Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02375 and DZA65_RS02380 are separated by 132 nucleotides DZA65_RS02380 and DZA65_RS02385 are separated by 73 nucleotides
DZA65_RS02375: DZA65_RS02375 - HD domain-containing protein, at 512,595 to 513,305
_RS02375
DZA65_RS02380: DZA65_RS02380 - IclR family transcriptional regulator, at 513,438 to 514,244
_RS02380
DZA65_RS02385: DZA65_RS02385 - chemotaxis protein, at 514,318 to 515,907
_RS02385
Position (kb) 513
514
515 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 512.492 kb on + strand at 512.493 kb on - strand at 512.507 kb on + strand at 512.551 kb on - strand at 512.551 kb on - strand at 512.554 kb on + strand at 512.554 kb on + strand at 512.555 kb on - strand at 512.555 kb on - strand at 512.555 kb on - strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.602 kb on + strand at 512.602 kb on + strand at 512.624 kb on + strand at 512.625 kb on - strand at 512.625 kb on - strand at 512.631 kb on + strand at 512.631 kb on + strand at 512.631 kb on + strand at 512.631 kb on + strand at 512.632 kb on - strand at 512.632 kb on - strand at 512.632 kb on - strand at 512.632 kb on - strand at 512.632 kb on - strand at 512.636 kb on - strand at 512.636 kb on - strand at 512.636 kb on - strand at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand, within DZA65_RS02375 at 512.885 kb on - strand, within DZA65_RS02375 at 512.885 kb on - strand, within DZA65_RS02375 at 512.933 kb on + strand, within DZA65_RS02375 at 512.936 kb on + strand, within DZA65_RS02375 at 513.021 kb on + strand, within DZA65_RS02375 at 513.021 kb on + strand, within DZA65_RS02375 at 513.021 kb on + strand, within DZA65_RS02375 at 513.022 kb on - strand, within DZA65_RS02375 at 513.022 kb on - strand at 513.022 kb on - strand, within DZA65_RS02375 at 513.022 kb on - strand, within DZA65_RS02375 at 513.022 kb on - strand, within DZA65_RS02375 at 513.102 kb on + strand, within DZA65_RS02375 at 513.102 kb on + strand, within DZA65_RS02375 at 513.103 kb on - strand, within DZA65_RS02375 at 513.167 kb on + strand, within DZA65_RS02375 at 513.350 kb on + strand at 513.350 kb on + strand at 513.350 kb on + strand at 513.350 kb on + strand at 513.350 kb on + strand at 513.350 kb on + strand at 513.351 kb on - strand at 513.351 kb on - strand at 513.351 kb on - strand at 513.351 kb on - strand at 513.359 kb on + strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.383 kb on + strand at 513.383 kb on + strand at 513.383 kb on + strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.399 kb on + strand at 513.464 kb on + strand at 513.464 kb on + strand at 513.464 kb on + strand at 513.464 kb on + strand at 513.465 kb on - strand at 513.465 kb on - strand at 513.465 kb on - strand at 513.465 kb on - strand at 513.514 kb on + strand at 513.515 kb on - strand at 513.515 kb on - strand at 513.515 kb on - strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.525 kb on + strand, within DZA65_RS02380 at 513.526 kb on - strand, within DZA65_RS02380 at 513.651 kb on + strand, within DZA65_RS02380 at 513.651 kb on + strand, within DZA65_RS02380 at 513.651 kb on + strand, within DZA65_RS02380 at 513.792 kb on + strand, within DZA65_RS02380 at 513.793 kb on - strand, within DZA65_RS02380 at 513.830 kb on + strand, within DZA65_RS02380 at 513.830 kb on + strand, within DZA65_RS02380 at 513.830 kb on + strand, within DZA65_RS02380 at 513.831 kb on - strand, within DZA65_RS02380 at 513.831 kb on - strand, within DZA65_RS02380 at 513.831 kb on - strand, within DZA65_RS02380 at 513.849 kb on + strand at 513.849 kb on + strand, within DZA65_RS02380 at 513.850 kb on - strand, within DZA65_RS02380 at 513.850 kb on - strand, within DZA65_RS02380 at 513.975 kb on + strand, within DZA65_RS02380 at 513.976 kb on - strand, within DZA65_RS02380 at 513.976 kb on - strand, within DZA65_RS02380 at 513.977 kb on + strand, within DZA65_RS02380 at 513.977 kb on + strand, within DZA65_RS02380 at 513.978 kb on - strand, within DZA65_RS02380 at 513.978 kb on - strand, within DZA65_RS02380 at 513.978 kb on - strand, within DZA65_RS02380 at 513.983 kb on + strand, within DZA65_RS02380 at 514.090 kb on + strand, within DZA65_RS02380 at 514.090 kb on + strand, within DZA65_RS02380 at 514.116 kb on + strand, within DZA65_RS02380 at 514.116 kb on + strand, within DZA65_RS02380 at 514.116 kb on + strand, within DZA65_RS02380 at 514.117 kb on - strand, within DZA65_RS02380 at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.246 kb on + strand at 514.247 kb on - strand at 514.247 kb on - strand at 514.247 kb on - strand at 514.326 kb on + strand at 514.326 kb on + strand at 514.628 kb on - strand, within DZA65_RS02385 at 514.632 kb on + strand, within DZA65_RS02385 at 514.632 kb on + strand, within DZA65_RS02385 at 514.632 kb on + strand, within DZA65_RS02385 at 514.632 kb on + strand, within DZA65_RS02385 at 514.632 kb on + strand, within DZA65_RS02385 at 514.633 kb on - strand, within DZA65_RS02385 at 514.809 kb on + strand, within DZA65_RS02385 at 514.809 kb on + strand, within DZA65_RS02385 at 514.809 kb on + strand, within DZA65_RS02385 at 514.809 kb on + strand, within DZA65_RS02385 at 514.809 kb on + strand, within DZA65_RS02385 at 514.810 kb on - strand, within DZA65_RS02385 at 514.810 kb on - strand, within DZA65_RS02385 at 514.812 kb on + strand, within DZA65_RS02385 at 514.812 kb on + strand, within DZA65_RS02385 at 514.812 kb on + strand, within DZA65_RS02385 at 514.812 kb on + strand, within DZA65_RS02385 at 514.812 kb on + strand, within DZA65_RS02385 at 514.813 kb on - strand, within DZA65_RS02385 at 514.813 kb on - strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 515.089 kb on + strand, within DZA65_RS02385 at 515.089 kb on + strand, within DZA65_RS02385 at 515.090 kb on - strand, within DZA65_RS02385 at 515.127 kb on + strand, within DZA65_RS02385 at 515.127 kb on + strand, within DZA65_RS02385 at 515.127 kb on + strand, within DZA65_RS02385 at 515.127 kb on + strand, within DZA65_RS02385 at 515.128 kb on - strand, within DZA65_RS02385 at 515.128 kb on - strand, within DZA65_RS02385 at 515.129 kb on + strand at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.177 kb on - strand, within DZA65_RS02385 at 515.177 kb on - strand, within DZA65_RS02385 at 515.184 kb on + strand, within DZA65_RS02385 at 515.184 kb on + strand, within DZA65_RS02385 at 515.184 kb on + strand, within DZA65_RS02385 at 515.184 kb on + strand, within DZA65_RS02385 at 515.184 kb on + strand, within DZA65_RS02385 at 515.185 kb on - strand, within DZA65_RS02385 at 515.185 kb on - strand, within DZA65_RS02385 at 515.185 kb on - strand, within DZA65_RS02385 at 515.185 kb on - strand, within DZA65_RS02385 at 515.228 kb on + strand, within DZA65_RS02385 at 515.228 kb on + strand, within DZA65_RS02385
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 512,492 + -0.2 512,493 - -0.9 512,507 + +0.4 512,551 - -2.2 512,551 - +0.6 512,554 + -1.2 512,554 + +0.8 512,555 - -0.2 512,555 - -1.5 512,555 - +1.6 512,569 + -0.0 512,569 + -0.9 512,569 + -1.4 512,569 + +0.2 512,569 + +1.8 512,569 + +0.4 512,569 + +0.8 512,569 + +0.8 512,570 - +0.2 512,570 - -0.8 512,570 - -0.0 512,570 - -1.2 512,570 - +1.2 512,570 - -1.8 512,570 - +1.0 512,570 - -0.8 512,570 - -1.5 512,570 - +0.2 512,602 + -0.8 512,602 + -0.2 512,624 + -1.0 512,625 - +3.1 512,625 - -0.5 512,631 + -0.8 512,631 + -1.0 512,631 + -1.1 512,631 + -1.8 512,632 - -1.2 512,632 - +0.0 512,632 - -0.4 512,632 - -1.0 512,632 - +2.2 512,636 - +0.2 512,636 - -2.5 512,636 - +0.6 512,884 + DZA65_RS02375 0.41 -1.0 512,884 + DZA65_RS02375 0.41 +1.1 512,884 + -0.8 512,884 + DZA65_RS02375 0.41 -1.2 512,884 + DZA65_RS02375 0.41 +1.1 512,884 + DZA65_RS02375 0.41 -0.9 512,884 + DZA65_RS02375 0.41 +0.4 512,885 - DZA65_RS02375 0.41 -0.2 512,885 - DZA65_RS02375 0.41 -1.2 512,933 + DZA65_RS02375 0.48 +1.4 512,936 + DZA65_RS02375 0.48 -0.9 513,021 + DZA65_RS02375 0.60 +0.2 513,021 + DZA65_RS02375 0.60 +0.0 513,021 + DZA65_RS02375 0.60 -1.5 513,022 - DZA65_RS02375 0.60 -0.2 513,022 - -0.2 513,022 - DZA65_RS02375 0.60 +1.1 513,022 - DZA65_RS02375 0.60 +1.0 513,022 - DZA65_RS02375 0.60 +0.8 513,102 + DZA65_RS02375 0.71 +0.1 513,102 + DZA65_RS02375 0.71 +0.2 513,103 - DZA65_RS02375 0.71 +0.2 513,167 + DZA65_RS02375 0.80 +0.6 513,350 + -0.5 513,350 + -0.3 513,350 + -0.2 513,350 + +0.4 513,350 + +0.4 513,350 + -1.2 513,351 - +0.3 513,351 - -0.8 513,351 - +1.4 513,351 - +0.4 513,359 + -0.4 513,360 - -0.2 513,360 - -0.8 513,360 - -1.5 513,360 - -1.5 513,360 - -0.6 513,360 - +0.6 513,383 + +2.8 513,383 + -0.2 513,383 + +2.2 513,384 - -0.1 513,384 - +1.8 513,384 - -0.2 513,384 - +0.1 513,384 - -0.5 513,384 - -1.2 513,384 - -1.2 513,384 - -1.1 513,399 + -0.4 513,464 + +1.0 513,464 + -2.2 513,464 + -0.0 513,464 + +1.8 513,465 - +0.4 513,465 - +0.2 513,465 - -0.8 513,465 - +1.6 513,514 + +0.5 513,515 - +0.6 513,515 - -0.4 513,515 - +0.5 513,517 + +0.7 513,517 + +0.8 513,517 + +1.9 513,517 + -1.8 513,517 + -0.2 513,517 + -0.5 513,517 + -0.8 513,517 + -0.5 513,518 - +0.2 513,518 - +0.5 513,518 - -0.8 513,518 - +0.3 513,518 - +0.3 513,518 - +0.3 513,518 - -0.2 513,518 - -2.1 513,525 + DZA65_RS02380 0.11 -1.2 513,526 - DZA65_RS02380 0.11 -0.5 513,651 + DZA65_RS02380 0.26 -0.6 513,651 + DZA65_RS02380 0.26 +0.3 513,651 + DZA65_RS02380 0.26 -0.6 513,792 + DZA65_RS02380 0.44 +0.7 513,793 - DZA65_RS02380 0.44 -0.9 513,830 + DZA65_RS02380 0.49 -0.2 513,830 + DZA65_RS02380 0.49 -0.8 513,830 + DZA65_RS02380 0.49 -0.8 513,831 - DZA65_RS02380 0.49 +0.8 513,831 - DZA65_RS02380 0.49 -0.4 513,831 - DZA65_RS02380 0.49 +3.0 513,849 + -0.2 513,849 + DZA65_RS02380 0.51 +0.1 513,850 - DZA65_RS02380 0.51 -0.6 513,850 - DZA65_RS02380 0.51 -0.8 513,975 + DZA65_RS02380 0.67 +0.2 513,976 - DZA65_RS02380 0.67 -1.1 513,976 - DZA65_RS02380 0.67 -0.5 513,977 + DZA65_RS02380 0.67 +0.6 513,977 + DZA65_RS02380 0.67 -0.9 513,978 - DZA65_RS02380 0.67 -1.0 513,978 - DZA65_RS02380 0.67 -1.8 513,978 - DZA65_RS02380 0.67 -1.2 513,983 + DZA65_RS02380 0.68 -1.1 514,090 + DZA65_RS02380 0.81 -1.4 514,090 + DZA65_RS02380 0.81 -0.8 514,116 + DZA65_RS02380 0.84 -0.0 514,116 + DZA65_RS02380 0.84 +0.1 514,116 + DZA65_RS02380 0.84 -0.9 514,117 - DZA65_RS02380 0.84 -1.0 514,242 + +1.4 514,242 + +0.6 514,242 + +1.1 514,242 + +0.4 514,242 + +0.4 514,242 + +0.2 514,242 + -0.6 514,242 + +1.1 514,242 + -0.8 514,242 + +1.0 514,242 + -0.3 514,243 - -0.8 514,243 - -1.2 514,243 - -0.2 514,243 - -1.5 514,243 - +0.1 514,243 - +1.0 514,243 - -0.0 514,246 + -1.1 514,247 - +0.8 514,247 - -0.2 514,247 - -0.2 514,326 + +0.4 514,326 + +0.1 514,628 - DZA65_RS02385 0.19 -0.1 514,632 + DZA65_RS02385 0.20 -0.6 514,632 + DZA65_RS02385 0.20 +0.7 514,632 + DZA65_RS02385 0.20 +0.0 514,632 + DZA65_RS02385 0.20 -0.2 514,632 + DZA65_RS02385 0.20 +0.8 514,633 - DZA65_RS02385 0.20 -1.5 514,809 + DZA65_RS02385 0.31 -1.2 514,809 + DZA65_RS02385 0.31 -0.2 514,809 + DZA65_RS02385 0.31 +0.2 514,809 + DZA65_RS02385 0.31 -2.1 514,809 + DZA65_RS02385 0.31 +0.1 514,810 - DZA65_RS02385 0.31 +0.8 514,810 - DZA65_RS02385 0.31 -0.4 514,812 + DZA65_RS02385 0.31 -0.6 514,812 + DZA65_RS02385 0.31 -1.8 514,812 + DZA65_RS02385 0.31 -0.5 514,812 + DZA65_RS02385 0.31 -0.4 514,812 + DZA65_RS02385 0.31 -0.5 514,813 - DZA65_RS02385 0.31 -1.1 514,813 - DZA65_RS02385 0.31 -0.2 514,851 + DZA65_RS02385 0.34 -0.5 514,851 + DZA65_RS02385 0.34 +0.5 514,851 + DZA65_RS02385 0.34 -1.2 514,851 + DZA65_RS02385 0.34 -2.3 514,851 + DZA65_RS02385 0.34 -0.1 514,851 + DZA65_RS02385 0.34 +0.8 514,851 + DZA65_RS02385 0.34 +1.9 514,852 - DZA65_RS02385 0.34 -0.2 514,852 - DZA65_RS02385 0.34 -0.8 514,852 - DZA65_RS02385 0.34 +0.7 514,852 - DZA65_RS02385 0.34 -0.8 514,852 - DZA65_RS02385 0.34 +1.8 514,852 - DZA65_RS02385 0.34 +0.1 514,852 - DZA65_RS02385 0.34 +0.7 515,089 + DZA65_RS02385 0.48 -1.8 515,089 + DZA65_RS02385 0.48 +1.8 515,090 - DZA65_RS02385 0.49 +0.0 515,127 + DZA65_RS02385 0.51 -0.3 515,127 + DZA65_RS02385 0.51 -0.4 515,127 + DZA65_RS02385 0.51 -0.4 515,127 + DZA65_RS02385 0.51 +1.1 515,128 - DZA65_RS02385 0.51 +1.8 515,128 - DZA65_RS02385 0.51 -0.6 515,129 + +1.8 515,129 + DZA65_RS02385 0.51 -0.3 515,129 + DZA65_RS02385 0.51 -0.3 515,129 + DZA65_RS02385 0.51 -1.5 515,129 + DZA65_RS02385 0.51 -0.9 515,129 + DZA65_RS02385 0.51 -0.2 515,129 + DZA65_RS02385 0.51 -1.5 515,129 + DZA65_RS02385 0.51 +0.5 515,129 + DZA65_RS02385 0.51 +1.0 515,129 + DZA65_RS02385 0.51 +0.1 515,129 + DZA65_RS02385 0.51 -0.8 515,129 + DZA65_RS02385 0.51 -0.7 515,130 - DZA65_RS02385 0.51 +0.0 515,130 - DZA65_RS02385 0.51 -0.1 515,130 - DZA65_RS02385 0.51 -0.1 515,130 - DZA65_RS02385 0.51 -1.0 515,130 - DZA65_RS02385 0.51 +0.4 515,130 - DZA65_RS02385 0.51 -1.2 515,130 - DZA65_RS02385 0.51 -0.6 515,130 - DZA65_RS02385 0.51 -0.2 515,130 - DZA65_RS02385 0.51 -0.8 515,130 - DZA65_RS02385 0.51 -0.5 515,130 - DZA65_RS02385 0.51 -0.7 515,130 - DZA65_RS02385 0.51 -0.2 515,130 - DZA65_RS02385 0.51 -0.0 515,130 - DZA65_RS02385 0.51 +0.0 515,130 - DZA65_RS02385 0.51 -1.5 515,130 - DZA65_RS02385 0.51 +0.4 515,130 - DZA65_RS02385 0.51 -1.0 515,130 - DZA65_RS02385 0.51 -0.5 515,130 - DZA65_RS02385 0.51 +0.8 515,130 - DZA65_RS02385 0.51 +0.6 515,130 - DZA65_RS02385 0.51 -1.1 515,177 - DZA65_RS02385 0.54 +0.1 515,177 - DZA65_RS02385 0.54 -0.3 515,184 + DZA65_RS02385 0.54 -2.3 515,184 + DZA65_RS02385 0.54 +0.8 515,184 + DZA65_RS02385 0.54 +0.4 515,184 + DZA65_RS02385 0.54 -1.3 515,184 + DZA65_RS02385 0.54 +0.5 515,185 - DZA65_RS02385 0.55 +0.3 515,185 - DZA65_RS02385 0.55 +0.3 515,185 - DZA65_RS02385 0.55 -0.2 515,185 - DZA65_RS02385 0.55 +0.8 515,228 + DZA65_RS02385 0.57 -1.2 515,228 + DZA65_RS02385 0.57 +1.8
Or see this region's nucleotide sequence