.4
1,281,972	+		DZA65_RS06190	0.61	+0.3
1,281,973	-		DZA65_RS06190	0.61	-0.9
1,281,973	-		DZA65_RS06190	0.61	+1.1
1,281,973	-		DZA65_RS06190	0.61	-1.2
1,281,973	-		DZA65_RS06190	0.61	+1.0
1,281,973	-		DZA65_RS06190	0.61	-0.0
1,281,973	-		DZA65_RS06190	0.61	+0.2
1,281,973	-		DZA65_RS06190	0.61	-0.0
1,282,227	+		DZA65_RS06190	0.76	-0.2
1,282,227	+		DZA65_RS06190	0.76	+0.2
1,282,227	+		DZA65_RS06190	0.76	-0.1
1,282,228	-		DZA65_RS06190	0.76	-0.0
1,282,228	-		DZA65_RS06190	0.76	-0.3
1,282,228	-		DZA65_RS06190	0.76	+0.3
1,282,228	-		DZA65_RS06190	0.76	-1.4
1,282,228	-				-0.4
1,282,228	-		DZA65_RS06190	0.76	-0.0
1,282,272	+		DZA65_RS06190	0.79	-1.6
1,282,272	+		DZA65_RS06190	0.79	-0.4
1,282,272	+		DZA65_RS06190	0.79	+1.6
1,282,273	-		DZA65_RS06190	0.79	-0.4
1,282,273	-		DZA65_RS06190	0.79	+0.1
1,282,273	-		DZA65_RS06190	0.79	-0.4
1,282,273	-		DZA65_RS06190	0.79	-0.5
1,282,273	-		DZA65_RS06190	0.79	-2.4
1,282,273	-		DZA65_RS06190	0.79	+1.1
1,282,305	+		DZA65_RS06190	0.81	-0.9
1,282,305	+		DZA65_RS06190	0.81	-0.4
1,282,305	+		DZA65_RS06190	0.81	-0.4
1,282,306	-		DZA65_RS06190	0.81	+0.6
1,282,306	-		DZA65_RS06190	0.81	-1.6
1,282,306	-		DZA65_RS06190	0.81	-1.4
1,282,306	-		DZA65_RS06190	0.81	-0.4
1,282,306	-		DZA65_RS06190	0.81	-2.1
1,282,306	-		DZA65_RS06190	0.81	+0.1
1,282,306	-		DZA65_RS06190	0.81	+0.6
1,282,325	+		DZA65_RS06190	0.82	+0.9
1,282,440	+		DZA65_RS06190	0.89	-2.0
1,282,440	+		DZA65_RS06190	0.89	+1.6
1,282,441	-		DZA65_RS06190	0.89	+0.6
1,282,441	-		DZA65_RS06190	0.89	-1.2
1,282,445	+		DZA65_RS06190	0.89	-0.2
1,282,446	-		DZA65_RS06190	0.89	-0.2
1,282,446	-		DZA65_RS06190	0.89	-0.4
1,282,451	+		DZA65_RS06190	0.90	+1.1
1,282,512	+				-0.6
1,282,512	+				+1.1
1,282,512	+				-0.4
1,282,513	-				+0.8
1,282,513	-				+0.0
1,282,513	-				+1.6
1,282,554	+				-0.6
1,282,591	-				+0.1
1,282,615	-				+1.3
1,282,620	+				-0.5
1,282,621	-				-1.0
1,282,631	+				-1.4
1,282,631	+				-0.2
1,282,671	-				-0.3
1,282,700	+				+1.1
1,282,700	+				+0.6
1,282,700	+				+0.9
1,282,700	+				+1.8
1,282,701	-				-0.4
1,282,708	+				+0.4
1,282,709	-				-0.2
1,282,709	-				-0.8
1,282,709	-				+1.6
1,282,720	-				-1.1
1,282,720	-				+0.1
1,282,822	+				-0.8
1,282,831	+				-2.0
1,282,833	+				+0.3
1,282,833	+				-2.0
1,282,833	+				+1.0
1,282,833	+				+0.1
1,282,853	-				+0.6
1,282,916	-				+1.0
1,282,919	-				+2.0
1,282,919	-				+0.4
1,282,956	+				+0.6
1,282,957	-				+0.4
1,282,957	-				-1.5
1,283,034	+				+0.3
1,283,169	-				-0.5
1,283,208	-				+0.4
1,283,263	+				+1.2
1,283,263	+				-1.8
1,283,264	-				-1.0
1,283,267	+				+0.1
1,283,267	+				+0.6
1,283,267	+				+1.1
1,283,267	+				+1.1
1,283,267	+				-0.1
1,283,267	+				+1.1
1,283,268	-				-1.2
1,283,309	+		DZA65_RS06195	0.17	-0.0
1,283,309	+		DZA65_RS06195	0.17	-0.0
1,283,310	-		DZA65_RS06195	0.17	-1.0
1,283,310	-		DZA65_RS06195	0.17	+0.3
1,283,403	+		DZA65_RS06195	0.41	+0.0
1,283,403	+		DZA65_RS06195	0.41	-0.1
1,283,404	-		DZA65_RS06195	0.41	-0.6
1,283,426	+		DZA65_RS06195	0.46	-0.1
1,283,427	-		DZA65_RS06195	0.47	+1.6
1,283,453	+		DZA65_RS06195	0.53	+0.6
1,283,454	-		DZA65_RS06195	0.53	+0.1
1,283,457	-		DZA65_RS06195	0.54	+0.2
1,283,571	+		DZA65_RS06195	0.83	-0.9
1,283,597	+		DZA65_RS06195	0.89	+0.3
1,283,600	+				+0.1
1,283,601	-				-0.4