Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20275

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,396,932	+		DZA65_RS20270	0.57	-0.1
4,396,932	+		DZA65_RS20270	0.57	-1.9
4,396,932	+		DZA65_RS20270	0.57	-0.5
4,396,932	+		DZA65_RS20270	0.57	+2.4
4,396,932	+		DZA65_RS20270	0.57	+0.8
4,396,933	-		DZA65_RS20270	0.57	+0.4
4,396,940	+		DZA65_RS20270	0.57	-2.0
4,396,940	+		DZA65_RS20270	0.57	-0.3
4,396,940	+		DZA65_RS20270	0.57	-0.4
4,396,941	-		DZA65_RS20270	0.57	-2.8
4,396,941	-		DZA65_RS20270	0.57	+0.0
4,396,989	+		DZA65_RS20270	0.60	+0.2
4,396,990	-		DZA65_RS20270	0.61	-0.3
4,396,990	-		DZA65_RS20270	0.61	+0.5
4,396,995	+		DZA65_RS20270	0.61	+0.5
4,396,996	-		DZA65_RS20270	0.61	-0.5
4,397,028	+		DZA65_RS20270	0.63	+0.4
4,397,029	-		DZA65_RS20270	0.63	-0.2
4,397,029	-		DZA65_RS20270	0.63	-1.1
4,397,029	-		DZA65_RS20270	0.63	-1.3
4,397,029	-		DZA65_RS20270	0.63	-1.5
4,397,043	+		DZA65_RS20270	0.64	-0.3
4,397,163	+		DZA65_RS20270	0.71	+1.8
4,397,163	+		DZA65_RS20270	0.71	-0.7
4,397,163	+		DZA65_RS20270	0.71	+0.3
4,397,187	+		DZA65_RS20270	0.73	+0.8
4,397,187	+		DZA65_RS20270	0.73	-1.1
4,397,187	+		DZA65_RS20270	0.73	+0.7
4,397,187	+		DZA65_RS20270	0.73	-0.9
4,397,188	-		DZA65_RS20270	0.73	-0.9
4,397,188	-		DZA65_RS20270	0.73	-2.2
4,397,188	-		DZA65_RS20270	0.73	+1.0
4,397,188	-		DZA65_RS20270	0.73	+0.2
4,397,191	+		DZA65_RS20270	0.73	-0.2
4,397,191	+		DZA65_RS20270	0.73	-1.5
4,397,191	+		DZA65_RS20270	0.73	-0.6
4,397,191	+		DZA65_RS20270	0.73	+0.1
4,397,192	-		DZA65_RS20270	0.73	-0.2
4,397,192	-		DZA65_RS20270	0.73	-0.8
4,397,192	-		DZA65_RS20270	0.73	-2.2
4,397,192	-		DZA65_RS20270	0.73	+0.6
4,397,192	-		DZA65_RS20270	0.73	-0.5
4,397,251	+		DZA65_RS20270	0.77	+0.3
4,397,312	-		DZA65_RS20270	0.81	-0.5
4,397,483	+				-1.2
4,397,491	+				-1.3
4,397,581	+				+0.5
4,397,581	+				+0.1
4,397,581	+				+0.2
4,397,582	-				+1.0
4,397,582	-				+0.8
4,397,582	-				-0.4
4,397,632	+				-0.4
4,397,632	+				+0.8
4,397,704	+				-0.2
4,397,704	+				-0.0
4,397,866	-				+0.4
4,397,866	-				-0.8
4,397,866	-				+0.1
4,397,911	+				-0.4
4,397,944	+				-1.2
4,397,944	+				+0.1
4,398,019	+		DZA65_RS20275	0.10	+0.8
4,398,052	+		DZA65_RS20275	0.14	-1.9
4,398,052	+		DZA65_RS20275	0.14	+0.0
4,398,066	+		DZA65_RS20275	0.15	-1.8
4,398,067	-		DZA65_RS20275	0.15	+0.1
4,398,067	-		DZA65_RS20275	0.15	+0.6
4,398,067	-		DZA65_RS20275	0.15	-1.2
4,398,067	-				+2.1
4,398,114	+		DZA65_RS20275	0.20	-0.6
4,398,114	+		DZA65_RS20275	0.20	-0.2
4,398,114	+		DZA65_RS20275	0.20	+0.4
4,398,115	-		DZA65_RS20275	0.21	-0.8
4,398,141	+		DZA65_RS20275	0.23	-2.8
4,398,141	+		DZA65_RS20275	0.23	-0.2
4,398,142	-		DZA65_RS20275	0.23	-1.8
4,398,142	-		DZA65_RS20275	0.23	-1.8
4,398,195	+		DZA65_RS20275	0.29	-1.4
4,398,195	+		DZA65_RS20275	0.29	+0.3
4,398,196	-		DZA65_RS20275	0.29	-0.8
4,398,196	-		DZA65_RS20275	0.29	-0.8
4,398,227	-		DZA65_RS20275	0.33	-2.8
4,398,340	+		DZA65_RS20275	0.45	-1.2
4,398,340	+		DZA65_RS20275	0.45	-0.4
4,398,340	+		DZA65_RS20275	0.45	-1.2
4,398,340	+		DZA65_RS20275	0.45	-0.8
4,398,340	+		DZA65_RS20275	0.45	-1.9
4,398,340	+		DZA65_RS20275	0.45	-1.5
4,398,340	+		DZA65_RS20275	0.45	+1.0
4,398,340	+		DZA65_RS20275	0.45	-0.3
4,398,340	+		DZA65_RS20275	0.45	-3.5
4,398,340	+		DZA65_RS20275	0.45	-1.5
4,398,340	+		DZA65_RS20275	0.45	-0.1
4,398,340	+		DZA65_RS20275	0.45	+0.8
4,398,340	+		DZA65_RS20275	0.45	-1.2
4,398,341	-		DZA65_RS20275	0.45	-0.8
4,398,341	-		DZA65_RS20275	0.45	+0.3
4,398,341	-		DZA65_RS20275	0.45	-2.2
4,398,341	-		DZA65_RS20275	0.45	-1.4
4,398,341	-		DZA65_RS20275	0.45	-0.5
4,398,341	-		DZA65_RS20275	0.45	-0.2
4,398,341	-		DZA65_RS20275	0.45	-0.1
4,398,341	-		DZA65_RS20275	0.45	-1.7
4,398,341	-		DZA65_RS20275	0.45	-0.2
4,398,341	-		DZA65_RS20275	0.45	+0.5
4,398,351	+		DZA65_RS20275	0.46	-0.2
4,398,351	+		DZA65_RS20275	0.46	+0.2
4,398,351	+		DZA65_RS20275	0.46	-0.5
4,398,352	-		DZA65_RS20275	0.46	-0.3
4,398,352	-		DZA65_RS20275	0.46	-0.5
4,398,352	-		DZA65_RS20275	0.46	-2.0
4,398,352	-		DZA65_RS20275	0.46	-1.8
4,398,396	+		DZA65_RS20275	0.51	-1.5
4,398,396	+		DZA65_RS20275	0.51	-1.5
4,398,396	+		DZA65_RS20275	0.51	-1.4
4,398,396	+		DZA65_RS20275	0.51	-1.0
4,398,396	+		DZA65_RS20275	0.51	+0.6
4,398,442	+		DZA65_RS20275	0.56	-1.2
4,398,442	+		DZA65_RS20275	0.56	-3.0
4,398,442	+		DZA65_RS20275	0.56	-1.0
4,398,442	+		DZA65_RS20275	0.56	+0.2
4,398,443	-		DZA65_RS20275	0.56	-0.9
4,398,443	-		DZA65_RS20275	0.56	+0.8
4,398,443	-		DZA65_RS20275	0.56	-1.7
4,398,443	-		DZA65_RS20275	0.56	-0.5
4,398,443	-		DZA65_RS20275	0.56	-1.4
4,398,443	-		DZA65_RS20275	0.56	-0.6
4,398,469	+		DZA65_RS20275	0.59	-1.3
4,398,470	-		DZA65_RS20275	0.59	-1.9
4,398,495	+		DZA65_RS20275	0.61	-1.2
4,398,496	-		DZA65_RS20275	0.62	-1.5
4,398,588	+		DZA65_RS20275	0.71	-0.3
4,398,588	+		DZA65_RS20275	0.71	+2.2
4,398,589	-		DZA65_RS20275	0.72	-1.2
4,398,589	-		DZA65_RS20275	0.72	+0.1
4,398,854	-				-2.0
4,398,859	+				-2.8
4,398,859	+				-0.4
4,398,859	+				-1.2
4,398,859	+				-1.1
4,398,860	-				-0.6
4,398,860	-				-0.4
4,398,860	-				-0.6
4,398,860	-				-1.2
4,398,860	-				+0.1
4,398,860	-				+0.1
4,398,860	-				-1.2
4,398,860	-				-0.9
4,398,870	-				-0.9
4,398,870	-				-0.6
4,398,903	+				+1.5
4,398,947	+				+0.5
4,398,947	+				+0.3
4,398,947	+				+1.1
4,398,947	+				-0.3
4,398,947	+				-1.8
4,398,948	-				-1.8
4,398,948	-				-0.4
4,398,948	-				-1.5
4,398,948	-				-0.9
4,398,988	+				+0.4
4,398,988	+				+0.8
4,398,988	+				-2.2
4,398,988	+				-0.9
4,398,988	+				+0.7
4,398,988	+				-0.0
4,398,988	+				-0.1
4,398,988	+				-0.7
4,398,988	+				-0.4
4,398,989	-				+1.1
4,398,989	-				-1.2
4,398,989	-				-0.2
4,398,989	-				-0.2
4,398,989	-				+0.8
4,398,989	-				+0.4
4,398,989	-				-0.9
4,398,989	-				+1.8
4,399,005	+				+0.8
4,399,006	-				+1.4
4,399,006	-				-0.2
4,399,006	-				-0.8
4,399,006	-				-2.5
4,399,013	-				+0.8
4,399,019	+				-0.5
4,399,019	+				+0.1
4,399,020	-				-0.8
4,399,020	-				+0.9
4,399,020	-				+0.4
4,399,020	-				+1.2
4,399,040	+				+0.1
4,399,041	-				-1.9
4,399,041	-				-1.4
4,399,084	+				+0.4
4,399,084	+				+0.5
4,399,085	-				-2.7
4,399,085	-				-0.3
4,399,095	+				-0.6
4,399,095	+				-1.2
4,399,095	+				-0.3
4,399,096	-				-0.2
4,399,096	-				+1.5
4,399,096	-				+0.0
4,399,096	-				+0.5
4,399,138	+				+0.8
4,399,138	+				-0.5
4,399,138	+				-1.5
4,399,139	-				+0.6
4,399,139	-				+1.0
4,399,139	-				-0.0
4,399,139	-				+0.5
4,399,139	-				-0.6
4,399,167	-				+0.4