Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01360

Experiment: Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS01355 and DZA65_RS01360 are separated by 332 nucleotidesDZA65_RS01360 and DZA65_RS01365 are separated by 14 nucleotides DZA65_RS01355: DZA65_RS01355 - tRNA dihydrouridine synthase DusB, at 298,662 to 299,627 _RS01355 DZA65_RS01360: DZA65_RS01360 - 50S ribosomal protein L11 methyltransferase, at 299,960 to 300,847 _RS01360 DZA65_RS01365: DZA65_RS01365 - sodium/pantothenate symporter, at 300,862 to 302,313 _RS01365 Position (kb) 299 300 301Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 298.984 kb on + strand, within DZA65_RS01355at 298.985 kb on - strand, within DZA65_RS01355at 299.019 kb on - strand, within DZA65_RS01355at 299.061 kb on - strand, within DZA65_RS01355at 299.061 kb on - strand, within DZA65_RS01355at 299.061 kb on - strand, within DZA65_RS01355at 299.072 kb on + strand, within DZA65_RS01355at 299.073 kb on - strand, within DZA65_RS01355at 299.081 kb on - strand, within DZA65_RS01355at 299.180 kb on + strand, within DZA65_RS01355at 299.180 kb on + strand, within DZA65_RS01355at 299.181 kb on - strand, within DZA65_RS01355at 299.181 kb on - strand, within DZA65_RS01355at 299.181 kb on - strand, within DZA65_RS01355at 299.221 kb on - strand, within DZA65_RS01355at 299.233 kb on - strand, within DZA65_RS01355at 299.233 kb on - strand, within DZA65_RS01355at 299.447 kb on + strand, within DZA65_RS01355at 299.448 kb on - strand, within DZA65_RS01355at 299.448 kb on - strand, within DZA65_RS01355at 299.451 kb on + strand, within DZA65_RS01355at 299.451 kb on + strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.452 kb on - strand, within DZA65_RS01355at 299.628 kb on - strandat 299.628 kb on - strandat 299.628 kb on - strandat 299.644 kb on + strandat 299.644 kb on + strandat 299.644 kb on + strandat 299.644 kb on + strandat 299.645 kb on - strandat 299.645 kb on - strandat 299.645 kb on - strandat 299.645 kb on - strandat 299.645 kb on - strandat 299.666 kb on - strandat 299.666 kb on - strandat 299.666 kb on - strandat 299.666 kb on - strandat 299.666 kb on - strandat 299.668 kb on - strandat 299.668 kb on - strandat 299.668 kb on - strandat 299.671 kb on - strandat 299.786 kb on + strandat 299.842 kb on - strandat 299.842 kb on - strandat 300.039 kb on + strandat 300.039 kb on + strandat 300.039 kb on + strandat 300.039 kb on + strandat 300.039 kb on + strandat 300.040 kb on - strandat 300.040 kb on - strandat 300.040 kb on - strandat 300.157 kb on + strand, within DZA65_RS01360at 300.158 kb on - strand, within DZA65_RS01360at 300.210 kb on + strand, within DZA65_RS01360at 300.210 kb on + strand, within DZA65_RS01360at 300.210 kb on + strand, within DZA65_RS01360at 300.210 kb on + strand, within DZA65_RS01360at 300.210 kb on + strand, within DZA65_RS01360at 300.211 kb on - strand, within DZA65_RS01360at 300.211 kb on - strand, within DZA65_RS01360at 300.211 kb on - strand, within DZA65_RS01360at 300.211 kb on - strand, within DZA65_RS01360at 300.211 kb on - strand, within DZA65_RS01360at 300.485 kb on + strand, within DZA65_RS01360at 300.642 kb on - strand, within DZA65_RS01360at 300.670 kb on - strand, within DZA65_RS01360at 300.670 kb on - strand, within DZA65_RS01360at 300.670 kb on - strand, within DZA65_RS01360at 300.698 kb on + strand, within DZA65_RS01360at 300.698 kb on + strand, within DZA65_RS01360at 300.820 kb on + strandat 300.821 kb on - strandat 300.847 kb on + strandat 300.847 kb on + strandat 300.847 kb on + strandat 300.847 kb on + strandat 300.847 kb on + strandat 300.847 kb on + strandat 300.848 kb on - strandat 300.848 kb on - strandat 300.940 kb on + strandat 300.941 kb on - strandat 300.941 kb on - strandat 300.941 kb on - strandat 300.941 kb on - strandat 301.007 kb on + strandat 301.008 kb on - strand, within DZA65_RS01365at 301.008 kb on - strand, within DZA65_RS01365at 301.218 kb on + strand, within DZA65_RS01365at 301.218 kb on + strand, within DZA65_RS01365at 301.219 kb on - strand, within DZA65_RS01365at 301.219 kb on - strand, within DZA65_RS01365at 301.220 kb on + strand, within DZA65_RS01365at 301.220 kb on + strand, within DZA65_RS01365at 301.220 kb on + strand, within DZA65_RS01365at 301.220 kb on + strand, within DZA65_RS01365at 301.220 kb on + strand, within DZA65_RS01365at 301.221 kb on - strand, within DZA65_RS01365at 301.221 kb on - strand, within DZA65_RS01365at 301.221 kb on - strand, within DZA65_RS01365at 301.221 kb on - strand, within DZA65_RS01365at 301.221 kb on - strand, within DZA65_RS01365at 301.221 kb on - strand, within DZA65_RS01365at 301.455 kb on + strand, within DZA65_RS01365at 301.468 kb on + strand, within DZA65_RS01365at 301.700 kb on + strand, within DZA65_RS01365at 301.701 kb on - strand, within DZA65_RS01365at 301.701 kb on - strand, within DZA65_RS01365at 301.701 kb on - strand, within DZA65_RS01365at 301.701 kb on - strand, within DZA65_RS01365at 301.701 kb on - strand, within DZA65_RS01365at 301.701 kb on - strand, within DZA65_RS01365at 301.704 kb on + strand, within DZA65_RS01365at 301.704 kb on + strand, within DZA65_RS01365at 301.704 kb on + strand, within DZA65_RS01365at 301.705 kb on - strand, within DZA65_RS01365at 301.753 kb on + strand, within DZA65_RS01365at 301.799 kb on + strand, within DZA65_RS01365at 301.812 kb on + strand, within DZA65_RS01365at 301.839 kb on + strand, within DZA65_RS01365at 301.840 kb on - strand, within DZA65_RS01365at 301.840 kb on - strand, within DZA65_RS01365at 301.840 kb on - strand, within DZA65_RS01365at 301.840 kb on - strand, within DZA65_RS01365at 301.840 kb on - strand, within DZA65_RS01365at 301.841 kb on + strand, within DZA65_RS01365at 301.841 kb on + strand, within DZA65_RS01365at 301.841 kb on + strand, within DZA65_RS01365at 301.841 kb on + strand, within DZA65_RS01365at 301.841 kb on + strand, within DZA65_RS01365at 301.841 kb on + strandat 301.842 kb on - strand, within DZA65_RS01365at 301.842 kb on - strand, within DZA65_RS01365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
remove
298,984 + DZA65_RS01355 0.33 -0.6
298,985 - DZA65_RS01355 0.33 +0.9
299,019 - DZA65_RS01355 0.37 -0.1
299,061 - DZA65_RS01355 0.41 +0.4
299,061 - DZA65_RS01355 0.41 +0.1
299,061 - DZA65_RS01355 0.41 +0.4
299,072 + DZA65_RS01355 0.42 +0.5
299,073 - DZA65_RS01355 0.43 -0.1
299,081 - DZA65_RS01355 0.43 -0.1
299,180 + DZA65_RS01355 0.54 -0.6
299,180 + DZA65_RS01355 0.54 -1.9
299,181 - DZA65_RS01355 0.54 +0.5
299,181 - DZA65_RS01355 0.54 +0.4
299,181 - DZA65_RS01355 0.54 -1.1
299,221 - DZA65_RS01355 0.58 -1.9
299,233 - DZA65_RS01355 0.59 -0.1
299,233 - DZA65_RS01355 0.59 -0.0
299,447 + DZA65_RS01355 0.81 -2.2
299,448 - DZA65_RS01355 0.81 -0.5
299,448 - DZA65_RS01355 0.81 -0.1
299,451 + DZA65_RS01355 0.82 -1.2
299,451 + DZA65_RS01355 0.82 -1.1
299,452 - DZA65_RS01355 0.82 +1.1
299,452 - DZA65_RS01355 0.82 +0.9
299,452 - DZA65_RS01355 0.82 +1.3
299,452 - DZA65_RS01355 0.82 +0.5
299,452 - DZA65_RS01355 0.82 -1.4
299,452 - DZA65_RS01355 0.82 -0.1
299,452 - DZA65_RS01355 0.82 -1.6
299,452 - DZA65_RS01355 0.82 -2.6
299,452 - DZA65_RS01355 0.82 +1.4
299,452 - DZA65_RS01355 0.82 +1.2
299,452 - DZA65_RS01355 0.82 +1.6
299,452 - DZA65_RS01355 0.82 +0.4
299,452 - DZA65_RS01355 0.82 -0.9
299,452 - DZA65_RS01355 0.82 -1.9
299,452 - DZA65_RS01355 0.82 -0.1
299,452 - DZA65_RS01355 0.82 +2.0
299,628 - +0.2
299,628 - +0.2
299,628 - +1.2
299,644 + -1.6
299,644 + -2.4
299,644 + -0.1
299,644 + -2.6
299,645 - +0.2
299,645 - -0.1
299,645 - +1.4
299,645 - +0.0
299,645 - -0.8
299,666 - -0.2
299,666 - -0.9
299,666 - -1.3
299,666 - -0.3
299,666 - +0.7
299,668 - -1.1
299,668 - -0.6
299,668 - -2.9
299,671 - -1.5
299,786 + -0.2
299,842 - +0.5
299,842 - -0.5
300,039 + +0.1
300,039 + -0.6
300,039 + -0.1
300,039 + +2.3
300,039 + +0.5
300,040 - +0.1
300,040 - -0.4
300,040 - -0.3
300,157 + DZA65_RS01360 0.22 +0.5
300,158 - DZA65_RS01360 0.22 -0.5
300,210 + DZA65_RS01360 0.28 +0.9
300,210 + DZA65_RS01360 0.28 +0.5
300,210 + DZA65_RS01360 0.28 -4.0
300,210 + DZA65_RS01360 0.28 +0.9
300,210 + DZA65_RS01360 0.28 -0.2
300,211 - DZA65_RS01360 0.28 -0.6
300,211 - DZA65_RS01360 0.28 -0.1
300,211 - DZA65_RS01360 0.28 -2.4
300,211 - DZA65_RS01360 0.28 -1.6
300,211 - DZA65_RS01360 0.28 +0.9
300,485 + DZA65_RS01360 0.59 +1.3
300,642 - DZA65_RS01360 0.77 +0.8
300,670 - DZA65_RS01360 0.80 -2.1
300,670 - DZA65_RS01360 0.80 -3.3
300,670 - DZA65_RS01360 0.80 -0.1
300,698 + DZA65_RS01360 0.83 -1.1
300,698 + DZA65_RS01360 0.83 -2.2
300,820 + -0.6
300,821 - -1.6
300,847 + -1.5
300,847 + +0.6
300,847 + -0.4
300,847 + -0.9
300,847 + -1.1
300,847 + -0.4
300,848 - -0.1
300,848 - -0.1
300,940 + +0.4
300,941 - +1.1
300,941 - +0.9
300,941 - +0.0
300,941 - -0.9
301,007 + -0.5
301,008 - DZA65_RS01365 0.10 +0.4
301,008 - DZA65_RS01365 0.10 +0.9
301,218 + DZA65_RS01365 0.25 -1.6
301,218 + DZA65_RS01365 0.25 -0.3
301,219 - DZA65_RS01365 0.25 -0.6
301,219 - DZA65_RS01365 0.25 -1.1
301,220 + DZA65_RS01365 0.25 +0.4
301,220 + DZA65_RS01365 0.25 -1.4
301,220 + DZA65_RS01365 0.25 -0.4
301,220 + DZA65_RS01365 0.25 -1.1
301,220 + DZA65_RS01365 0.25 -1.6
301,221 - DZA65_RS01365 0.25 -0.1
301,221 - DZA65_RS01365 0.25 +0.3
301,221 - DZA65_RS01365 0.25 +0.5
301,221 - DZA65_RS01365 0.25 +0.6
301,221 - DZA65_RS01365 0.25 +1.3
301,221 - DZA65_RS01365 0.25 -0.9
301,455 + DZA65_RS01365 0.41 -2.6
301,468 + DZA65_RS01365 0.42 -0.9
301,700 + DZA65_RS01365 0.58 -0.8
301,701 - DZA65_RS01365 0.58 +0.1
301,701 - DZA65_RS01365 0.58 -0.6
301,701 - DZA65_RS01365 0.58 +0.2
301,701 - DZA65_RS01365 0.58 +0.3
301,701 - DZA65_RS01365 0.58 -0.4
301,701 - DZA65_RS01365 0.58 +0.9
301,704 + DZA65_RS01365 0.58 -0.6
301,704 + DZA65_RS01365 0.58 -0.1
301,704 + DZA65_RS01365 0.58 -0.1
301,705 - DZA65_RS01365 0.58 +0.7
301,753 + DZA65_RS01365 0.61 +0.6
301,799 + DZA65_RS01365 0.65 +0.2
301,812 + DZA65_RS01365 0.65 +0.2
301,839 + DZA65_RS01365 0.67 -0.5
301,840 - DZA65_RS01365 0.67 -0.0
301,840 - DZA65_RS01365 0.67 +0.2
301,840 - DZA65_RS01365 0.67 +0.6
301,840 - DZA65_RS01365 0.67 -0.7
301,840 - DZA65_RS01365 0.67 +0.5
301,841 + DZA65_RS01365 0.67 -0.6
301,841 + DZA65_RS01365 0.67 -1.2
301,841 + DZA65_RS01365 0.67 -0.9
301,841 + DZA65_RS01365 0.67 -0.4
301,841 + DZA65_RS01365 0.67 -2.6
301,841 + -1.1
301,842 - DZA65_RS01365 0.67 -1.9
301,842 - DZA65_RS01365 0.67 +0.2

Or see this region's nucleotide sequence