Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00800

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00795 and DZA65_RS00800 overlap by 1 nucleotidesDZA65_RS00800 and DZA65_RS00805 are separated by 151 nucleotides DZA65_RS00795: DZA65_RS00795 - glycosyltransferase family 9 protein, at 178,388 to 179,494 _RS00795 DZA65_RS00800: DZA65_RS00800 - O-antigen ligase family protein, at 179,494 to 180,702 _RS00800 DZA65_RS00805: DZA65_RS00805 - glycosyltransferase family 4 protein, at 180,854 to 181,972 _RS00805 Position (kb) 179 180 181Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 178.555 kb on + strand, within DZA65_RS00795at 178.559 kb on + strand, within DZA65_RS00795at 178.559 kb on + strand, within DZA65_RS00795at 178.684 kb on + strand, within DZA65_RS00795at 178.684 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.697 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.732 kb on + strand, within DZA65_RS00795at 178.792 kb on + strand, within DZA65_RS00795at 178.953 kb on + strand, within DZA65_RS00795at 178.954 kb on - strand, within DZA65_RS00795at 179.039 kb on + strand, within DZA65_RS00795at 179.039 kb on + strand, within DZA65_RS00795at 179.077 kb on + strand, within DZA65_RS00795at 179.077 kb on + strand, within DZA65_RS00795at 179.077 kb on + strand, within DZA65_RS00795at 179.077 kb on + strand, within DZA65_RS00795at 179.176 kb on + strand, within DZA65_RS00795at 179.176 kb on + strand, within DZA65_RS00795at 179.176 kb on + strand, within DZA65_RS00795at 179.221 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.240 kb on + strand, within DZA65_RS00795at 179.299 kb on + strand, within DZA65_RS00795at 179.431 kb on + strandat 179.470 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.478 kb on + strandat 179.479 kb on - strandat 179.492 kb on + strandat 179.493 kb on - strandat 179.499 kb on + strandat 179.499 kb on + strandat 179.526 kb on + strandat 179.545 kb on + strandat 179.545 kb on + strandat 179.545 kb on + strandat 179.698 kb on + strand, within DZA65_RS00800at 179.699 kb on - strand, within DZA65_RS00800at 179.797 kb on - strand, within DZA65_RS00800at 179.962 kb on + strand, within DZA65_RS00800at 179.962 kb on + strand, within DZA65_RS00800at 180.073 kb on + strand, within DZA65_RS00800at 180.073 kb on + strand, within DZA65_RS00800at 180.074 kb on - strand, within DZA65_RS00800at 180.333 kb on - strand, within DZA65_RS00800at 180.426 kb on - strand, within DZA65_RS00800at 180.516 kb on + strand, within DZA65_RS00800at 180.516 kb on + strand, within DZA65_RS00800at 180.666 kb on + strandat 180.673 kb on + strandat 180.674 kb on - strandat 180.674 kb on - strandat 180.696 kb on + strandat 180.696 kb on + strandat 180.696 kb on + strandat 180.697 kb on - strandat 180.735 kb on + strandat 180.762 kb on + strandat 180.763 kb on - strandat 180.779 kb on - strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.806 kb on + strandat 180.807 kb on - strandat 180.807 kb on - strandat 180.807 kb on - strandat 180.807 kb on - strandat 180.807 kb on - strandat 180.807 kb on - strandat 180.811 kb on + strandat 180.811 kb on + strandat 180.811 kb on + strandat 180.822 kb on + strandat 180.823 kb on - strandat 180.823 kb on - strandat 180.823 kb on - strandat 180.823 kb on - strandat 180.823 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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178,555 + DZA65_RS00795 0.15 -2.0
178,559 + DZA65_RS00795 0.15 -3.7
178,559 + DZA65_RS00795 0.15 -1.6
178,684 + DZA65_RS00795 0.27 -1.8
178,684 + DZA65_RS00795 0.27 -1.0
178,697 + DZA65_RS00795 0.28 -0.8
178,697 + DZA65_RS00795 0.28 -1.7
178,697 + DZA65_RS00795 0.28 -2.7
178,697 + DZA65_RS00795 0.28 -1.6
178,697 + DZA65_RS00795 0.28 -2.1
178,732 + DZA65_RS00795 0.31 -2.9
178,732 + DZA65_RS00795 0.31 -1.4
178,732 + DZA65_RS00795 0.31 -1.0
178,732 + DZA65_RS00795 0.31 -2.7
178,732 + DZA65_RS00795 0.31 -1.6
178,792 + DZA65_RS00795 0.36 +0.2
178,953 + DZA65_RS00795 0.51 -1.7
178,954 - DZA65_RS00795 0.51 +0.4
179,039 + DZA65_RS00795 0.59 -0.2
179,039 + DZA65_RS00795 0.59 -2.0
179,077 + DZA65_RS00795 0.62 -0.4
179,077 + DZA65_RS00795 0.62 -0.8
179,077 + DZA65_RS00795 0.62 -2.0
179,077 + DZA65_RS00795 0.62 -0.6
179,176 + DZA65_RS00795 0.71 -1.4
179,176 + DZA65_RS00795 0.71 -2.0
179,176 + DZA65_RS00795 0.71 -1.1
179,221 + DZA65_RS00795 0.75 -2.6
179,240 + DZA65_RS00795 0.77 -1.0
179,240 + DZA65_RS00795 0.77 -1.8
179,240 + DZA65_RS00795 0.77 -1.0
179,240 + DZA65_RS00795 0.77 -2.8
179,240 + DZA65_RS00795 0.77 +1.0
179,299 + DZA65_RS00795 0.82 -0.7
179,431 + -1.2
179,470 + -3.5
179,478 + -1.4
179,478 + -0.8
179,478 + -0.4
179,478 + +0.4
179,478 + +1.6
179,478 + -2.0
179,478 + -0.2
179,478 + +0.1
179,479 - -1.4
179,492 + +0.7
179,493 - -1.8
179,499 + -1.6
179,499 + +1.0
179,526 + +0.0
179,545 + +0.2
179,545 + +2.4
179,545 + -0.4
179,698 + DZA65_RS00800 0.17 -2.0
179,699 - DZA65_RS00800 0.17 -4.1
179,797 - DZA65_RS00800 0.25 -0.6
179,962 + DZA65_RS00800 0.39 -1.6
179,962 + DZA65_RS00800 0.39 -1.6
180,073 + DZA65_RS00800 0.48 -2.0
180,073 + DZA65_RS00800 0.48 -1.0
180,074 - DZA65_RS00800 0.48 -0.5
180,333 - DZA65_RS00800 0.69 -1.0
180,426 - DZA65_RS00800 0.77 -2.0
180,516 + DZA65_RS00800 0.85 -2.9
180,516 + DZA65_RS00800 0.85 -6.4
180,666 + -0.0
180,673 + -0.8
180,674 - +1.0
180,674 - +0.8
180,696 + +0.6
180,696 + +1.6
180,696 + +1.6
180,697 - -1.4
180,735 + -0.4
180,762 + +0.4
180,763 - +1.2
180,779 - +1.6
180,806 + -1.8
180,806 + -1.0
180,806 + +1.3
180,806 + -2.2
180,806 + +0.3
180,806 + +2.0
180,806 + +0.6
180,806 + -0.4
180,806 + +2.2
180,806 + +0.5
180,806 + -0.6
180,806 + -1.9
180,806 + -1.2
180,806 + +0.4
180,807 - +1.4
180,807 - +1.1
180,807 - -1.4
180,807 - -1.6
180,807 - -0.1
180,807 - -0.2
180,811 + +0.2
180,811 + +0.6
180,811 + -0.5
180,822 + -1.0
180,823 - -0.6
180,823 - -1.0
180,823 - -1.4
180,823 - +0.5
180,823 - -0.5

Or see this region's nucleotide sequence