Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03730 and DZA65_RS03735 overlap by 8 nucleotides DZA65_RS03735 and DZA65_RS03740 are separated by 42 nucleotides DZA65_RS03740 and DZA65_RS03745 are separated by 344 nucleotides
DZA65_RS03730: DZA65_RS03730 - ABC transporter permease, at 788,096 to 789,001
_RS03730
DZA65_RS03735: DZA65_RS03735 - ATP-binding cassette domain-containing protein, at 788,994 to 789,869
_RS03735
DZA65_RS03740: DZA65_RS03740 - ABC transporter ATP-binding protein, at 789,912 to 790,685
_RS03740
DZA65_RS03745: DZA65_RS03745 - AI-2E family transporter, at 791,030 to 792,040
_RS03745
Position (kb) 789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 788.970 kb on + strand at 788.999 kb on + strand at 789.000 kb on - strand at 789.000 kb on - strand at 789.000 kb on - strand at 789.000 kb on - strand at 789.007 kb on + strand at 789.007 kb on + strand at 789.007 kb on + strand at 789.007 kb on + strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.173 kb on + strand, within DZA65_RS03735 at 789.243 kb on - strand, within DZA65_RS03735 at 789.330 kb on + strand, within DZA65_RS03735 at 789.330 kb on + strand, within DZA65_RS03735 at 789.330 kb on + strand at 789.331 kb on - strand, within DZA65_RS03735 at 789.378 kb on + strand, within DZA65_RS03735 at 789.378 kb on + strand, within DZA65_RS03735 at 789.378 kb on + strand, within DZA65_RS03735 at 789.378 kb on + strand, within DZA65_RS03735 at 789.379 kb on - strand, within DZA65_RS03735 at 789.379 kb on - strand, within DZA65_RS03735 at 789.379 kb on - strand, within DZA65_RS03735 at 789.469 kb on + strand, within DZA65_RS03735 at 789.471 kb on + strand, within DZA65_RS03735 at 789.471 kb on + strand, within DZA65_RS03735 at 789.472 kb on - strand, within DZA65_RS03735 at 789.472 kb on - strand, within DZA65_RS03735 at 789.472 kb on - strand, within DZA65_RS03735 at 789.518 kb on + strand, within DZA65_RS03735 at 789.518 kb on + strand, within DZA65_RS03735 at 789.518 kb on + strand, within DZA65_RS03735 at 789.519 kb on - strand, within DZA65_RS03735 at 789.519 kb on - strand, within DZA65_RS03735 at 789.519 kb on - strand, within DZA65_RS03735 at 789.519 kb on - strand, within DZA65_RS03735 at 789.659 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.715 kb on - strand, within DZA65_RS03735 at 789.715 kb on - strand, within DZA65_RS03735 at 789.728 kb on - strand, within DZA65_RS03735 at 789.774 kb on + strand, within DZA65_RS03735 at 789.774 kb on + strand, within DZA65_RS03735 at 789.775 kb on - strand, within DZA65_RS03735 at 789.775 kb on - strand at 789.775 kb on - strand, within DZA65_RS03735 at 789.775 kb on - strand, within DZA65_RS03735 at 789.775 kb on - strand, within DZA65_RS03735 at 789.775 kb on - strand, within DZA65_RS03735 at 789.878 kb on + strand at 789.878 kb on + strand at 789.879 kb on - strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.976 kb on - strand at 789.976 kb on - strand at 789.976 kb on - strand at 789.976 kb on - strand at 789.976 kb on - strand at 789.976 kb on - strand at 790.076 kb on + strand, within DZA65_RS03740 at 790.077 kb on - strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.097 kb on - strand, within DZA65_RS03740 at 790.097 kb on - strand, within DZA65_RS03740 at 790.097 kb on - strand, within DZA65_RS03740 at 790.097 kb on - strand, within DZA65_RS03740 at 790.231 kb on + strand, within DZA65_RS03740 at 790.231 kb on + strand at 790.232 kb on - strand, within DZA65_RS03740 at 790.232 kb on - strand, within DZA65_RS03740 at 790.268 kb on + strand, within DZA65_RS03740 at 790.274 kb on - strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.533 kb on - strand, within DZA65_RS03740 at 790.552 kb on - strand, within DZA65_RS03740 at 790.588 kb on + strand, within DZA65_RS03740 at 790.588 kb on + strand, within DZA65_RS03740 at 790.588 kb on + strand, within DZA65_RS03740 at 790.614 kb on + strand at 790.615 kb on - strand at 790.616 kb on + strand at 790.616 kb on + strand at 790.616 kb on + strand at 790.616 kb on + strand at 790.617 kb on - strand at 790.617 kb on - strand at 790.617 kb on - strand at 790.648 kb on - strand at 790.648 kb on - strand at 790.648 kb on - strand at 790.648 kb on - strand at 790.683 kb on + strand at 790.683 kb on + strand at 790.683 kb on + strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.698 kb on + strand at 790.712 kb on + strand at 790.713 kb on - strand at 790.713 kb on - strand at 790.841 kb on + strand at 790.841 kb on + strand at 790.841 kb on + strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.845 kb on + strand at 790.846 kb on - strand at 790.846 kb on - strand at 790.846 kb on - strand at 790.852 kb on + strand at 790.853 kb on - strand at 790.872 kb on + strand at 790.895 kb on + strand at 790.895 kb on + strand at 790.921 kb on + strand at 790.924 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.007 kb on - strand at 791.007 kb on - strand at 791.007 kb on - strand at 791.007 kb on - strand at 791.029 kb on + strand at 791.029 kb on + strand at 791.029 kb on + strand at 791.029 kb on + strand at 791.029 kb on + strand at 791.030 kb on - strand at 791.030 kb on - strand at 791.030 kb on - strand at 791.077 kb on + strand at 791.078 kb on - strand at 791.078 kb on - strand at 791.078 kb on - strand at 791.081 kb on - strand at 791.081 kb on - strand at 791.081 kb on - strand at 791.147 kb on + strand, within DZA65_RS03745 at 791.147 kb on + strand, within DZA65_RS03745 at 791.147 kb on + strand, within DZA65_RS03745 at 791.147 kb on + strand, within DZA65_RS03745 at 791.147 kb on + strand, within DZA65_RS03745 at 791.148 kb on - strand, within DZA65_RS03745 at 791.158 kb on + strand, within DZA65_RS03745 at 791.163 kb on + strand, within DZA65_RS03745 at 791.163 kb on + strand, within DZA65_RS03745 at 791.163 kb on + strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.336 kb on - strand, within DZA65_RS03745 at 791.362 kb on + strand, within DZA65_RS03745 at 791.362 kb on + strand, within DZA65_RS03745 at 791.362 kb on + strand, within DZA65_RS03745 at 791.362 kb on + strand, within DZA65_RS03745 at 791.363 kb on - strand, within DZA65_RS03745 at 791.363 kb on - strand, within DZA65_RS03745 at 791.370 kb on - strand, within DZA65_RS03745 at 791.370 kb on - strand, within DZA65_RS03745 at 791.370 kb on - strand, within DZA65_RS03745 at 791.381 kb on + strand, within DZA65_RS03745 at 791.382 kb on - strand, within DZA65_RS03745 at 791.382 kb on - strand, within DZA65_RS03745 at 791.397 kb on + strand, within DZA65_RS03745 at 791.397 kb on + strand, within DZA65_RS03745 at 791.398 kb on - strand, within DZA65_RS03745 at 791.398 kb on - strand, within DZA65_RS03745 at 791.504 kb on - strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.533 kb on + strand, within DZA65_RS03745 at 791.533 kb on + strand, within DZA65_RS03745 at 791.534 kb on - strand, within DZA65_RS03745 at 791.534 kb on - strand, within DZA65_RS03745 at 791.649 kb on + strand, within DZA65_RS03745 at 791.649 kb on + strand, within DZA65_RS03745 at 791.650 kb on - strand, within DZA65_RS03745 at 791.650 kb on - strand, within DZA65_RS03745 at 791.658 kb on + strand, within DZA65_RS03745 at 791.659 kb on - strand, within DZA65_RS03745 at 791.674 kb on + strand, within DZA65_RS03745
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 788,970 + -0.4 788,999 + -0.9 789,000 - -0.3 789,000 - +0.6 789,000 - -1.4 789,000 - -0.1 789,007 + +0.5 789,007 + -0.7 789,007 + -1.3 789,007 + +1.6 789,008 - -0.3 789,008 - +1.4 789,008 - -2.1 789,008 - +0.0 789,008 - +0.5 789,008 - +1.2 789,008 - -0.4 789,008 - +1.2 789,008 - +0.3 789,173 + DZA65_RS03735 0.20 -2.6 789,243 - DZA65_RS03735 0.28 -0.1 789,330 + DZA65_RS03735 0.38 -0.7 789,330 + DZA65_RS03735 0.38 -0.1 789,330 + -0.3 789,331 - DZA65_RS03735 0.38 +0.5 789,378 + DZA65_RS03735 0.44 +1.3 789,378 + DZA65_RS03735 0.44 +0.8 789,378 + DZA65_RS03735 0.44 -0.3 789,378 + DZA65_RS03735 0.44 -0.0 789,379 - DZA65_RS03735 0.44 -0.4 789,379 - DZA65_RS03735 0.44 -1.0 789,379 - DZA65_RS03735 0.44 -0.5 789,469 + DZA65_RS03735 0.54 +0.4 789,471 + DZA65_RS03735 0.54 -0.3 789,471 + DZA65_RS03735 0.54 -0.2 789,472 - DZA65_RS03735 0.55 -0.5 789,472 - DZA65_RS03735 0.55 -0.9 789,472 - DZA65_RS03735 0.55 -0.0 789,518 + DZA65_RS03735 0.60 -0.2 789,518 + DZA65_RS03735 0.60 -0.9 789,518 + DZA65_RS03735 0.60 -0.7 789,519 - DZA65_RS03735 0.60 -0.5 789,519 - DZA65_RS03735 0.60 -1.0 789,519 - DZA65_RS03735 0.60 -0.2 789,519 - DZA65_RS03735 0.60 -0.9 789,659 + DZA65_RS03735 0.76 -0.1 789,714 + DZA65_RS03735 0.82 -0.4 789,714 + DZA65_RS03735 0.82 -0.3 789,714 + DZA65_RS03735 0.82 +1.0 789,714 + DZA65_RS03735 0.82 -0.4 789,714 + DZA65_RS03735 0.82 +2.2 789,714 + DZA65_RS03735 0.82 -0.3 789,714 + DZA65_RS03735 0.82 -1.0 789,714 + DZA65_RS03735 0.82 -1.1 789,715 - DZA65_RS03735 0.82 -1.5 789,715 - DZA65_RS03735 0.82 -1.0 789,728 - DZA65_RS03735 0.84 +0.0 789,774 + DZA65_RS03735 0.89 -0.3 789,774 + DZA65_RS03735 0.89 +2.0 789,775 - DZA65_RS03735 0.89 +0.9 789,775 - -1.3 789,775 - DZA65_RS03735 0.89 -0.3 789,775 - DZA65_RS03735 0.89 +0.2 789,775 - DZA65_RS03735 0.89 -0.7 789,775 - DZA65_RS03735 0.89 -0.6 789,878 + +1.6 789,878 + -1.6 789,879 - -0.1 789,975 + +0.4 789,975 + -0.7 789,975 + +1.6 789,975 + -1.0 789,975 + +2.0 789,975 + -0.1 789,975 + -0.7 789,976 - +1.5 789,976 - +0.5 789,976 - -0.4 789,976 - +1.7 789,976 - -0.9 789,976 - -0.8 790,076 + DZA65_RS03740 0.21 +0.1 790,077 - DZA65_RS03740 0.21 -1.1 790,096 + DZA65_RS03740 0.24 +1.4 790,096 + DZA65_RS03740 0.24 +0.7 790,096 + DZA65_RS03740 0.24 +0.8 790,096 + DZA65_RS03740 0.24 +0.3 790,096 + DZA65_RS03740 0.24 -1.0 790,096 + DZA65_RS03740 0.24 +2.1 790,097 - DZA65_RS03740 0.24 -0.1 790,097 - DZA65_RS03740 0.24 -0.3 790,097 - DZA65_RS03740 0.24 +0.0 790,097 - DZA65_RS03740 0.24 -1.0 790,231 + DZA65_RS03740 0.41 +1.3 790,231 + -0.3 790,232 - DZA65_RS03740 0.41 -2.5 790,232 - DZA65_RS03740 0.41 +0.9 790,268 + DZA65_RS03740 0.46 -0.2 790,274 - DZA65_RS03740 0.47 -2.1 790,485 + DZA65_RS03740 0.74 -0.9 790,485 + DZA65_RS03740 0.74 -0.2 790,485 + DZA65_RS03740 0.74 +0.4 790,485 + DZA65_RS03740 0.74 -0.3 790,485 + DZA65_RS03740 0.74 +0.3 790,485 + DZA65_RS03740 0.74 -0.1 790,485 + DZA65_RS03740 0.74 +0.1 790,486 - DZA65_RS03740 0.74 +1.3 790,486 - DZA65_RS03740 0.74 -0.5 790,486 - DZA65_RS03740 0.74 -2.6 790,486 - DZA65_RS03740 0.74 +0.1 790,486 - DZA65_RS03740 0.74 -0.3 790,486 - DZA65_RS03740 0.74 -0.7 790,533 - DZA65_RS03740 0.80 +1.0 790,552 - DZA65_RS03740 0.83 +0.1 790,588 + DZA65_RS03740 0.87 -0.6 790,588 + DZA65_RS03740 0.87 +0.5 790,588 + DZA65_RS03740 0.87 +1.0 790,614 + -0.5 790,615 - -0.5 790,616 + -0.7 790,616 + +0.1 790,616 + +0.0 790,616 + +0.2 790,617 - -1.7 790,617 - +2.0 790,617 - -1.3 790,648 - +0.1 790,648 - -0.1 790,648 - -1.3 790,648 - -0.3 790,683 + -0.4 790,683 + -0.3 790,683 + +0.7 790,684 - -0.5 790,684 - +1.5 790,684 - -0.6 790,684 - -0.3 790,684 - -1.3 790,684 - -1.5 790,698 + -0.4 790,712 + -3.2 790,713 - +2.7 790,713 - -0.7 790,841 + +0.3 790,841 + +2.1 790,841 + -0.6 790,842 - -0.0 790,842 - -0.3 790,842 - +1.1 790,842 - -0.0 790,842 - -1.0 790,842 - +0.7 790,842 - +0.0 790,842 - +0.0 790,842 - -1.3 790,842 - +0.1 790,842 - +1.9 790,845 + +1.1 790,846 - -1.9 790,846 - +0.3 790,846 - +1.5 790,852 + +1.5 790,853 - -0.1 790,872 + +1.1 790,895 + -1.3 790,895 + -0.5 790,921 + +1.7 790,924 + +0.3 791,006 + +1.5 791,006 + -0.9 791,006 + -0.3 791,006 + -1.7 791,006 + -0.9 791,006 + +0.1 791,006 + +1.5 791,006 + +0.7 791,007 - +0.2 791,007 - +0.7 791,007 - +1.3 791,007 - +0.3 791,029 + +0.9 791,029 + -0.4 791,029 + -2.9 791,029 + -1.1 791,029 + +0.7 791,030 - +0.8 791,030 - +0.9 791,030 - -3.1 791,077 + -0.9 791,078 - -0.3 791,078 - +0.2 791,078 - +1.5 791,081 - -0.1 791,081 - -1.9 791,081 - -0.8 791,147 + DZA65_RS03745 0.12 +0.7 791,147 + DZA65_RS03745 0.12 +0.7 791,147 + DZA65_RS03745 0.12 -0.3 791,147 + DZA65_RS03745 0.12 -0.3 791,147 + DZA65_RS03745 0.12 -0.5 791,148 - DZA65_RS03745 0.12 +0.9 791,158 + DZA65_RS03745 0.13 -1.0 791,163 + DZA65_RS03745 0.13 -2.7 791,163 + DZA65_RS03745 0.13 -0.3 791,163 + DZA65_RS03745 0.13 -1.3 791,164 - DZA65_RS03745 0.13 -0.6 791,164 - DZA65_RS03745 0.13 +1.1 791,164 - DZA65_RS03745 0.13 -0.7 791,164 - DZA65_RS03745 0.13 +1.3 791,164 - DZA65_RS03745 0.13 +0.1 791,164 - DZA65_RS03745 0.13 -1.0 791,164 - DZA65_RS03745 0.13 +0.1 791,336 - DZA65_RS03745 0.30 -0.3 791,362 + DZA65_RS03745 0.33 -1.2 791,362 + DZA65_RS03745 0.33 -0.3 791,362 + DZA65_RS03745 0.33 +0.2 791,362 + DZA65_RS03745 0.33 -0.3 791,363 - DZA65_RS03745 0.33 +0.4 791,363 - DZA65_RS03745 0.33 -0.3 791,370 - DZA65_RS03745 0.34 +1.2 791,370 - DZA65_RS03745 0.34 +1.2 791,370 - DZA65_RS03745 0.34 -2.5 791,381 + DZA65_RS03745 0.35 +0.3 791,382 - DZA65_RS03745 0.35 +0.6 791,382 - DZA65_RS03745 0.35 +0.6 791,397 + DZA65_RS03745 0.36 +0.1 791,397 + DZA65_RS03745 0.36 -0.5 791,398 - DZA65_RS03745 0.36 +0.9 791,398 - DZA65_RS03745 0.36 +1.0 791,504 - DZA65_RS03745 0.47 -1.9 791,531 + DZA65_RS03745 0.50 +1.9 791,531 + DZA65_RS03745 0.50 +1.4 791,531 + DZA65_RS03745 0.50 +0.2 791,531 + DZA65_RS03745 0.50 +0.1 791,531 + DZA65_RS03745 0.50 -0.3 791,531 + DZA65_RS03745 0.50 -2.9 791,531 + DZA65_RS03745 0.50 +0.7 791,531 + DZA65_RS03745 0.50 +0.1 791,531 + DZA65_RS03745 0.50 -0.1 791,532 - DZA65_RS03745 0.50 -0.6 791,532 - DZA65_RS03745 0.50 +0.9 791,532 - DZA65_RS03745 0.50 -0.9 791,532 - DZA65_RS03745 0.50 -0.3 791,532 - DZA65_RS03745 0.50 -1.9 791,532 - DZA65_RS03745 0.50 +2.0 791,532 - DZA65_RS03745 0.50 -0.6 791,532 - DZA65_RS03745 0.50 -1.3 791,532 - DZA65_RS03745 0.50 -2.3 791,532 - DZA65_RS03745 0.50 +0.0 791,532 - DZA65_RS03745 0.50 +0.4 791,532 - DZA65_RS03745 0.50 -0.9 791,532 - DZA65_RS03745 0.50 -0.5 791,533 + DZA65_RS03745 0.50 +0.9 791,533 + DZA65_RS03745 0.50 -1.0 791,534 - DZA65_RS03745 0.50 +1.0 791,534 - DZA65_RS03745 0.50 -2.0 791,649 + DZA65_RS03745 0.61 -0.0 791,649 + DZA65_RS03745 0.61 -0.9 791,650 - DZA65_RS03745 0.61 +0.9 791,650 - DZA65_RS03745 0.61 +0.9 791,658 + DZA65_RS03745 0.62 -0.4 791,659 - DZA65_RS03745 0.62 +0.4 791,674 + DZA65_RS03745 0.64 -0.6
Or see this region's nucleotide sequence