Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22030

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,762,390	-		DZA65_RS22020	0.49	+0.1
4,762,428	+		DZA65_RS22020	0.55	+1.1
4,762,428	+		DZA65_RS22020	0.55	+0.5
4,762,428	+		DZA65_RS22020	0.55	+0.9
4,762,428	+		DZA65_RS22020	0.55	+0.6
4,762,428	+		DZA65_RS22020	0.55	+0.3
4,762,428	+		DZA65_RS22020	0.55	+0.3
4,762,429	-		DZA65_RS22020	0.55	+0.7
4,762,429	-		DZA65_RS22020	0.55	+1.3
4,762,429	-		DZA65_RS22020	0.55	+0.0
4,762,476	+		DZA65_RS22020	0.63	-0.1
4,762,476	+		DZA65_RS22020	0.63	-0.7
4,762,477	-		DZA65_RS22020	0.63	+2.5
4,762,477	-		DZA65_RS22020	0.63	+1.7
4,762,489	-		DZA65_RS22020	0.65	-1.7
4,762,533	-		DZA65_RS22020	0.72	+0.5
4,762,533	-		DZA65_RS22020	0.72	-0.3
4,762,559	+		DZA65_RS22020	0.76	-0.4
4,762,560	-		DZA65_RS22020	0.76	-0.3
4,762,610	+		DZA65_RS22020	0.84	-3.1
4,762,611	-		DZA65_RS22020	0.84	+0.5
4,762,611	-		DZA65_RS22020	0.84	-0.5
4,762,611	-		DZA65_RS22020	0.84	+0.7
4,762,620	+		DZA65_RS22020	0.86	+0.2
4,762,623	+		DZA65_RS22020	0.86	+1.1
4,762,663	+				+0.2
4,762,663	+				+0.7
4,762,664	-				-0.6
4,762,680	+				-2.2
4,762,680	+				-0.4
4,762,680	+				-0.3
4,762,681	-				-0.1
4,762,681	-				-0.2
4,762,684	-				+0.5
4,762,707	-				+0.3
4,762,708	+				-2.0
4,762,708	+				-1.3
4,762,708	+				-0.2
4,762,708	+				-0.7
4,762,708	+				-0.1
4,762,708	+				+1.3
4,762,708	+				+0.9
4,762,709	-				+0.6
4,762,709	-				-0.5
4,762,709	-				-0.3
4,762,709	-				+1.2
4,762,721	+				+1.7
4,762,721	+				-0.2
4,762,721	+				+3.3
4,762,721	+				+0.3
4,762,721	+				-0.5
4,762,722	-				+0.5
4,762,722	-				-1.0
4,762,722	-				+0.2
4,762,722	-				+0.3
4,762,722	-				+0.8
4,762,722	-				+0.7
4,762,722	-				+0.3
4,762,725	+				-0.8
4,762,725	+				+0.5
4,762,726	-				+1.2
4,762,726	-				+1.3
4,762,788	+				-0.1
4,762,789	-				-1.1
4,762,789	-				-0.7
4,762,789	-				+0.6
4,762,789	-				+0.3
4,762,789	-				-2.7
4,762,789	-				+0.5
4,762,789	-				-0.3
4,762,789	-				-1.3
4,762,811	-				+0.3
4,762,816	+				-0.5
4,762,816	+				-0.1
4,762,816	+				+0.1
4,762,817	-				+0.5
4,762,817	-				-0.7
4,762,820	-				+0.3
4,762,826	-				+1.0
4,762,828	+				-0.1
4,762,829	-				+1.4
4,762,829	-				+0.4
4,762,829	-				+0.5
4,762,829	-				-0.4
4,762,829	-				-0.1
4,762,837	+				+0.9
4,762,837	+				-0.5
4,762,838	-				+0.8
4,762,838	-				+1.0
4,762,838	-				-0.3
4,762,838	-				-0.1
4,762,955	+		DZA65_RS22025	0.47	-0.5
4,763,024	+		DZA65_RS22025	0.73	-0.8
4,763,025	-		DZA65_RS22025	0.73	+0.7
4,763,104	-				+0.1
4,763,128	+				-0.3
4,763,128	+				-0.1
4,763,128	+				+1.8
4,763,128	+				-1.4
4,763,128	+				+0.7
4,763,128	+				+0.7
4,763,128	+				+0.7
4,763,128	+				+0.3
4,763,128	+				-1.4
4,763,128	+				-2.1
4,763,128	+				+0.7
4,763,128	+				-1.5
4,763,128	+				+0.6
4,763,129	-				-0.8
4,763,129	-				-1.2
4,763,129	-				-0.4
4,763,129	-				+0.3
4,763,129	-				+0.4
4,763,129	-				-2.2
4,763,129	-				+1.1
4,763,129	-				+1.6
4,763,129	-				+0.5
4,763,129	-				-0.4
4,763,129	-				-1.9
4,763,168	+				+0.9
4,763,169	-				-1.6
4,763,172	-				-0.1
4,763,429	+		DZA65_RS22030	0.16	-0.3
4,763,536	+		DZA65_RS22030	0.28	-1.3
4,763,536	+		DZA65_RS22030	0.28	+0.8
4,763,536	+		DZA65_RS22030	0.28	-0.4
4,763,536	+		DZA65_RS22030	0.28	+0.3
4,763,537	-		DZA65_RS22030	0.28	-0.7
4,763,537	-		DZA65_RS22030	0.28	+0.7
4,763,537	-		DZA65_RS22030	0.28	+1.3
4,763,747	+		DZA65_RS22030	0.52	+1.1
4,763,747	+		DZA65_RS22030	0.52	+0.2
4,763,747	+		DZA65_RS22030	0.52	+1.5
4,763,747	+		DZA65_RS22030	0.52	+1.3
4,763,748	-		DZA65_RS22030	0.52	+0.4
4,763,748	-		DZA65_RS22030	0.52	-1.7
4,763,748	-		DZA65_RS22030	0.52	-0.1
4,763,748	-		DZA65_RS22030	0.52	+1.6
4,763,748	-		DZA65_RS22030	0.52	+0.3
4,763,748	-		DZA65_RS22030	0.52	+1.6
4,763,748	-		DZA65_RS22030	0.52	-0.7
4,763,748	-				+1.9
4,763,748	-		DZA65_RS22030	0.52	-0.9
4,763,749	+		DZA65_RS22030	0.53	+1.9
4,763,749	+		DZA65_RS22030	0.53	+0.1
4,763,749	+		DZA65_RS22030	0.53	-0.7
4,763,749	+		DZA65_RS22030	0.53	-0.3
4,763,749	+		DZA65_RS22030	0.53	+0.9
4,763,750	-		DZA65_RS22030	0.53	+0.6
4,763,750	-		DZA65_RS22030	0.53	-0.9
4,763,750	-		DZA65_RS22030	0.53	-0.1
4,763,750	-		DZA65_RS22030	0.53	-2.0
4,763,807	+		DZA65_RS22030	0.59	-1.2
4,763,807	+		DZA65_RS22030	0.59	-1.5
4,763,807	+		DZA65_RS22030	0.59	+0.5
4,763,807	+		DZA65_RS22030	0.59	+1.1
4,763,807	+		DZA65_RS22030	0.59	-0.0
4,763,807	+		DZA65_RS22030	0.59	+0.1
4,763,808	-		DZA65_RS22030	0.59	+2.2
4,763,808	-		DZA65_RS22030	0.59	+0.9
4,763,808	-		DZA65_RS22030	0.59	+0.5
4,763,808	-		DZA65_RS22030	0.59	+0.2
4,763,808	-		DZA65_RS22030	0.59	-1.1
4,763,850	-		DZA65_RS22030	0.64	+0.5
4,763,965	+		DZA65_RS22030	0.78	+0.1
4,763,966	-		DZA65_RS22030	0.78	+0.6
4,763,978	-		DZA65_RS22030	0.79	-1.9
4,763,978	-		DZA65_RS22030	0.79	+0.5
4,764,056	+		DZA65_RS22030	0.88	-1.9
4,764,056	+		DZA65_RS22030	0.88	-0.0
4,764,056	+		DZA65_RS22030	0.88	-1.1
4,764,056	+		DZA65_RS22030	0.88	+0.2
4,764,056	+		DZA65_RS22030	0.88	+1.1
4,764,057	-		DZA65_RS22030	0.88	+0.6
4,764,057	-		DZA65_RS22030	0.88	-0.4
4,764,057	-		DZA65_RS22030	0.88	-0.1
4,764,057	-		DZA65_RS22030	0.88	-0.1
4,764,057	-		DZA65_RS22030	0.88	+0.3
4,764,057	-		DZA65_RS22030	0.88	+0.9
4,764,057	-		DZA65_RS22030	0.88	+0.5
4,764,057	-		DZA65_RS22030	0.88	+1.3
4,764,065	+		DZA65_RS22030	0.89	-0.1
4,764,106	+				-0.3
4,764,130	+				+1.0
4,764,131	-				+0.0
4,764,131	-				+0.0
4,764,142	+				-0.1
4,764,142	+				-0.8
4,764,142	+				-0.4
4,764,142	+				+0.3
4,764,142	+				+0.6
4,764,142	+				+1.3
4,764,142	+				-0.1
4,764,174	+				+0.5
4,764,174	+				-0.2
4,764,174	+				-0.6
4,764,174	+				+0.7
4,764,174	+				-2.4
4,764,174	+				+1.6
4,764,175	-				-0.6
4,764,175	-				-1.1
4,764,175	-				-0.3
4,764,178	+				+0.9
4,764,178	+				+0.1
4,764,179	-				+0.9
4,764,188	-				-2.2
4,764,322	+		DZA65_RS22035	0.12	-0.7
4,764,323	-		DZA65_RS22035	0.12	+1.4
4,764,323	-		DZA65_RS22035	0.12	-0.1
4,764,373	+		DZA65_RS22035	0.17	+1.3
4,764,373	+		DZA65_RS22035	0.17	-1.0
4,764,374	-		DZA65_RS22035	0.17	+0.6
4,764,382	+		DZA65_RS22035	0.18	+0.7
4,764,382	+		DZA65_RS22035	0.18	+0.2
4,764,382	+		DZA65_RS22035	0.18	-0.8
4,764,383	-		DZA65_RS22035	0.18	-0.5
4,764,383	-		DZA65_RS22035	0.18	-2.5
4,764,383	-		DZA65_RS22035	0.18	-1.4
4,764,499	+		DZA65_RS22035	0.28	+0.2
4,764,499	+		DZA65_RS22035	0.28	-0.1
4,764,499	+		DZA65_RS22035	0.28	+1.4
4,764,499	+		DZA65_RS22035	0.28	-0.4
4,764,499	+		DZA65_RS22035	0.28	-0.2
4,764,499	+		DZA65_RS22035	0.28	-0.4
4,764,499	+				+0.9
4,764,499	+		DZA65_RS22035	0.28	+1.7
4,764,499	+		DZA65_RS22035	0.28	-0.5
4,764,499	+		DZA65_RS22035	0.28	-0.3
4,764,499	+		DZA65_RS22035	0.28	+0.1
4,764,500	-		DZA65_RS22035	0.28	+3.4
4,764,500	-		DZA65_RS22035	0.28	-0.3
4,764,500	-		DZA65_RS22035	0.28	-0.7
4,764,500	-		DZA65_RS22035	0.28	-0.1
4,764,500	-		DZA65_RS22035	0.28	+1.7
4,764,500	-		DZA65_RS22035	0.28	+0.7
4,764,500	-		DZA65_RS22035	0.28	-0.1
4,764,500	-		DZA65_RS22035	0.28	+0.8
4,764,575	+		DZA65_RS22035	0.35	-1.1
4,764,575	+		DZA65_RS22035	0.35	-2.8
4,764,575	+		DZA65_RS22035	0.35	+1.9
4,764,575	+		DZA65_RS22035	0.35	-0.5
4,764,576	-		DZA65_RS22035	0.35	+1.4
4,764,591	-		DZA65_RS22035	0.37	-1.2
4,764,608	+		DZA65_RS22035	0.38	+0.2
4,764,609	-		DZA65_RS22035	0.38	+0.9
4,764,609	-		DZA65_RS22035	0.38	-3.1
4,764,609	-		DZA65_RS22035	0.38	+0.7
4,764,609	-		DZA65_RS22035	0.38	-0.9
4,764,625	+		DZA65_RS22035	0.40	-0.7
4,764,625	+		DZA65_RS22035	0.40	-2.2
4,764,626	-		DZA65_RS22035	0.40	-0.5
4,764,671	+		DZA65_RS22035	0.44	-0.5
4,764,677	+		DZA65_RS22035	0.44	+0.5
4,764,677	+		DZA65_RS22035	0.44	-0.8
4,764,677	+		DZA65_RS22035	0.44	+0.0
4,764,677	+		DZA65_RS22035	0.44	+0.4
4,764,677	+		DZA65_RS22035	0.44	-0.2
4,764,677	+		DZA65_RS22035	0.44	-0.2
4,764,678	-		DZA65_RS22035	0.45	+0.1
4,764,678	-		DZA65_RS22035	0.45	+0.2
4,764,678	-		DZA65_RS22035	0.45	-0.5
4,764,678	-		DZA65_RS22035	0.45	-2.1
4,764,678	-		DZA65_RS22035	0.45	-0.9
4,764,678	-		DZA65_RS22035	0.45	+0.1
4,764,678	-		DZA65_RS22035	0.45	+1.2
4,764,983	+		DZA65_RS22035	0.72	+0.6
4,765,012	+		DZA65_RS22035	0.75	+0.8
4,765,012	+		DZA65_RS22035	0.75	-1.0
4,765,012	+		DZA65_RS22035	0.75	-0.7
4,765,013	-		DZA65_RS22035	0.75	-2.1
4,765,013	-		DZA65_RS22035	0.75	-1.4
4,765,030	+		DZA65_RS22035	0.76	+2.7
4,765,030	+		DZA65_RS22035	0.76	-0.4
4,765,040	-		DZA65_RS22035	0.77	-0.2
4,765,112	+		DZA65_RS22035	0.84	+0.8
4,765,112	+		DZA65_RS22035	0.84	+2.3
4,765,112	+		DZA65_RS22035	0.84	+1.6
4,765,112	+		DZA65_RS22035	0.84	-1.2
4,765,112	+		DZA65_RS22035	0.84	-0.9
4,765,112	+		DZA65_RS22035	0.84	+0.7
4,765,112	+		DZA65_RS22035	0.84	+0.2
4,765,113	-		DZA65_RS22035	0.84	-0.3
4,765,113	-		DZA65_RS22035	0.84	-0.8
4,765,132	+		DZA65_RS22035	0.86	+0.4
4,765,132	+		DZA65_RS22035	0.86	-0.4
4,765,132	+		DZA65_RS22035	0.86	+1.3
4,765,132	+		DZA65_RS22035	0.86	-1.4
4,765,132	+		DZA65_RS22035	0.86	-0.1
4,765,132	+		DZA65_RS22035	0.86	+0.1
4,765,132	+		DZA65_RS22035	0.86	-1.3
4,765,132	+		DZA65_RS22035	0.86	-1.0
4,765,132	+		DZA65_RS22035	0.86	-0.1
4,765,133	-		DZA65_RS22035	0.86	+1.5
4,765,133	-		DZA65_RS22035	0.86	+0.3
4,765,133	-		DZA65_RS22035	0.86	+1.3
4,765,133	-		DZA65_RS22035	0.86	-2.4
4,765,133	-		DZA65_RS22035	0.86	+1.2
4,765,133	-		DZA65_RS22035	0.86	+0.2
4,765,133	-		DZA65_RS22035	0.86	+2.3
4,765,133	-		DZA65_RS22035	0.86	+0.1
4,765,133	-		DZA65_RS22035	0.86	-1.0
4,765,133	-		DZA65_RS22035	0.86	-1.2
4,765,133	-		DZA65_RS22035	0.86	-0.5
4,765,133	-		DZA65_RS22035	0.86	+0.1