Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22005

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,756,573	+				+0.3
4,756,573	+				-1.9
4,756,573	+				+1.3
4,756,573	+				+0.1
4,756,573	+				-0.1
4,756,573	+				-0.9
4,756,573	+				-1.2
4,756,574	-				-0.1
4,756,574	-				-2.0
4,756,643	+				-0.7
4,756,643	+				-0.2
4,756,643	+				-1.1
4,756,643	+				-0.3
4,756,643	+				+0.9
4,756,643	+				+0.5
4,756,643	+				+0.9
4,756,643	+				+1.1
4,756,644	-				-2.1
4,756,644	-				-1.1
4,756,647	+				+1.6
4,756,647	+				-1.9
4,756,647	+				+1.5
4,756,647	+				-0.3
4,756,647	+				-0.5
4,756,647	+				-1.7
4,756,647	+				-0.4
4,756,647	+				+1.3
4,756,647	+				-0.7
4,756,648	-				+0.3
4,756,648	-				+0.9
4,756,648	-				-0.9
4,756,648	-				-0.4
4,756,648	-				-0.2
4,756,648	-				-1.4
4,756,648	-				-0.2
4,756,648	-				-0.1
4,756,648	-				+0.6
4,756,651	-				-1.2
4,756,663	+				-2.7
4,756,663	+				-0.1
4,756,663	+				+2.4
4,756,664	-				+0.5
4,756,664	-				-0.2
4,756,664	-				+0.1
4,756,696	+				-0.7
4,756,696	+				+0.5
4,756,814	+				-2.8
4,756,814	+				+1.2
4,756,814	+				-0.4
4,756,814	+				+0.1
4,756,814	+				+0.3
4,756,814	+				-0.1
4,756,814	+				-0.3
4,756,814	+				-1.9
4,756,815	-				-0.4
4,756,815	-				+0.2
4,756,825	+				+0.8
4,756,825	+				+0.4
4,756,825	+				+0.3
4,756,825	+				-0.1
4,756,826	-				-0.9
4,756,830	+				+1.1
4,756,830	+				-0.2
4,756,830	+				-0.4
4,756,830	+				+0.3
4,756,831	-				+0.7
4,756,831	-				+1.2
4,756,831	-				+1.3
4,756,879	-				+2.9
4,756,879	-				-1.1
4,756,879	-				-1.5
4,756,912	+				-0.7
4,756,913	-				+0.9
4,756,913	-				-1.7
4,756,914	+				-0.4
4,756,914	+				-0.3
4,756,914	+				-0.1
4,756,915	-				-1.4
4,756,915	-				+0.3
4,756,915	-				-0.8
4,756,930	+				-1.3
4,756,956	+				-1.1
4,756,956	+				-2.8
4,756,956	+				-0.7
4,756,956	+				-0.1
4,756,956	+				-0.8
4,756,956	+				-0.4
4,756,956	+				-0.4
4,756,956	+				-0.7
4,756,956	+				+0.0
4,756,956	+				-0.1
4,756,957	-				-1.4
4,756,957	-				-0.7
4,756,957	-				-0.4
4,756,960	+				-0.3
4,756,960	+				-1.6
4,756,960	+				-0.1
4,756,960	+				+0.3
4,756,961	-				+0.3
4,756,995	+				-1.8
4,756,995	+				-0.4
4,756,995	+				-0.1
4,756,995	+				-0.9
4,756,995	+				+1.5
4,756,996	-				+1.1
4,756,996	-				-0.7
4,756,996	-				-1.9
4,757,013	+				+0.8
4,757,013	+				+0.4
4,757,013	+				+0.0
4,757,014	-				+1.5
4,757,015	+				+1.3
4,757,015	+				-1.1
4,757,015	+				-0.3
4,757,015	+				+0.9
4,757,016	-				+1.9
4,757,016	-				-0.5
4,757,040	+				-0.2
4,757,040	+				-0.7
4,757,043	+				+1.5
4,757,043	+				-0.2
4,757,043	+				+0.2
4,757,043	+				-2.2
4,757,044	-				-0.2
4,757,044	-				+0.9
4,757,044	-				-0.1
4,757,066	+				-0.2
4,757,066	+				+0.3
4,757,066	+				+0.2
4,757,066	+				+0.1
4,757,066	+				+0.6
4,757,066	+				+0.7
4,757,066	+				-0.6
4,757,067	-				+0.2
4,757,067	-				-2.7
4,757,067	-				-1.2
4,757,067	-				-0.2
4,757,067	-				-1.4
4,757,067	-				-0.6
4,757,067	-				+0.2
4,757,067	-				-1.4
4,757,067	-				+0.9
4,757,101	+		DZA65_RS22000	0.20	+0.7
4,757,101	+		DZA65_RS22000	0.20	-0.1
4,757,102	-		DZA65_RS22000	0.20	-0.5
4,757,111	+		DZA65_RS22000	0.23	+0.2
4,757,155	+		DZA65_RS22000	0.36	-0.5
4,757,155	+		DZA65_RS22000	0.36	+1.2
4,757,155	+		DZA65_RS22000	0.36	-1.7
4,757,155	+		DZA65_RS22000	0.36	-0.4
4,757,156	-		DZA65_RS22000	0.36	-0.1
4,757,156	-		DZA65_RS22000	0.36	-1.3
4,757,156	-		DZA65_RS22000	0.36	-1.1
4,757,156	-		DZA65_RS22000	0.36	-1.1
4,757,161	+		DZA65_RS22000	0.38	-0.7
4,757,161	+		DZA65_RS22000	0.38	-0.1
4,757,161	+		DZA65_RS22000	0.38	+0.4
4,757,161	+		DZA65_RS22000	0.38	+0.3
4,757,161	+		DZA65_RS22000	0.38	+1.9
4,757,162	-		DZA65_RS22000	0.38	+0.9
4,757,162	-		DZA65_RS22000	0.38	+1.8
4,757,162	-		DZA65_RS22000	0.38	-0.4
4,757,162	-		DZA65_RS22000	0.38	-1.1
4,757,162	-		DZA65_RS22000	0.38	-1.9
4,757,162	-		DZA65_RS22000	0.38	+0.9
4,757,227	+		DZA65_RS22000	0.57	+0.0
4,757,227	+		DZA65_RS22000	0.57	+0.5
4,757,228	-		DZA65_RS22000	0.57	+0.4
4,757,233	+		DZA65_RS22000	0.59	+0.8
4,757,233	+		DZA65_RS22000	0.59	-1.1
4,757,233	+		DZA65_RS22000	0.59	-0.4
4,757,233	+		DZA65_RS22000	0.59	+0.8
4,757,233	+		DZA65_RS22000	0.59	-0.3
4,757,233	+		DZA65_RS22000	0.59	+0.1
4,757,234	-		DZA65_RS22000	0.59	-0.4
4,757,234	-				+0.5
4,757,234	-		DZA65_RS22000	0.59	+1.3
4,757,234	-		DZA65_RS22000	0.59	-0.8
4,757,234	-		DZA65_RS22000	0.59	+0.2
4,757,234	-		DZA65_RS22000	0.59	-1.9
4,757,234	-		DZA65_RS22000	0.59	+1.3
4,757,234	-		DZA65_RS22000	0.59	+0.3
4,757,245	+		DZA65_RS22000	0.62	+0.7
4,757,246	-		DZA65_RS22000	0.63	-0.7
4,757,357	+				-0.7
4,757,404	-				-0.1
4,757,404	-				+0.3
4,757,456	+				+0.3
4,757,456	+				+0.3
4,757,456	+				+0.9
4,757,456	+				+0.6
4,757,456	+				-2.1
4,757,456	+				-2.8
4,757,456	+				-0.3
4,757,457	-				-0.9
4,757,457	-				+0.3
4,757,457	-				+2.3
4,757,457	-				+0.2
4,757,457	-				+0.9
4,757,490	+				-0.4
4,757,490	+				+1.3
4,757,490	+				+1.1
4,757,490	+				+1.9
4,757,491	-				+0.3
4,757,491	-				+1.9
4,757,491	-				+0.4
4,757,497	+				-0.7
4,757,498	-				-0.7
4,757,498	-				+0.7
4,757,498	-				-0.1
4,757,504	+				+4.3
4,757,505	-				-1.3
4,757,505	-				-1.3
4,757,505	-				+0.5
4,757,505	-				-0.5
4,757,556	-				-1.2
4,757,707	+		DZA65_RS22005	0.10	-0.1
4,757,707	+		DZA65_RS22005	0.10	+0.6
4,757,708	-		DZA65_RS22005	0.10	+0.9
4,757,708	-		DZA65_RS22005	0.10	+0.3
4,757,739	-		DZA65_RS22005	0.12	-0.7
4,757,739	-		DZA65_RS22005	0.12	+0.6
4,757,739	-		DZA65_RS22005	0.12	-0.7
4,757,795	+		DZA65_RS22005	0.16	-0.1
4,757,795	+		DZA65_RS22005	0.16	-1.2
4,757,795	+		DZA65_RS22005	0.16	+0.1
4,757,796	-		DZA65_RS22005	0.16	-1.3
4,757,796	-		DZA65_RS22005	0.16	-1.3
4,757,859	+		DZA65_RS22005	0.20	-0.7
4,757,859	+		DZA65_RS22005	0.20	-0.3
4,757,924	+		DZA65_RS22005	0.25	-1.4
4,758,006	+		DZA65_RS22005	0.30	-1.5
4,758,129	+		DZA65_RS22005	0.38	-0.7
4,758,130	-		DZA65_RS22005	0.38	+0.0
4,758,130	-		DZA65_RS22005	0.38	-1.1
4,758,130	-		DZA65_RS22005	0.38	-1.1
4,758,130	-		DZA65_RS22005	0.38	-1.1
4,758,243	-		DZA65_RS22005	0.46	-0.8
4,758,243	-		DZA65_RS22005	0.46	-1.4
4,758,245	+		DZA65_RS22005	0.46	-1.1
4,758,245	+		DZA65_RS22005	0.46	-2.2
4,758,246	-		DZA65_RS22005	0.46	-0.6
4,758,246	-		DZA65_RS22005	0.46	-1.2
4,758,253	+		DZA65_RS22005	0.46	-0.9
4,758,253	+		DZA65_RS22005	0.46	-1.0
4,758,254	-		DZA65_RS22005	0.46	-2.1
4,758,315	+		DZA65_RS22005	0.50	-0.3
4,758,315	+		DZA65_RS22005	0.50	-1.7
4,758,315	+		DZA65_RS22005	0.50	-1.7
4,758,316	-		DZA65_RS22005	0.50	+1.6
4,758,316	-		DZA65_RS22005	0.50	-0.9
4,758,510	+		DZA65_RS22005	0.63	-1.4
4,758,510	+		DZA65_RS22005	0.63	+0.2
4,758,511	-		DZA65_RS22005	0.63	-0.5
4,758,513	+		DZA65_RS22005	0.64	-0.1
4,758,514	-		DZA65_RS22005	0.64	+0.9
4,758,540	-		DZA65_RS22005	0.65	-1.2
4,758,540	-		DZA65_RS22005	0.65	-0.1
4,758,660	+		DZA65_RS22005	0.73	-1.8
4,758,799	-		DZA65_RS22005	0.83	+0.3
4,758,826	+		DZA65_RS22005	0.84	-0.9
4,758,827	-		DZA65_RS22005	0.84	-1.2
4,758,827	-		DZA65_RS22005	0.84	-2.1
4,758,933	-				-1.7
4,758,933	-				+1.5
4,758,933	-				-1.2
4,758,986	+				-1.6
4,759,001	-				-0.1
4,759,001	-				+0.2
4,759,062	+				-0.1
4,759,063	-				-2.1
4,759,070	-				-0.8
4,759,078	+				-2.2
4,759,078	+				+0.9
4,759,079	-				+0.8
4,759,079	-				-1.7
4,759,079	-				-0.3
4,759,079	-				+1.3
4,759,079	-				+0.1
4,759,079	-				-0.1
4,759,142	+				-0.1
4,759,142	+				+0.7
4,759,142	+				-2.0
4,759,142	+				+1.1
4,759,143	-				+0.5
4,759,152	+				-2.1
4,759,152	+				+0.4
4,759,153	-				+0.1
4,759,185	+				-0.3
4,759,319	+				-0.5
4,759,319	+				+0.4
4,759,320	-				-0.7
4,759,321	+				+0.2
4,759,368	+				+0.3
4,759,368	+				-1.1
4,759,368	+				-1.7
4,759,368	+				-0.2
4,759,369	-				+0.9
4,759,369	-				-0.2
4,759,369	-				-0.1
4,759,388	+				+0.1
4,759,388	+				+0.9
4,759,388	+				+0.6
4,759,388	+				+0.1
4,759,388	+				+0.7
4,759,388	+				-0.1
4,759,388	+				-0.7
4,759,388	+				+0.3
4,759,388	+				-0.4
4,759,388	+				+0.2
4,759,389	-				-1.2
4,759,389	-				-0.1
4,759,389	-				+0.6
4,759,389	-				-0.8
4,759,389	-				-0.4
4,759,389	-				-1.7
4,759,389	-				-1.9
4,759,538	-		DZA65_RS22010	0.14	-0.8
4,759,555	+		DZA65_RS22010	0.15	+0.2
4,759,555	+		DZA65_RS22010	0.15	-1.7
4,759,555	+		DZA65_RS22010	0.15	-1.4
4,759,556	-		DZA65_RS22010	0.16	-1.1
4,759,556	-		DZA65_RS22010	0.16	+0.8
4,759,556	-		DZA65_RS22010	0.16	+0.3
4,759,567	-		DZA65_RS22010	0.16	-2.7
4,759,567	-		DZA65_RS22010	0.16	+0.3
4,759,600	+		DZA65_RS22010	0.19	-2.3
4,759,648	+		DZA65_RS22010	0.23	+0.4
4,759,648	+		DZA65_RS22010	0.23	-0.6
4,759,649	-		DZA65_RS22010	0.23	+0.2
4,759,649	-		DZA65_RS22010	0.23	-0.1
4,759,649	-		DZA65_RS22010	0.23	+0.0
4,759,707	+		DZA65_RS22010	0.28	-0.4
4,759,707	+		DZA65_RS22010	0.28	-1.0
4,759,708	-		DZA65_RS22010	0.28	+0.1
4,759,734	+		DZA65_RS22010	0.31	+0.6
4,759,818	-		DZA65_RS22010	0.38	-1.5
4,759,818	-		DZA65_RS22010	0.38	-1.1
4,759,959	+		DZA65_RS22010	0.50	-0.9
4,759,959	+		DZA65_RS22010	0.50	-0.4
4,759,959	+		DZA65_RS22010	0.50	+0.5
4,759,959	+		DZA65_RS22010	0.50	+1.2
4,759,959	+		DZA65_RS22010	0.50	+3.3
4,759,960	-				-1.1
4,759,960	-		DZA65_RS22010	0.50	+0.5
4,760,049	+		DZA65_RS22010	0.57	-0.8
4,760,050	-		DZA65_RS22010	0.57	-0.9
4,760,050	-		DZA65_RS22010	0.57	-0.4
4,760,050	-		DZA65_RS22010	0.57	+0.3
4,760,058	+		DZA65_RS22010	0.58	+0.4
4,760,059	-		DZA65_RS22010	0.58	+0.4