Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00790 and DZA65_RS00795 overlap by 4 nucleotides DZA65_RS00795 and DZA65_RS00800 overlap by 1 nucleotides
DZA65_RS00790: DZA65_RS00790 - glycosyltransferase family 4 protein, at 177,267 to 178,391
_RS00790
DZA65_RS00795: DZA65_RS00795 - glycosyltransferase family 9 protein, at 178,388 to 179,494
_RS00795
DZA65_RS00800: DZA65_RS00800 - O-antigen ligase family protein, at 179,494 to 180,702
_RS00800
Position (kb) 178
179
180 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 177.407 kb on + strand, within DZA65_RS00790 at 177.542 kb on + strand, within DZA65_RS00790 at 177.542 kb on + strand, within DZA65_RS00790 at 177.542 kb on + strand, within DZA65_RS00790 at 177.543 kb on - strand, within DZA65_RS00790 at 178.555 kb on + strand, within DZA65_RS00795 at 178.559 kb on + strand, within DZA65_RS00795 at 178.559 kb on + strand, within DZA65_RS00795 at 178.684 kb on + strand, within DZA65_RS00795 at 178.684 kb on + strand, within DZA65_RS00795 at 178.697 kb on + strand, within DZA65_RS00795 at 178.697 kb on + strand, within DZA65_RS00795 at 178.697 kb on + strand, within DZA65_RS00795 at 178.697 kb on + strand, within DZA65_RS00795 at 178.697 kb on + strand, within DZA65_RS00795 at 178.732 kb on + strand, within DZA65_RS00795 at 178.732 kb on + strand, within DZA65_RS00795 at 178.732 kb on + strand, within DZA65_RS00795 at 178.732 kb on + strand, within DZA65_RS00795 at 178.732 kb on + strand, within DZA65_RS00795 at 178.792 kb on + strand, within DZA65_RS00795 at 178.953 kb on + strand, within DZA65_RS00795 at 178.954 kb on - strand, within DZA65_RS00795 at 179.039 kb on + strand, within DZA65_RS00795 at 179.039 kb on + strand, within DZA65_RS00795 at 179.077 kb on + strand, within DZA65_RS00795 at 179.077 kb on + strand, within DZA65_RS00795 at 179.077 kb on + strand, within DZA65_RS00795 at 179.077 kb on + strand, within DZA65_RS00795 at 179.176 kb on + strand, within DZA65_RS00795 at 179.176 kb on + strand, within DZA65_RS00795 at 179.176 kb on + strand, within DZA65_RS00795 at 179.221 kb on + strand, within DZA65_RS00795 at 179.240 kb on + strand, within DZA65_RS00795 at 179.240 kb on + strand, within DZA65_RS00795 at 179.240 kb on + strand, within DZA65_RS00795 at 179.240 kb on + strand, within DZA65_RS00795 at 179.240 kb on + strand, within DZA65_RS00795 at 179.299 kb on + strand, within DZA65_RS00795 at 179.431 kb on + strand at 179.470 kb on + strand at 179.478 kb on + strand at 179.478 kb on + strand at 179.478 kb on + strand at 179.478 kb on + strand at 179.478 kb on + strand at 179.478 kb on + strand at 179.478 kb on + strand at 179.478 kb on + strand at 179.479 kb on - strand at 179.492 kb on + strand at 179.493 kb on - strand at 179.499 kb on + strand at 179.499 kb on + strand at 179.526 kb on + strand at 179.545 kb on + strand at 179.545 kb on + strand at 179.545 kb on + strand at 179.698 kb on + strand, within DZA65_RS00800 at 179.699 kb on - strand, within DZA65_RS00800 at 179.797 kb on - strand, within DZA65_RS00800 at 179.962 kb on + strand, within DZA65_RS00800 at 179.962 kb on + strand, within DZA65_RS00800 at 180.073 kb on + strand, within DZA65_RS00800 at 180.073 kb on + strand, within DZA65_RS00800 at 180.074 kb on - strand, within DZA65_RS00800 at 180.333 kb on - strand, within DZA65_RS00800 at 180.426 kb on - strand, within DZA65_RS00800
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 177,407 + DZA65_RS00790 0.12 -1.6 177,542 + DZA65_RS00790 0.24 -0.4 177,542 + DZA65_RS00790 0.24 -2.4 177,542 + DZA65_RS00790 0.24 -2.1 177,543 - DZA65_RS00790 0.25 +0.2 178,555 + DZA65_RS00795 0.15 -2.0 178,559 + DZA65_RS00795 0.15 -3.7 178,559 + DZA65_RS00795 0.15 -1.6 178,684 + DZA65_RS00795 0.27 -1.8 178,684 + DZA65_RS00795 0.27 -1.0 178,697 + DZA65_RS00795 0.28 -0.8 178,697 + DZA65_RS00795 0.28 -1.7 178,697 + DZA65_RS00795 0.28 -2.7 178,697 + DZA65_RS00795 0.28 -1.6 178,697 + DZA65_RS00795 0.28 -2.1 178,732 + DZA65_RS00795 0.31 -2.9 178,732 + DZA65_RS00795 0.31 -1.4 178,732 + DZA65_RS00795 0.31 -1.0 178,732 + DZA65_RS00795 0.31 -2.7 178,732 + DZA65_RS00795 0.31 -1.6 178,792 + DZA65_RS00795 0.36 +0.2 178,953 + DZA65_RS00795 0.51 -1.7 178,954 - DZA65_RS00795 0.51 +0.4 179,039 + DZA65_RS00795 0.59 -0.2 179,039 + DZA65_RS00795 0.59 -2.0 179,077 + DZA65_RS00795 0.62 -0.4 179,077 + DZA65_RS00795 0.62 -0.8 179,077 + DZA65_RS00795 0.62 -2.0 179,077 + DZA65_RS00795 0.62 -0.6 179,176 + DZA65_RS00795 0.71 -1.4 179,176 + DZA65_RS00795 0.71 -2.0 179,176 + DZA65_RS00795 0.71 -1.1 179,221 + DZA65_RS00795 0.75 -2.6 179,240 + DZA65_RS00795 0.77 -1.0 179,240 + DZA65_RS00795 0.77 -1.8 179,240 + DZA65_RS00795 0.77 -1.0 179,240 + DZA65_RS00795 0.77 -2.8 179,240 + DZA65_RS00795 0.77 +1.0 179,299 + DZA65_RS00795 0.82 -0.7 179,431 + -1.2 179,470 + -3.5 179,478 + -1.4 179,478 + -0.8 179,478 + -0.4 179,478 + +0.4 179,478 + +1.6 179,478 + -2.0 179,478 + -0.2 179,478 + +0.1 179,479 - -1.4 179,492 + +0.7 179,493 - -1.8 179,499 + -1.6 179,499 + +1.0 179,526 + +0.0 179,545 + +0.2 179,545 + +2.4 179,545 + -0.4 179,698 + DZA65_RS00800 0.17 -2.0 179,699 - DZA65_RS00800 0.17 -4.1 179,797 - DZA65_RS00800 0.25 -0.6 179,962 + DZA65_RS00800 0.39 -1.6 179,962 + DZA65_RS00800 0.39 -1.6 180,073 + DZA65_RS00800 0.48 -2.0 180,073 + DZA65_RS00800 0.48 -1.0 180,074 - DZA65_RS00800 0.48 -0.5 180,333 - DZA65_RS00800 0.69 -1.0 180,426 - DZA65_RS00800 0.77 -2.0
Or see this region's nucleotide sequence