Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20355

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,411,375	+		DZA65_RS20350	0.28	-0.2
4,411,440	+		DZA65_RS20350	0.33	-0.6
4,411,541	-		DZA65_RS20350	0.41	+0.4
4,411,541	-		DZA65_RS20350	0.41	-2.4
4,411,541	-		DZA65_RS20350	0.41	+0.1
4,411,563	-		DZA65_RS20350	0.42	-0.2
4,411,586	-		DZA65_RS20350	0.44	+1.5
4,411,603	+		DZA65_RS20350	0.45	-2.0
4,411,603	+		DZA65_RS20350	0.45	+0.3
4,411,603	+		DZA65_RS20350	0.45	-0.8
4,411,603	+		DZA65_RS20350	0.45	+2.1
4,411,603	+		DZA65_RS20350	0.45	-1.5
4,411,604	-		DZA65_RS20350	0.46	+0.4
4,411,604	-		DZA65_RS20350	0.46	-1.8
4,411,604	-		DZA65_RS20350	0.46	-2.2
4,411,604	-				-0.8
4,411,604	-		DZA65_RS20350	0.46	+0.8
4,411,606	+		DZA65_RS20350	0.46	+1.1
4,411,606	+		DZA65_RS20350	0.46	-0.8
4,411,606	+		DZA65_RS20350	0.46	-0.8
4,411,606	+		DZA65_RS20350	0.46	-2.1
4,411,606	+		DZA65_RS20350	0.46	+0.8
4,411,606	+		DZA65_RS20350	0.46	+0.6
4,411,606	+		DZA65_RS20350	0.46	+0.2
4,411,606	+		DZA65_RS20350	0.46	-0.1
4,411,606	+		DZA65_RS20350	0.46	+1.2
4,411,606	+		DZA65_RS20350	0.46	-0.8
4,411,606	+		DZA65_RS20350	0.46	-1.0
4,411,606	+		DZA65_RS20350	0.46	-0.8
4,411,606	+		DZA65_RS20350	0.46	+1.8
4,411,606	+		DZA65_RS20350	0.46	-1.1
4,411,606	+		DZA65_RS20350	0.46	+0.0
4,411,606	+		DZA65_RS20350	0.46	-2.2
4,411,606	+		DZA65_RS20350	0.46	-0.8
4,411,606	+		DZA65_RS20350	0.46	+0.5
4,411,606	+		DZA65_RS20350	0.46	-0.7
4,411,607	-		DZA65_RS20350	0.46	+2.4
4,411,607	-		DZA65_RS20350	0.46	+0.5
4,411,607	-		DZA65_RS20350	0.46	+0.4
4,411,607	-		DZA65_RS20350	0.46	-0.4
4,411,607	-		DZA65_RS20350	0.46	-0.6
4,411,607	-		DZA65_RS20350	0.46	+0.0
4,411,607	-		DZA65_RS20350	0.46	-0.5
4,411,607	-		DZA65_RS20350	0.46	-0.6
4,411,607	-		DZA65_RS20350	0.46	+1.1
4,411,607	-		DZA65_RS20350	0.46	+0.2
4,411,607	-		DZA65_RS20350	0.46	-1.4
4,411,607	-		DZA65_RS20350	0.46	-2.0
4,411,607	-		DZA65_RS20350	0.46	-1.8
4,411,607	-		DZA65_RS20350	0.46	-1.0
4,411,607	-		DZA65_RS20350	0.46	+1.8
4,411,607	-		DZA65_RS20350	0.46	-0.2
4,411,626	+		DZA65_RS20350	0.47	+1.4
4,411,627	-		DZA65_RS20350	0.47	+1.2
4,411,702	+		DZA65_RS20350	0.53	-0.2
4,411,703	-		DZA65_RS20350	0.53	+0.2
4,411,771	+		DZA65_RS20350	0.58	-0.9
4,411,771	+		DZA65_RS20350	0.58	-0.5
4,411,771	+		DZA65_RS20350	0.58	+3.0
4,411,771	+		DZA65_RS20350	0.58	+0.8
4,411,771	+		DZA65_RS20350	0.58	+0.5
4,411,772	-		DZA65_RS20350	0.58	-0.5
4,411,772	-		DZA65_RS20350	0.58	-1.4
4,411,772	-		DZA65_RS20350	0.58	-1.0
4,411,804	+		DZA65_RS20350	0.61	-0.2
4,411,804	+		DZA65_RS20350	0.61	-2.2
4,411,804	+		DZA65_RS20350	0.61	+0.8
4,411,804	+		DZA65_RS20350	0.61	+0.1
4,411,804	+		DZA65_RS20350	0.61	-0.8
4,411,804	+		DZA65_RS20350	0.61	-2.5
4,411,804	+		DZA65_RS20350	0.61	-2.2
4,411,804	+		DZA65_RS20350	0.61	-1.2
4,411,804	+		DZA65_RS20350	0.61	+0.4
4,411,804	+		DZA65_RS20350	0.61	+1.2
4,411,804	+		DZA65_RS20350	0.61	+0.6
4,411,805	-		DZA65_RS20350	0.61	-0.4
4,411,805	-		DZA65_RS20350	0.61	-0.1
4,411,805	-		DZA65_RS20350	0.61	-0.2
4,411,805	-		DZA65_RS20350	0.61	-2.2
4,411,805	-		DZA65_RS20350	0.61	+2.4
4,411,805	-		DZA65_RS20350	0.61	-0.6
4,411,831	+				-1.2
4,411,831	+		DZA65_RS20350	0.63	-0.2
4,411,832	-		DZA65_RS20350	0.63	+1.5
4,411,832	-		DZA65_RS20350	0.63	+0.8
4,411,832	-		DZA65_RS20350	0.63	-1.0
4,411,832	-		DZA65_RS20350	0.63	-0.8
4,411,967	+		DZA65_RS20350	0.74	+0.0
4,412,090	+		DZA65_RS20350	0.83	+1.3
4,412,105	+		DZA65_RS20350	0.84	-0.5
4,412,106	-		DZA65_RS20350	0.84	-2.1
4,412,106	-		DZA65_RS20350	0.84	+1.3
4,412,125	+		DZA65_RS20350	0.86	-0.8
4,412,125	+		DZA65_RS20350	0.86	-1.8
4,412,125	+		DZA65_RS20350	0.86	+0.3
4,412,125	+		DZA65_RS20350	0.86	-0.3
4,412,125	+		DZA65_RS20350	0.86	+0.5
4,412,125	+		DZA65_RS20350	0.86	-0.9
4,412,126	-		DZA65_RS20350	0.86	+0.1
4,412,126	-		DZA65_RS20350	0.86	-0.3
4,412,126	-		DZA65_RS20350	0.86	-0.7
4,412,126	-		DZA65_RS20350	0.86	-2.4
4,412,127	+		DZA65_RS20350	0.86	-0.8
4,412,127	+		DZA65_RS20350	0.86	+1.1
4,412,127	+		DZA65_RS20350	0.86	-0.6
4,412,127	+		DZA65_RS20350	0.86	-0.9
4,412,127	+		DZA65_RS20350	0.86	-0.9
4,412,141	+		DZA65_RS20350	0.87	+0.4
4,412,141	+		DZA65_RS20350	0.87	-0.4
4,412,141	+				-0.8
4,412,141	+		DZA65_RS20350	0.87	+0.1
4,412,142	-		DZA65_RS20350	0.87	-0.2
4,412,142	-		DZA65_RS20350	0.87	+0.1
4,412,142	-		DZA65_RS20350	0.87	+0.8
4,412,142	-		DZA65_RS20350	0.87	-0.5
4,412,142	-		DZA65_RS20350	0.87	+0.1
4,412,143	+		DZA65_RS20350	0.87	+0.8
4,412,143	+		DZA65_RS20350	0.87	-0.4
4,412,144	-		DZA65_RS20350	0.87	-0.5
4,412,144	-		DZA65_RS20350	0.87	+1.6
4,412,144	-		DZA65_RS20350	0.87	-0.4
4,412,144	-		DZA65_RS20350	0.87	-0.6
4,412,144	-		DZA65_RS20350	0.87	+0.4
4,412,144	-		DZA65_RS20350	0.87	+1.6
4,412,146	+		DZA65_RS20350	0.87	+0.9
4,412,146	+		DZA65_RS20350	0.87	-1.2
4,412,146	+		DZA65_RS20350	0.87	+0.2
4,412,146	+		DZA65_RS20350	0.87	+0.0
4,412,146	+		DZA65_RS20350	0.87	-1.7
4,412,147	-		DZA65_RS20350	0.87	-0.1
4,412,147	-		DZA65_RS20350	0.87	-1.8
4,412,147	-		DZA65_RS20350	0.87	+0.6
4,412,147	-		DZA65_RS20350	0.87	+0.1
4,412,147	-		DZA65_RS20350	0.87	-1.0
4,412,147	-		DZA65_RS20350	0.87	-2.7
4,412,147	-		DZA65_RS20350	0.87	-0.1
4,412,147	-		DZA65_RS20350	0.87	-1.8
4,412,147	-		DZA65_RS20350	0.87	+0.3
4,412,248	+				-0.9
4,412,307	+				+2.4
4,412,307	+				-0.9
4,412,307	+				-0.2
4,412,307	+				+0.8
4,412,307	+				-0.5
4,412,307	+				+0.0
4,412,307	+				-2.0
4,412,307	+				+0.2
4,412,307	+				-1.1
4,412,307	+				-2.0
4,412,307	+				+1.4
4,412,307	+				+0.6
4,412,307	+				+0.8
4,412,307	+				+0.7
4,412,308	-				+0.4
4,412,308	-				-0.1
4,412,308	-				-0.2
4,412,308	-				+0.2
4,412,308	-				+0.6
4,412,308	-				+0.0
4,412,308	-				+0.8
4,412,371	+				+0.4
4,412,434	+				-0.2
4,412,511	-		DZA65_RS20355	0.11	-0.5
4,412,511	-		DZA65_RS20355	0.11	-0.8
4,412,602	-		DZA65_RS20355	0.18	-2.5
4,412,890	+		DZA65_RS20355	0.38	-1.5
4,412,891	-		DZA65_RS20355	0.39	-2.2
4,412,891	-		DZA65_RS20355	0.39	-1.2
4,412,891	-		DZA65_RS20355	0.39	+0.1
4,412,902	-		DZA65_RS20355	0.39	+0.5
4,413,139	-		DZA65_RS20355	0.57	-0.8
4,413,258	+		DZA65_RS20355	0.65	-0.4
4,413,259	-		DZA65_RS20355	0.65	-0.6
4,413,259	-				-1.2
4,413,259	-		DZA65_RS20355	0.65	-1.2
4,413,290	-		DZA65_RS20355	0.68	-1.2
4,413,290	-		DZA65_RS20355	0.68	-0.2
4,413,290	-		DZA65_RS20355	0.68	-1.2
4,413,401	-		DZA65_RS20355	0.76	-1.8
4,413,421	+		DZA65_RS20355	0.77	-1.0
4,413,734	+				+0.6
4,413,734	+				+0.9
4,413,786	+				-0.5
4,413,805	+				-2.2
4,413,811	+				-0.5
4,413,811	+				+1.8
4,413,811	+				+0.8
4,413,812	-				+0.2
4,413,823	+				+1.1
4,413,838	+				+0.5
4,413,838	+				-1.4
4,413,839	-				-0.3
4,413,839	-				+0.1
4,413,839	-				-0.2
4,413,839	-				+1.5
4,413,839	-				+0.6
4,413,839	-				-0.5
4,413,847	+				-0.4
4,413,847	+				+0.5
4,413,847	+				+0.8
4,413,847	+				+1.0
4,413,847	+				+0.1
4,413,847	+				-0.3
4,413,848	-				-0.4
4,413,848	-				-1.1
4,413,849	+				-0.8
4,413,849	+				+0.3
4,413,937	-		DZA65_RS20360	0.23	+0.0
4,413,958	+		DZA65_RS20360	0.28	-0.8
4,413,958	+		DZA65_RS20360	0.28	+0.9
4,413,958	+		DZA65_RS20360	0.28	+1.8
4,413,959	-		DZA65_RS20360	0.28	-0.7
4,413,959	-		DZA65_RS20360	0.28	+0.4
4,413,959	-		DZA65_RS20360	0.28	+0.1
4,413,959	-		DZA65_RS20360	0.28	-0.0
4,413,979	-		DZA65_RS20360	0.33	+0.1
4,413,979	-		DZA65_RS20360	0.33	+0.3
4,413,979	-		DZA65_RS20360	0.33	-1.5
4,413,979	-		DZA65_RS20360	0.33	+0.3
4,413,979	-		DZA65_RS20360	0.33	+0.6
4,414,039	+		DZA65_RS20360	0.47	+0.5
4,414,039	+		DZA65_RS20360	0.47	-0.2
4,414,039	+		DZA65_RS20360	0.47	-0.2
4,414,039	+		DZA65_RS20360	0.47	+0.2
4,414,040	-		DZA65_RS20360	0.47	-0.5
4,414,040	-		DZA65_RS20360	0.47	+0.0
4,414,040	-				+0.8
4,414,041	+		DZA65_RS20360	0.47	+0.7
4,414,042	-		DZA65_RS20360	0.48	+0.1
4,414,042	-		DZA65_RS20360	0.48	+0.3
4,414,042	-		DZA65_RS20360	0.48	-0.4
4,414,054	+		DZA65_RS20360	0.50	-0.1
4,414,057	+		DZA65_RS20360	0.51	+0.0
4,414,057	+		DZA65_RS20360	0.51	+0.3
4,414,057	+		DZA65_RS20360	0.51	-0.6
4,414,057	+		DZA65_RS20360	0.51	-1.1
4,414,057	+		DZA65_RS20360	0.51	-0.3
4,414,057	+		DZA65_RS20360	0.51	-0.6
4,414,058	-		DZA65_RS20360	0.51	-1.2
4,414,058	-		DZA65_RS20360	0.51	+1.4
4,414,058	-		DZA65_RS20360	0.51	+2.0
4,414,061	+		DZA65_RS20360	0.52	-0.4
4,414,061	+		DZA65_RS20360	0.52	-0.6
4,414,062	-		DZA65_RS20360	0.52	-2.2
4,414,062	-		DZA65_RS20360	0.52	+1.1
4,414,081	+		DZA65_RS20360	0.57	+0.3
4,414,082	-		DZA65_RS20360	0.57	-0.4
4,414,093	+		DZA65_RS20360	0.60	-0.5
4,414,093	+		DZA65_RS20360	0.60	+1.5
4,414,093	+		DZA65_RS20360	0.60	+0.3
4,414,094	-		DZA65_RS20360	0.60	+0.3
4,414,094	-		DZA65_RS20360	0.60	-0.3
4,414,094	-		DZA65_RS20360	0.60	-1.0
4,414,131	+		DZA65_RS20360	0.69	+1.1
4,414,138	+		DZA65_RS20360	0.70	-0.2
4,414,138	+		DZA65_RS20360	0.70	-0.8
4,414,139	-		DZA65_RS20360	0.70	-0.7
4,414,143	+		DZA65_RS20360	0.71	+0.3
4,414,143	+				+1.8
4,414,143	+		DZA65_RS20360	0.71	-1.4
4,414,143	+		DZA65_RS20360	0.71	-0.6
4,414,143	+		DZA65_RS20360	0.71	+0.8
4,414,144	-		DZA65_RS20360	0.72	+0.8
4,414,144	-		DZA65_RS20360	0.72	+0.8
4,414,151	-		DZA65_RS20360	0.73	-1.0
4,414,204	-		DZA65_RS20360	0.86	-0.3
4,414,283	+				-1.3
4,414,283	+				+0.2
4,414,283	+				+1.3
4,414,283	+				+0.2
4,414,283	+				+1.0
4,414,283	+				+0.3
4,414,284	-				+0.8
4,414,284	-				+0.2
4,414,284	-				+2.4
4,414,305	+				-0.2
4,414,305	+				-1.1
4,414,305	+				-0.6
4,414,306	-				-0.2
4,414,306	-				+3.0
4,414,322	+		DZA65_RS20365	0.16	-0.1
4,414,378	+		DZA65_RS20365	0.43	+0.3
4,414,388	+		DZA65_RS20365	0.48	-1.0
4,414,389	-		DZA65_RS20365	0.49	+1.5
4,414,454	+		DZA65_RS20365	0.80	+0.2
4,414,461	+		DZA65_RS20365	0.84	+0.0
4,414,461	+		DZA65_RS20365	0.84	+0.1
4,414,461	+		DZA65_RS20365	0.84	+1.1
4,414,462	-		DZA65_RS20365	0.84	+1.5
4,414,462	-		DZA65_RS20365	0.84	+1.0
4,414,475	+				+1.6
4,414,493	+				+0.5
4,414,493	+				-2.0
4,414,493	+				+0.1
4,414,493	+				-0.2
4,414,493	+				+0.2
4,414,494	-				-0.8
4,414,494	-				-0.2
4,414,494	-				+0.2
4,414,494	-				-1.1
4,414,499	+				+0.8
4,414,515	+				-0.1
4,414,515	+				-0.9
4,414,516	-				-0.1
4,414,517	+				+1.0
4,414,517	+				+0.7
4,414,517	+				+0.5
4,414,517	+				+0.6
4,414,517	+				+1.2
4,414,517	+				-0.9
4,414,517	+				+0.5
4,414,517	+				+2.2
4,414,517	+				-0.6
4,414,518	-				-1.8
4,414,518	-				-0.2
4,414,518	-				-0.4
4,414,518	-				-1.2
4,414,518	-				+1.4
4,414,518	-				+0.0
4,414,518	-				+0.5
4,414,518	-				-0.1
4,414,518	-				+0.2
4,414,518	-				+0.4
4,414,518	-				+0.8
4,414,518	-				+1.1
4,414,518	-				+2.5
4,414,518	-				+1.2
4,414,518	-				+0.9
4,414,518	-				+1.5
4,414,518	-				+0.7
4,414,518	-				+0.2
4,414,543	+				-0.9
4,414,543	+				-2.8
4,414,565	+				+0.1
4,414,574	+				+0.2
4,414,574	+				-2.2
4,414,574	+				+2.2
4,414,574	+				+2.0
4,414,575	-				-0.2
4,414,575	-				+0.0
4,414,584	+				-1.2
4,414,585	-				-1.2
4,414,596	+		DZA65_RS20370	0.11	-0.1
4,414,596	+		DZA65_RS20370	0.11	-0.7
4,414,596	+		DZA65_RS20370	0.11	-1.5
4,414,597	-		DZA65_RS20370	0.11	+0.2
4,414,597	-		DZA65_RS20370	0.11	-0.1
4,414,609	+		DZA65_RS20370	0.14	-0.6
4,414,609	+		DZA65_RS20370	0.14	-1.1
4,414,610	-		DZA65_RS20370	0.14	-1.1
4,414,610	-		DZA65_RS20370	0.14	-0.3
4,414,656	+		DZA65_RS20370	0.26	+0.9
4,414,656	+		DZA65_RS20370	0.26	-0.3
4,414,656	+		DZA65_RS20370	0.26	-1.4
4,414,657	-		DZA65_RS20370	0.27	+0.0
4,414,657	-		DZA65_RS20370	0.27	-0.8
4,414,657	-		DZA65_RS20370	0.27	+0.6
4,414,683	+		DZA65_RS20370	0.33	-1.0
4,414,693	+		DZA65_RS20370	0.36	-0.9
4,414,693	+		DZA65_RS20370	0.36	+1.9
4,414,693	+		DZA65_RS20370	0.36	+0.2
4,414,693	+		DZA65_RS20370	0.36	-1.2
4,414,693	+		DZA65_RS20370	0.36	+2.2
4,414,694	-		DZA65_RS20370	0.36	+0.2
4,414,694	-		DZA65_RS20370	0.36	+0.8