Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22615

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,889,989	+		DZA65_RS22610	0.20	-0.1
4,889,989	+		DZA65_RS22610	0.20	+0.5
4,889,990	-		DZA65_RS22610	0.20	-0.2
4,889,990	-		DZA65_RS22610	0.20	+1.1
4,889,992	+		DZA65_RS22610	0.20	+0.1
4,889,992	+		DZA65_RS22610	0.20	+0.3
4,889,992	+		DZA65_RS22610	0.20	+0.6
4,889,992	+		DZA65_RS22610	0.20	+2.3
4,889,992	+		DZA65_RS22610	0.20	-0.9
4,889,992	+		DZA65_RS22610	0.20	+0.8
4,889,992	+		DZA65_RS22610	0.20	+0.0
4,889,992	+		DZA65_RS22610	0.20	-1.1
4,889,992	+		DZA65_RS22610	0.20	-0.4
4,889,992	+				+0.9
4,889,993	-		DZA65_RS22610	0.20	+1.1
4,889,993	-		DZA65_RS22610	0.20	-1.1
4,889,993	-		DZA65_RS22610	0.20	+0.3
4,889,993	-		DZA65_RS22610	0.20	-0.7
4,889,993	-		DZA65_RS22610	0.20	+0.4
4,889,993	-		DZA65_RS22610	0.20	+0.9
4,889,993	-		DZA65_RS22610	0.20	-1.0
4,889,993	-		DZA65_RS22610	0.20	+0.9
4,889,993	-		DZA65_RS22610	0.20	+0.7
4,890,087	+				-0.1
4,890,115	+		DZA65_RS22610	0.31	+0.5
4,890,115	+		DZA65_RS22610	0.31	-0.1
4,890,115	+		DZA65_RS22610	0.31	-1.1
4,890,115	+		DZA65_RS22610	0.31	+0.9
4,890,116	-		DZA65_RS22610	0.31	-2.9
4,890,127	+		DZA65_RS22610	0.32	+0.7
4,890,128	-		DZA65_RS22610	0.32	+0.5
4,890,128	-		DZA65_RS22610	0.32	-1.1
4,890,150	-		DZA65_RS22610	0.34	+0.3
4,890,169	+		DZA65_RS22610	0.36	-0.4
4,890,169	+		DZA65_RS22610	0.36	+0.2
4,890,169	+		DZA65_RS22610	0.36	-0.4
4,890,169	+		DZA65_RS22610	0.36	+0.1
4,890,169	+		DZA65_RS22610	0.36	+0.9
4,890,170	-		DZA65_RS22610	0.36	+2.2
4,890,170	-		DZA65_RS22610	0.36	+1.5
4,890,206	-		DZA65_RS22610	0.39	-1.7
4,890,206	-		DZA65_RS22610	0.39	+0.8
4,890,245	+		DZA65_RS22610	0.42	+0.6
4,890,245	+		DZA65_RS22610	0.42	+1.3
4,890,245	+		DZA65_RS22610	0.42	+0.5
4,890,245	+		DZA65_RS22610	0.42	-0.1
4,890,245	+		DZA65_RS22610	0.42	+0.5
4,890,245	+		DZA65_RS22610	0.42	+0.2
4,890,245	+		DZA65_RS22610	0.42	-0.3
4,890,245	+		DZA65_RS22610	0.42	-0.5
4,890,245	+		DZA65_RS22610	0.42	+1.3
4,890,245	+		DZA65_RS22610	0.42	+0.9
4,890,246	-		DZA65_RS22610	0.42	-1.4
4,890,246	-		DZA65_RS22610	0.42	-1.4
4,890,246	-		DZA65_RS22610	0.42	-0.4
4,890,246	-		DZA65_RS22610	0.42	+0.0
4,890,246	-		DZA65_RS22610	0.42	-0.0
4,890,246	-		DZA65_RS22610	0.42	+0.8
4,890,248	+		DZA65_RS22610	0.43	-0.1
4,890,277	+		DZA65_RS22610	0.45	+0.8
4,890,467	+		DZA65_RS22610	0.62	+0.7
4,890,467	+		DZA65_RS22610	0.62	+0.1
4,890,467	+		DZA65_RS22610	0.62	+0.1
4,890,467	+		DZA65_RS22610	0.62	-0.2
4,890,467	+		DZA65_RS22610	0.62	+1.3
4,890,467	+		DZA65_RS22610	0.62	+1.3
4,890,468	-		DZA65_RS22610	0.62	+0.8
4,890,468	-		DZA65_RS22610	0.62	-0.6
4,890,468	-		DZA65_RS22610	0.62	+0.0
4,890,468	-		DZA65_RS22610	0.62	-1.4
4,890,560	+		DZA65_RS22610	0.70	+0.2
4,890,560	+		DZA65_RS22610	0.70	+1.2
4,890,560	+		DZA65_RS22610	0.70	+0.4
4,890,561	-		DZA65_RS22610	0.70	-0.4
4,890,640	+		DZA65_RS22610	0.77	-0.9
4,890,651	+		DZA65_RS22610	0.78	+1.3
4,890,652	-		DZA65_RS22610	0.78	-1.1
4,890,700	-		DZA65_RS22610	0.82	-1.1
4,890,700	-		DZA65_RS22610	0.82	+1.9
4,890,712	+		DZA65_RS22610	0.83	-0.4
4,890,745	+		DZA65_RS22610	0.86	-0.1
4,890,755	+				-0.7
4,890,755	+		DZA65_RS22610	0.87	-2.2
4,890,755	+		DZA65_RS22610	0.87	+1.0
4,890,755	+		DZA65_RS22610	0.87	-0.9
4,890,756	-		DZA65_RS22610	0.87	+0.3
4,890,756	-		DZA65_RS22610	0.87	+0.5
4,890,756	-		DZA65_RS22610	0.87	+1.5
4,890,756	-		DZA65_RS22610	0.87	+1.2
4,890,756	-		DZA65_RS22610	0.87	+0.9
4,890,756	-		DZA65_RS22610	0.87	-1.5
4,890,758	+		DZA65_RS22610	0.87	-1.1
4,890,759	-		DZA65_RS22610	0.87	+0.4
4,890,794	-				-0.3
4,890,814	+				-0.7
4,890,908	+				-1.4
4,890,908	+				-0.3
4,890,908	+				-0.3
4,890,908	+				-2.2
4,890,908	+				+0.2
4,890,909	-				-2.1
4,890,909	-				+2.4
4,890,909	-				+0.9
4,890,909	-				-1.9
4,890,909	-				+0.5
4,890,948	+				+5.0
4,890,949	-				+0.7
4,890,949	-				-1.0
4,890,949	-				-0.8
4,891,012	-		DZA65_RS22615	0.11	+1.5
4,891,046	-		DZA65_RS22615	0.14	+0.4
4,891,152	+		DZA65_RS22615	0.25	+1.0
4,891,152	+		DZA65_RS22615	0.25	+0.1
4,891,152	+		DZA65_RS22615	0.25	+0.1
4,891,152	+		DZA65_RS22615	0.25	-0.2
4,891,152	+		DZA65_RS22615	0.25	+2.3
4,891,153	-		DZA65_RS22615	0.25	+1.9
4,891,153	-		DZA65_RS22615	0.25	-1.7
4,891,153	-		DZA65_RS22615	0.25	-0.0
4,891,153	-		DZA65_RS22615	0.25	-0.4
4,891,153	-		DZA65_RS22615	0.25	-0.7
4,891,153	-		DZA65_RS22615	0.25	-0.8
4,891,156	+		DZA65_RS22615	0.25	+0.0
4,891,156	+		DZA65_RS22615	0.25	+0.1
4,891,157	-		DZA65_RS22615	0.25	+0.5
4,891,285	+		DZA65_RS22615	0.38	-0.9
4,891,285	+		DZA65_RS22615	0.38	-0.7
4,891,286	-		DZA65_RS22615	0.38	-0.3
4,891,286	-		DZA65_RS22615	0.38	+1.2
4,891,335	+		DZA65_RS22615	0.43	-2.3
4,891,336	-		DZA65_RS22615	0.43	+1.3
4,891,336	-		DZA65_RS22615	0.43	+0.7
4,891,407	+		DZA65_RS22615	0.50	+0.4
4,891,407	+		DZA65_RS22615	0.50	+0.6
4,891,407	+		DZA65_RS22615	0.50	+2.3
4,891,407	+		DZA65_RS22615	0.50	-1.5
4,891,408	-		DZA65_RS22615	0.50	+0.9
4,891,408	-		DZA65_RS22615	0.50	+0.9
4,891,408	-		DZA65_RS22615	0.50	+0.3
4,891,408	-		DZA65_RS22615	0.50	-0.2
4,891,408	-		DZA65_RS22615	0.50	+0.9
4,891,408	-		DZA65_RS22615	0.50	-0.1
4,891,431	+		DZA65_RS22615	0.52	+0.1
4,891,431	+		DZA65_RS22615	0.52	-1.4
4,891,432	-		DZA65_RS22615	0.53	+0.3
4,891,432	-		DZA65_RS22615	0.53	-0.1
4,891,432	-		DZA65_RS22615	0.53	+0.6
4,891,432	-		DZA65_RS22615	0.53	+0.1
4,891,432	-		DZA65_RS22615	0.53	-0.1
4,891,432	-		DZA65_RS22615	0.53	+1.8
4,891,474	-		DZA65_RS22615	0.57	+0.1
4,891,491	+		DZA65_RS22615	0.58	+0.7
4,891,491	+		DZA65_RS22615	0.58	-0.2
4,891,491	+		DZA65_RS22615	0.58	+0.1
4,891,491	+		DZA65_RS22615	0.58	-2.0
4,891,491	+		DZA65_RS22615	0.58	+0.9
4,891,491	+		DZA65_RS22615	0.58	-1.3
4,891,492	-		DZA65_RS22615	0.59	-2.4
4,891,492	-		DZA65_RS22615	0.59	-0.1
4,891,492	-		DZA65_RS22615	0.59	+1.2
4,891,492	-		DZA65_RS22615	0.59	+2.7
4,891,518	+		DZA65_RS22615	0.61	+0.7
4,891,519	-		DZA65_RS22615	0.61	-0.8
4,891,519	-		DZA65_RS22615	0.61	-1.3
4,891,519	-		DZA65_RS22615	0.61	-0.7
4,891,558	+		DZA65_RS22615	0.65	+1.2
4,891,558	+		DZA65_RS22615	0.65	+1.2
4,891,558	+		DZA65_RS22615	0.65	-2.1
4,891,558	+		DZA65_RS22615	0.65	-0.4
4,891,558	+		DZA65_RS22615	0.65	+1.5
4,891,558	+		DZA65_RS22615	0.65	-0.8
4,891,559	-		DZA65_RS22615	0.65	+0.2
4,891,559	-		DZA65_RS22615	0.65	+1.3
4,891,559	-		DZA65_RS22615	0.65	+1.6
4,891,559	-		DZA65_RS22615	0.65	-0.4
4,891,578	+		DZA65_RS22615	0.67	+0.3
4,891,588	+		DZA65_RS22615	0.68	+0.4
4,891,588	+		DZA65_RS22615	0.68	-0.1
4,891,588	+		DZA65_RS22615	0.68	+2.0
4,891,588	+		DZA65_RS22615	0.68	-0.2
4,891,588	+		DZA65_RS22615	0.68	+1.8
4,891,588	+		DZA65_RS22615	0.68	+1.7
4,891,588	+		DZA65_RS22615	0.68	+0.1
4,891,588	+		DZA65_RS22615	0.68	-0.9
4,891,588	+		DZA65_RS22615	0.68	+0.3
4,891,589	-				+1.9
4,891,589	-		DZA65_RS22615	0.68	+1.1
4,891,589	-		DZA65_RS22615	0.68	+0.3
4,891,589	-		DZA65_RS22615	0.68	+1.8
4,891,589	-		DZA65_RS22615	0.68	-1.4
4,891,589	-		DZA65_RS22615	0.68	+1.0
4,891,589	-		DZA65_RS22615	0.68	-0.9
4,891,589	-		DZA65_RS22615	0.68	-1.7
4,891,589	-		DZA65_RS22615	0.68	-0.5
4,891,589	-		DZA65_RS22615	0.68	+0.1
4,891,737	+		DZA65_RS22615	0.83	+0.2
4,891,737	+		DZA65_RS22615	0.83	+0.5
4,891,738	-		DZA65_RS22615	0.83	+1.1
4,891,738	-		DZA65_RS22615	0.83	-0.9
4,891,738	-		DZA65_RS22615	0.83	+0.6
4,891,738	-		DZA65_RS22615	0.83	+0.1
4,891,738	-		DZA65_RS22615	0.83	-0.9
4,891,764	+		DZA65_RS22615	0.86	+2.1
4,891,786	-		DZA65_RS22615	0.88	-0.3
4,891,804	+		DZA65_RS22615	0.90	+0.7
4,891,804	+		DZA65_RS22615	0.90	+0.5
4,891,804	+		DZA65_RS22615	0.90	+0.5
4,891,804	+		DZA65_RS22615	0.90	-0.3
4,891,804	+		DZA65_RS22615	0.90	-0.3
4,891,804	+		DZA65_RS22615	0.90	+1.0
4,891,804	+		DZA65_RS22615	0.90	-0.4
4,891,804	+		DZA65_RS22615	0.90	+1.7
4,891,804	+		DZA65_RS22615	0.90	-0.2
4,891,804	+		DZA65_RS22615	0.90	-0.7
4,891,805	-		DZA65_RS22615	0.90	-0.3
4,891,805	-		DZA65_RS22615	0.90	+0.4
4,891,805	-		DZA65_RS22615	0.90	-0.4
4,891,805	-		DZA65_RS22615	0.90	-0.7
4,891,805	-		DZA65_RS22615	0.90	-0.1
4,891,805	-		DZA65_RS22615	0.90	-0.7
4,891,805	-		DZA65_RS22615	0.90	-0.3
4,891,805	-		DZA65_RS22615	0.90	-0.9
4,891,806	+		DZA65_RS22615	0.90	-0.4
4,891,806	+		DZA65_RS22615	0.90	-1.1
4,891,806	+		DZA65_RS22615	0.90	+0.2
4,891,806	+		DZA65_RS22615	0.90	-2.1
4,891,806	+		DZA65_RS22615	0.90	-0.1
4,891,807	-		DZA65_RS22615	0.90	-0.1
4,891,807	-		DZA65_RS22615	0.90	+0.9
4,891,807	-		DZA65_RS22615	0.90	+1.9
4,891,807	-		DZA65_RS22615	0.90	-2.1
4,891,807	-		DZA65_RS22615	0.90	-1.0
4,891,819	+				+0.1
4,891,820	-				+0.3
4,891,847	-				+0.2
4,891,851	+				+1.1
4,891,851	+				+0.8
4,891,851	+				-0.3
4,891,851	+				-2.4
4,891,852	-				-1.4
4,891,852	-				-0.5
4,891,860	+				-0.1
4,891,860	+				+1.1
4,891,860	+				+0.4
4,891,860	+				-0.8
4,891,860	+				+0.1
4,891,860	+				+0.5
4,891,860	+				+0.9
4,891,860	+				+0.1
4,891,860	+				+0.7
4,891,860	+				-1.7
4,891,860	+				-2.1
4,891,860	+				+1.1
4,891,860	+				-0.1
4,891,860	+				+0.1
4,891,861	-				+0.3
4,891,861	-				-0.2
4,891,861	-				-0.9
4,891,861	-				-0.2
4,891,861	-				+0.8
4,891,861	-				-1.7
4,891,861	-				-0.7
4,891,861	-				+0.5
4,891,861	-				-0.3
4,891,861	-				-0.9
4,891,861	-				-0.4
4,891,861	-				+1.1
4,891,861	-				+1.3
4,891,861	-				-0.3
4,891,861	-				-0.2
4,891,861	-				-1.5
4,891,861	-				+0.0
4,891,861	-				-0.9
4,891,927	-				+0.5
4,891,974	+				+1.3
4,891,974	+				+0.3
4,891,975	-				-0.2
4,891,975	-				-0.1
4,891,976	+				+0.4
4,891,976	+				-1.5
4,891,976	+				+0.7
4,891,977	-				+0.1
4,891,981	+				+0.7
4,891,982	-				+0.5
4,891,982	-				+0.7
4,891,982	-				+0.2
4,891,994	+				-3.2
4,892,038	+				+1.1
4,892,039	-				+0.8
4,892,071	+				-0.3
4,892,151	+		DZA65_RS22620	0.12	+0.9
4,892,151	+		DZA65_RS22620	0.12	+0.3
4,892,151	+		DZA65_RS22620	0.12	-0.1
4,892,151	+		DZA65_RS22620	0.12	+2.5
4,892,151	+		DZA65_RS22620	0.12	+1.6
4,892,151	+		DZA65_RS22620	0.12	+0.5
4,892,151	+		DZA65_RS22620	0.12	+1.9
4,892,151	+		DZA65_RS22620	0.12	+0.1
4,892,151	+		DZA65_RS22620	0.12	-0.8
4,892,151	+		DZA65_RS22620	0.12	+0.3
4,892,151	+		DZA65_RS22620	0.12	-1.2
4,892,152	-		DZA65_RS22620	0.12	-0.5
4,892,152	-		DZA65_RS22620	0.12	-0.7
4,892,152	-		DZA65_RS22620	0.12	+1.1
4,892,152	-		DZA65_RS22620	0.12	-0.1
4,892,177	+		DZA65_RS22620	0.14	-0.2
4,892,205	+		DZA65_RS22620	0.15	+0.7
4,892,205	+		DZA65_RS22620	0.15	+0.2
4,892,205	+		DZA65_RS22620	0.15	-0.9
4,892,205	+		DZA65_RS22620	0.15	+1.1
4,892,205	+		DZA65_RS22620	0.15	-0.2
4,892,205	+		DZA65_RS22620	0.15	+0.7
4,892,205	+		DZA65_RS22620	0.15	-1.9
4,892,206	-		DZA65_RS22620	0.15	-1.9
4,892,206	-		DZA65_RS22620	0.15	+1.3
4,892,206	-		DZA65_RS22620	0.15	-0.3
4,892,207	+		DZA65_RS22620	0.15	+0.8
4,892,208	-		DZA65_RS22620	0.15	-0.7
4,892,208	-		DZA65_RS22620	0.15	+0.0
4,892,465	+		DZA65_RS22620	0.28	+1.3
4,892,466	-		DZA65_RS22620	0.28	+0.1
4,892,493	+		DZA65_RS22620	0.30	-0.3
4,892,493	+		DZA65_RS22620	0.30	+1.3
4,892,493	+		DZA65_RS22620	0.30	+0.3
4,892,493	+		DZA65_RS22620	0.30	+0.3
4,892,493	+		DZA65_RS22620	0.30	-1.9
4,892,493	+		DZA65_RS22620	0.30	-0.7
4,892,493	+		DZA65_RS22620	0.30	-1.4
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4,892,810	+		DZA65_RS22620	0.45	-2.7
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