Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03430 and DZA65_RS03435 are separated by 829 nucleotides DZA65_RS03435 and DZA65_RS03440 are separated by 31 nucleotides DZA65_RS03440 and DZA65_RS03445 are separated by 131 nucleotides
DZA65_RS03430: DZA65_RS03430 - acetolactate synthase AlsS, at 722,960 to 724,639
_RS03430
DZA65_RS03435: DZA65_RS03435 - glycine cleavage system aminomethyltransferase GcvT, at 725,469 to 726,569
_RS03435
DZA65_RS03440: DZA65_RS03440 - glycine cleavage system protein GcvH, at 726,601 to 727,008
_RS03440
DZA65_RS03445: DZA65_RS03445 - aminomethyl-transferring glycine dehydrogenase, at 727,140 to 730,013
_RS03445
Position (kb) 725
726
727 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 724.470 kb on - strand, within DZA65_RS03430 at 724.586 kb on + strand at 724.587 kb on - strand at 724.601 kb on + strand at 724.601 kb on + strand at 724.601 kb on + strand at 724.601 kb on + strand at 724.602 kb on - strand at 724.621 kb on + strand at 724.622 kb on - strand at 724.622 kb on - strand at 724.643 kb on + strand at 724.643 kb on + strand at 724.643 kb on + strand at 724.643 kb on + strand at 724.643 kb on + strand at 724.643 kb on + strand at 724.644 kb on - strand at 724.644 kb on - strand at 724.646 kb on + strand at 724.646 kb on + strand at 724.646 kb on + strand at 724.646 kb on + strand at 724.646 kb on + strand at 724.646 kb on + strand at 724.647 kb on - strand at 724.647 kb on - strand at 724.647 kb on - strand at 724.647 kb on - strand at 724.665 kb on - strand at 724.665 kb on - strand at 724.665 kb on - strand at 724.722 kb on + strand at 724.722 kb on + strand at 724.722 kb on + strand at 724.722 kb on + strand at 724.723 kb on - strand at 724.723 kb on - strand at 724.757 kb on + strand at 724.889 kb on - strand at 724.923 kb on + strand at 724.923 kb on + strand at 724.923 kb on + strand at 724.923 kb on + strand at 724.924 kb on - strand at 724.924 kb on - strand at 724.924 kb on - strand at 724.924 kb on - strand at 724.948 kb on - strand at 724.962 kb on + strand at 724.963 kb on - strand at 724.965 kb on + strand at 724.965 kb on + strand at 724.965 kb on + strand at 724.965 kb on + strand at 724.965 kb on + strand at 724.965 kb on + strand at 724.966 kb on - strand at 724.966 kb on - strand at 724.966 kb on - strand at 724.966 kb on - strand at 724.966 kb on - strand at 724.966 kb on - strand at 724.966 kb on - strand at 725.018 kb on + strand at 725.019 kb on - strand at 725.019 kb on - strand at 725.137 kb on + strand at 725.137 kb on + strand at 725.138 kb on - strand at 725.168 kb on + strand at 725.234 kb on + strand at 725.234 kb on + strand at 725.235 kb on - strand at 725.295 kb on + strand at 725.342 kb on + strand at 725.342 kb on + strand at 725.343 kb on - strand at 725.343 kb on - strand at 725.346 kb on + strand at 725.350 kb on + strand at 725.351 kb on - strand at 725.357 kb on - strand at 725.357 kb on - strand at 725.393 kb on + strand at 725.393 kb on + strand at 725.394 kb on - strand at 725.394 kb on - strand at 725.456 kb on + strand at 725.456 kb on + strand at 725.456 kb on + strand at 725.456 kb on + strand at 725.456 kb on + strand at 725.456 kb on + strand at 725.457 kb on - strand at 725.457 kb on - strand at 725.490 kb on + strand at 725.490 kb on + strand at 725.490 kb on + strand at 725.491 kb on - strand at 725.491 kb on - strand at 725.591 kb on + strand, within DZA65_RS03435 at 725.592 kb on - strand, within DZA65_RS03435 at 725.670 kb on + strand, within DZA65_RS03435 at 725.721 kb on + strand, within DZA65_RS03435 at 725.721 kb on + strand, within DZA65_RS03435 at 725.721 kb on + strand, within DZA65_RS03435 at 725.721 kb on + strand, within DZA65_RS03435 at 725.724 kb on - strand, within DZA65_RS03435 at 725.755 kb on + strand, within DZA65_RS03435 at 725.756 kb on - strand, within DZA65_RS03435 at 725.756 kb on - strand, within DZA65_RS03435 at 725.756 kb on - strand, within DZA65_RS03435 at 725.756 kb on - strand, within DZA65_RS03435 at 725.772 kb on + strand, within DZA65_RS03435 at 725.773 kb on - strand, within DZA65_RS03435 at 725.773 kb on - strand, within DZA65_RS03435 at 725.790 kb on + strand, within DZA65_RS03435 at 725.790 kb on + strand, within DZA65_RS03435 at 725.791 kb on - strand, within DZA65_RS03435 at 725.791 kb on - strand, within DZA65_RS03435 at 725.864 kb on + strand, within DZA65_RS03435 at 725.864 kb on + strand, within DZA65_RS03435 at 725.864 kb on + strand, within DZA65_RS03435 at 725.864 kb on + strand, within DZA65_RS03435 at 725.865 kb on - strand, within DZA65_RS03435 at 725.865 kb on - strand, within DZA65_RS03435 at 725.865 kb on - strand, within DZA65_RS03435 at 726.033 kb on + strand, within DZA65_RS03435 at 726.033 kb on + strand, within DZA65_RS03435 at 726.034 kb on - strand, within DZA65_RS03435 at 726.034 kb on - strand, within DZA65_RS03435 at 726.034 kb on - strand, within DZA65_RS03435 at 726.034 kb on - strand, within DZA65_RS03435 at 726.034 kb on - strand, within DZA65_RS03435 at 726.035 kb on + strand, within DZA65_RS03435 at 726.035 kb on + strand, within DZA65_RS03435 at 726.036 kb on - strand, within DZA65_RS03435 at 726.174 kb on + strand, within DZA65_RS03435 at 726.175 kb on - strand, within DZA65_RS03435 at 726.482 kb on + strand at 726.482 kb on + strand at 726.482 kb on + strand at 726.482 kb on + strand at 726.482 kb on + strand at 726.483 kb on - strand at 726.483 kb on - strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.630 kb on + strand at 726.630 kb on + strand at 726.630 kb on + strand at 726.631 kb on - strand at 726.673 kb on + strand, within DZA65_RS03440 at 726.674 kb on - strand, within DZA65_RS03440 at 726.674 kb on - strand, within DZA65_RS03440 at 726.727 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.889 kb on + strand, within DZA65_RS03440 at 726.889 kb on + strand, within DZA65_RS03440 at 726.890 kb on - strand, within DZA65_RS03440 at 727.006 kb on + strand at 727.006 kb on + strand at 727.007 kb on - strand at 727.007 kb on - strand at 727.007 kb on - strand at 727.046 kb on + strand at 727.046 kb on + strand at 727.046 kb on + strand at 727.047 kb on - strand at 727.047 kb on - strand at 727.047 kb on - strand at 727.118 kb on + strand at 727.119 kb on - strand at 727.119 kb on - strand at 727.119 kb on - strand at 727.389 kb on + strand at 727.389 kb on + strand at 727.389 kb on + strand at 727.389 kb on + strand at 727.390 kb on - strand at 727.464 kb on + strand, within DZA65_RS03445 at 727.464 kb on + strand, within DZA65_RS03445 at 727.465 kb on - strand, within DZA65_RS03445 at 727.465 kb on - strand, within DZA65_RS03445 at 727.473 kb on + strand, within DZA65_RS03445 at 727.474 kb on - strand, within DZA65_RS03445 at 727.474 kb on - strand, within DZA65_RS03445 at 727.475 kb on + strand, within DZA65_RS03445 at 727.476 kb on - strand at 727.476 kb on - strand, within DZA65_RS03445 at 727.476 kb on - strand, within DZA65_RS03445
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 724,470 - DZA65_RS03430 0.90 +0.5 724,586 + +0.1 724,587 - -0.9 724,601 + -1.9 724,601 + +0.4 724,601 + +1.7 724,601 + -1.4 724,602 - +1.5 724,621 + +0.7 724,622 - -0.9 724,622 - +0.9 724,643 + -0.4 724,643 + +0.5 724,643 + -1.3 724,643 + +0.1 724,643 + +0.3 724,643 + -0.9 724,644 - -0.2 724,644 - +0.7 724,646 + -0.7 724,646 + +1.2 724,646 + -0.4 724,646 + +0.1 724,646 + -0.6 724,646 + +0.7 724,647 - +0.3 724,647 - -1.9 724,647 - +0.1 724,647 - -0.9 724,665 - -0.3 724,665 - -0.7 724,665 - +0.3 724,722 + -0.1 724,722 + +0.2 724,722 + -0.2 724,722 + -0.3 724,723 - +1.3 724,723 - +0.7 724,757 + -0.1 724,889 - +0.4 724,923 + +0.9 724,923 + -0.4 724,923 + +0.7 724,923 + -1.1 724,924 - +0.4 724,924 - -0.4 724,924 - +0.6 724,924 - -0.9 724,948 - +0.4 724,962 + -1.1 724,963 - -0.3 724,965 + +0.0 724,965 + +0.7 724,965 + -2.3 724,965 + +0.1 724,965 + -0.1 724,965 + +0.1 724,966 - +0.6 724,966 - +0.6 724,966 - -0.3 724,966 - +1.0 724,966 - -0.5 724,966 - -0.2 724,966 - -0.8 725,018 + +1.2 725,019 - +0.3 725,019 - +1.0 725,137 + +0.7 725,137 + +0.2 725,138 - +1.7 725,168 + -0.4 725,234 + +0.5 725,234 + -0.6 725,235 - -0.4 725,295 + +0.5 725,342 + +0.1 725,342 + -0.3 725,343 - -0.3 725,343 - -0.3 725,346 + +1.4 725,350 + +0.9 725,351 - +0.6 725,357 - -2.3 725,357 - -0.1 725,393 + -1.1 725,393 + -1.3 725,394 - +1.0 725,394 - +1.1 725,456 + -1.3 725,456 + +0.1 725,456 + -0.3 725,456 + +0.7 725,456 + +0.1 725,456 + -0.8 725,457 - +1.7 725,457 - +0.7 725,490 + +1.2 725,490 + +1.1 725,490 + -1.2 725,491 - -0.4 725,491 - -2.6 725,591 + DZA65_RS03435 0.11 +0.9 725,592 - DZA65_RS03435 0.11 -0.0 725,670 + DZA65_RS03435 0.18 -0.5 725,721 + DZA65_RS03435 0.23 -0.4 725,721 + DZA65_RS03435 0.23 -0.4 725,721 + DZA65_RS03435 0.23 +0.0 725,721 + DZA65_RS03435 0.23 -0.1 725,724 - DZA65_RS03435 0.23 -0.1 725,755 + DZA65_RS03435 0.26 -1.6 725,756 - DZA65_RS03435 0.26 -1.6 725,756 - DZA65_RS03435 0.26 -1.6 725,756 - DZA65_RS03435 0.26 +0.5 725,756 - DZA65_RS03435 0.26 -0.0 725,772 + DZA65_RS03435 0.28 +0.3 725,773 - DZA65_RS03435 0.28 -0.1 725,773 - DZA65_RS03435 0.28 -0.9 725,790 + DZA65_RS03435 0.29 +0.7 725,790 + DZA65_RS03435 0.29 -1.0 725,791 - DZA65_RS03435 0.29 -0.6 725,791 - DZA65_RS03435 0.29 -1.0 725,864 + DZA65_RS03435 0.36 -1.1 725,864 + DZA65_RS03435 0.36 -0.7 725,864 + DZA65_RS03435 0.36 -0.0 725,864 + DZA65_RS03435 0.36 -1.3 725,865 - DZA65_RS03435 0.36 +0.3 725,865 - DZA65_RS03435 0.36 -0.6 725,865 - DZA65_RS03435 0.36 -0.0 726,033 + DZA65_RS03435 0.51 -0.2 726,033 + DZA65_RS03435 0.51 -1.0 726,034 - DZA65_RS03435 0.51 +0.9 726,034 - DZA65_RS03435 0.51 -1.1 726,034 - DZA65_RS03435 0.51 -1.4 726,034 - DZA65_RS03435 0.51 -0.6 726,034 - DZA65_RS03435 0.51 -2.2 726,035 + DZA65_RS03435 0.51 +0.4 726,035 + DZA65_RS03435 0.51 +1.1 726,036 - DZA65_RS03435 0.51 -1.6 726,174 + DZA65_RS03435 0.64 -1.3 726,175 - DZA65_RS03435 0.64 -0.6 726,482 + -1.4 726,482 + -1.4 726,482 + -2.3 726,482 + -1.6 726,482 + +1.9 726,483 - +1.1 726,483 - +0.4 726,628 + +1.5 726,628 + +0.3 726,628 + -1.2 726,628 + +0.1 726,628 + +0.5 726,628 + -2.6 726,628 + -0.3 726,628 + -1.6 726,628 + +0.7 726,628 + -1.1 726,628 + -0.0 726,628 + -0.6 726,628 + -1.0 726,629 - +0.7 726,629 - -1.3 726,629 - -0.5 726,629 - +0.7 726,629 - +0.1 726,629 - -0.9 726,629 - -1.9 726,629 - -1.3 726,630 + +1.4 726,630 + -0.9 726,630 + -0.9 726,631 - -0.7 726,673 + DZA65_RS03440 0.18 -0.7 726,674 - DZA65_RS03440 0.18 -2.0 726,674 - DZA65_RS03440 0.18 +0.1 726,727 - DZA65_RS03440 0.31 -0.1 726,812 - DZA65_RS03440 0.52 +0.1 726,812 - DZA65_RS03440 0.52 -0.3 726,812 - DZA65_RS03440 0.52 -0.1 726,812 - DZA65_RS03440 0.52 +0.3 726,812 - DZA65_RS03440 0.52 +0.0 726,812 - DZA65_RS03440 0.52 +1.3 726,812 - DZA65_RS03440 0.52 +0.7 726,812 - DZA65_RS03440 0.52 -1.4 726,812 - DZA65_RS03440 0.52 +0.5 726,889 + DZA65_RS03440 0.71 +0.2 726,889 + DZA65_RS03440 0.71 -0.6 726,890 - DZA65_RS03440 0.71 -1.7 727,006 + -0.4 727,006 + +0.1 727,007 - -0.8 727,007 - -0.6 727,007 - +1.7 727,046 + +0.1 727,046 + -0.0 727,046 + -0.8 727,047 - +0.0 727,047 - +0.7 727,047 - -1.1 727,118 + -0.9 727,119 - -0.5 727,119 - +0.3 727,119 - +0.2 727,389 + -0.9 727,389 + +2.9 727,389 + +2.7 727,389 + -2.1 727,390 - -1.4 727,464 + DZA65_RS03445 0.11 +3.7 727,464 + DZA65_RS03445 0.11 +0.9 727,465 - DZA65_RS03445 0.11 +0.7 727,465 - DZA65_RS03445 0.11 -0.6 727,473 + DZA65_RS03445 0.12 -1.0 727,474 - DZA65_RS03445 0.12 +0.5 727,474 - DZA65_RS03445 0.12 -0.3 727,475 + DZA65_RS03445 0.12 -1.6 727,476 - +1.3 727,476 - DZA65_RS03445 0.12 +0.2 727,476 - DZA65_RS03445 0.12 +1.1
Or see this region's nucleotide sequence