Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19990

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,324,305	+		DZA65_RS19985	0.59	+2.1
4,324,306	-		DZA65_RS19985	0.59	+1.0
4,324,306	-		DZA65_RS19985	0.59	+0.4
4,324,357	+		DZA65_RS19985	0.63	-1.2
4,324,357	+		DZA65_RS19985	0.63	-0.8
4,324,358	-		DZA65_RS19985	0.63	+2.2
4,324,358	-		DZA65_RS19985	0.63	-0.2
4,324,358	-		DZA65_RS19985	0.63	-0.7
4,324,358	-		DZA65_RS19985	0.63	+0.0
4,324,358	-		DZA65_RS19985	0.63	+0.4
4,324,397	+		DZA65_RS19985	0.66	+2.1
4,324,397	+		DZA65_RS19985	0.66	-0.4
4,324,505	+		DZA65_RS19985	0.74	+0.8
4,324,505	+		DZA65_RS19985	0.74	+1.5
4,324,505	+		DZA65_RS19985	0.74	-0.5
4,324,505	+		DZA65_RS19985	0.74	+0.8
4,324,505	+		DZA65_RS19985	0.74	+0.0
4,324,505	+		DZA65_RS19985	0.74	+0.3
4,324,506	-		DZA65_RS19985	0.74	-0.8
4,324,506	-		DZA65_RS19985	0.74	+0.2
4,324,506	-		DZA65_RS19985	0.74	-0.2
4,324,506	-		DZA65_RS19985	0.74	+1.1
4,324,509	+		DZA65_RS19985	0.74	+0.2
4,324,509	+		DZA65_RS19985	0.74	-0.8
4,324,509	+		DZA65_RS19985	0.74	+0.8
4,324,510	-		DZA65_RS19985	0.74	-1.2
4,324,510	-		DZA65_RS19985	0.74	+0.4
4,324,510	-		DZA65_RS19985	0.74	+1.1
4,324,542	+		DZA65_RS19985	0.76	-0.5
4,324,543	-		DZA65_RS19985	0.76	-0.2
4,324,735	+				+1.0
4,324,938	-				-0.1
4,325,035	+				+0.4
4,325,035	+				-1.3
4,325,035	+				+0.5
4,325,036	-				-1.5
4,325,036	-				+0.7
4,325,036	-				+0.9
4,325,036	-				-0.1
4,325,036	-				-0.2
4,325,036	-				-1.2
4,325,047	+				+0.3
4,325,047	+				-0.8
4,325,047	+				-0.2
4,325,047	+				-0.1
4,325,047	+				-0.3
4,325,047	+				-1.5
4,325,048	-				+0.3
4,325,048	-				-0.1
4,325,048	-				-0.6
4,325,048	-				+0.3
4,325,048	-				+0.2
4,325,048	-				-0.9
4,325,048	-				+1.4
4,325,048	-				-1.1
4,325,056	+				-1.5
4,325,056	+				+0.1
4,325,056	+				+0.8
4,325,056	+				-0.2
4,325,057	-				-0.2
4,325,057	-				-0.5
4,325,057	-				-0.8
4,325,057	-				-0.2
4,325,057	-				-0.9
4,325,062	+				+1.5
4,325,062	+				+1.8
4,325,062	+				-0.3
4,325,063	-				-2.7
4,325,063	-				+0.8
4,325,063	-				+0.8
4,325,065	+				-1.5
4,325,066	-				+0.4
4,325,088	+				+0.8
4,325,088	+				+1.4
4,325,088	+				-0.4
4,325,089	-				-0.2
4,325,089	-				-0.2
4,325,090	+				+0.2
4,325,090	+				-0.8
4,325,090	+				+0.8
4,325,090	+				-0.6
4,325,090	+				-1.1
4,325,091	-				+0.4
4,325,091	-				+0.4
4,325,091	-				-0.9
4,325,099	+				-1.6
4,325,099	+				-1.0
4,325,099	+				-0.2
4,325,099	+				-0.1
4,325,100	-				+0.3
4,325,100	-				-1.5
4,325,104	-				+0.1
4,325,104	-				-1.0
4,325,112	+				+0.2
4,325,112	+				+0.1
4,325,112	+				-0.8
4,325,112	+				-0.5
4,325,112	+				-0.0
4,325,112	+				-0.4
4,325,112	+				+1.1
4,325,112	+				-0.9
4,325,112	+				-1.7
4,325,112	+				+0.4
4,325,112	+				-0.5
4,325,112	+				-0.2
4,325,112	+				-0.2
4,325,112	+				+1.1
4,325,112	+				+0.9
4,325,112	+				+0.4
4,325,112	+				+0.3
4,325,112	+				-1.0
4,325,112	+				-0.7
4,325,112	+				+0.3
4,325,112	+				+0.3
4,325,113	-				-1.4
4,325,113	-				+0.2
4,325,113	-				-1.2
4,325,113	-				-0.2
4,325,113	-				+0.6
4,325,113	-				-1.0
4,325,113	-				-0.2
4,325,113	-				-1.5
4,325,113	-				-1.5
4,325,113	-				+0.8
4,325,113	-				+1.5
4,325,113	-				-1.2
4,325,113	-				-0.4
4,325,113	-				-0.1
4,325,113	-				+0.8
4,325,113	-				-2.2
4,325,113	-				-0.4
4,325,113	-				-0.1
4,325,113	-				+1.6
4,325,113	-				+1.1
4,325,113	-				-0.6
4,325,113	-				+0.1
4,325,113	-				+0.5
4,325,113	-				-0.0
4,325,113	-				+0.8
4,325,113	-				-1.1
4,325,117	+				+0.4
4,325,117	+				+0.3
4,325,117	+				-0.9
4,325,117	+				+0.8
4,325,118	-				+0.2
4,325,118	-				-0.7
4,325,118	-				-0.4
4,325,130	-				-1.4
4,325,169	+				-0.5
4,325,198	-				-0.7
4,325,216	+				+1.0
4,325,231	+				-0.4
4,325,254	-				-0.1
4,325,261	+				+1.8
4,325,262	-				+1.8
4,325,262	-				+1.1
4,325,276	+				+0.5
4,325,276	+				-0.2
4,325,283	+				-0.4
4,325,284	-				-1.0
4,325,284	-				-1.2
4,325,302	+				-1.8
4,325,302	+				+0.8
4,325,303	-				-0.3
4,325,303	-				-1.3
4,325,303	-				-0.4
4,325,364	+				-0.8
4,325,365	-				-0.8
4,325,375	-		DZA65_RS19990	0.10	+0.3
4,325,383	+		DZA65_RS19990	0.11	+0.7
4,325,491	+		DZA65_RS19990	0.18	-0.1
4,325,491	+		DZA65_RS19990	0.18	+0.5
4,325,492	-		DZA65_RS19990	0.18	+1.4
4,325,492	-		DZA65_RS19990	0.18	-1.0
4,325,492	-		DZA65_RS19990	0.18	+1.6
4,325,492	-		DZA65_RS19990	0.18	+0.2
4,325,492	-		DZA65_RS19990	0.18	-0.6
4,325,492	-		DZA65_RS19990	0.18	+0.7
4,325,493	+		DZA65_RS19990	0.18	+0.5
4,325,493	+		DZA65_RS19990	0.18	-0.1
4,325,493	+		DZA65_RS19990	0.18	+0.0
4,325,493	+		DZA65_RS19990	0.18	+0.6
4,325,493	+		DZA65_RS19990	0.18	+1.4
4,325,494	-		DZA65_RS19990	0.18	-0.5
4,325,494	-		DZA65_RS19990	0.18	-0.8
4,325,514	+		DZA65_RS19990	0.19	+2.7
4,325,532	+		DZA65_RS19990	0.20	-0.5
4,325,533	-		DZA65_RS19990	0.20	+0.4
4,325,533	-		DZA65_RS19990	0.20	+0.3
4,325,545	-		DZA65_RS19990	0.21	+0.1
4,325,545	-		DZA65_RS19990	0.21	-1.2
4,325,545	-				+0.8
4,325,596	+		DZA65_RS19990	0.24	+0.2
4,325,596	+		DZA65_RS19990	0.24	+0.3
4,325,596	+		DZA65_RS19990	0.24	+0.1
4,325,596	+		DZA65_RS19990	0.24	+0.8
4,325,596	+		DZA65_RS19990	0.24	+0.4
4,325,596	+		DZA65_RS19990	0.24	+0.4
4,325,596	+		DZA65_RS19990	0.24	-2.2
4,325,597	-		DZA65_RS19990	0.24	+0.1
4,325,597	-		DZA65_RS19990	0.24	-2.0
4,325,646	+		DZA65_RS19990	0.27	-0.7
4,325,647	-		DZA65_RS19990	0.27	+0.1
4,325,647	-		DZA65_RS19990	0.27	-0.9
4,325,647	-		DZA65_RS19990	0.27	-2.7
4,325,647	-		DZA65_RS19990	0.27	-0.6
4,325,659	+		DZA65_RS19990	0.28	-1.5
4,325,659	+		DZA65_RS19990	0.28	+0.2
4,325,659	+		DZA65_RS19990	0.28	-2.2
4,325,660	-		DZA65_RS19990	0.28	+0.3
4,325,660	-		DZA65_RS19990	0.28	-3.8
4,325,779	+		DZA65_RS19990	0.36	+0.6
4,325,779	+		DZA65_RS19990	0.36	-1.0
4,325,779	+		DZA65_RS19990	0.36	-0.9
4,325,779	+		DZA65_RS19990	0.36	+0.4
4,325,779	+				+0.4
4,325,780	-		DZA65_RS19990	0.36	+1.1
4,325,780	-		DZA65_RS19990	0.36	+2.5
4,325,793	-		DZA65_RS19990	0.36	+0.6
4,325,793	-		DZA65_RS19990	0.36	-1.3
4,325,860	-		DZA65_RS19990	0.41	-1.0
4,325,896	+		DZA65_RS19990	0.43	+1.4
4,325,896	+		DZA65_RS19990	0.43	-0.5
4,325,896	+		DZA65_RS19990	0.43	+0.7
4,325,896	+		DZA65_RS19990	0.43	-0.5
4,325,896	+		DZA65_RS19990	0.43	+0.2
4,325,896	+		DZA65_RS19990	0.43	+0.6
4,325,897	-		DZA65_RS19990	0.43	-0.2
4,325,897	-		DZA65_RS19990	0.43	+0.1
4,325,897	-		DZA65_RS19990	0.43	-0.7
4,326,247	-		DZA65_RS19990	0.65	+0.4
4,326,274	-		DZA65_RS19990	0.67	-0.4
4,326,303	+		DZA65_RS19990	0.68	-1.8
4,326,324	+		DZA65_RS19990	0.70	+0.5
4,326,324	+		DZA65_RS19990	0.70	-1.5
4,326,366	-		DZA65_RS19990	0.72	-1.5
4,326,426	+		DZA65_RS19990	0.76	+0.0
4,326,427	-		DZA65_RS19990	0.76	-0.2
4,326,427	-		DZA65_RS19990	0.76	+1.0
4,326,537	+		DZA65_RS19990	0.83	-1.3
4,326,538	-		DZA65_RS19990	0.83	+0.1
4,326,538	-		DZA65_RS19990	0.83	-0.2
4,326,561	+		DZA65_RS19990	0.85	-0.9
4,326,569	+		DZA65_RS19990	0.85	-0.7
4,326,569	+		DZA65_RS19990	0.85	-2.2
4,326,570	-		DZA65_RS19990	0.85	+0.8
4,326,588	+		DZA65_RS19990	0.86	+1.1
4,326,633	+		DZA65_RS19990	0.89	+1.6
4,326,633	+		DZA65_RS19990	0.89	-0.3
4,326,913	+				+3.6
4,326,913	+				-0.5
4,326,913	+				-0.0
4,326,914	-				-0.3
4,326,914	-				+1.3
4,326,934	+				-1.5
4,326,934	+				-1.1
4,326,935	-				+0.1
4,326,935	-				-2.9
4,326,935	-				-2.2
4,326,949	+				+0.8
4,326,949	+				+0.5
4,326,952	+				+0.3
4,326,952	+				+0.2
4,326,952	+				-0.9
4,326,952	+				-0.1
4,326,952	+				-0.5
4,326,952	+				+0.8
4,326,952	+				+0.7
4,326,952	+				-2.4
4,326,952	+				+0.9
4,326,952	+				+0.2
4,326,952	+				+0.5
4,326,953	-				-1.2
4,326,953	-				+0.3
4,326,953	-				-2.0
4,326,953	-				-0.4
4,326,953	-				+0.0
4,326,953	-				+0.7
4,326,953	-				+0.5
4,326,969	+				-0.0
4,326,970	-				-0.0
4,327,002	+				+0.3
4,327,003	-				+1.1
4,327,003	-				+0.9
4,327,009	+				-0.2
4,327,009	+				+0.5
4,327,009	+				+1.2
4,327,009	+				-0.2
4,327,009	+				+0.8
4,327,010	-				-0.3
4,327,010	-				-0.4
4,327,010	-				-0.0
4,327,010	-				-0.7
4,327,010	-				-0.9
4,327,025	-				+0.9
4,327,113	-		DZA65_RS19995	0.19	+1.3
4,327,158	-		DZA65_RS19995	0.30	-0.6
4,327,224	+		DZA65_RS19995	0.47	+0.8
4,327,225	-		DZA65_RS19995	0.47	-0.4
4,327,225	-		DZA65_RS19995	0.47	+1.6
4,327,225	-		DZA65_RS19995	0.47	-0.6
4,327,225	-		DZA65_RS19995	0.47	+0.3
4,327,267	+		DZA65_RS19995	0.57	+1.8
4,327,267	+		DZA65_RS19995	0.57	-0.8
4,327,267	+		DZA65_RS19995	0.57	+0.6
4,327,267	+		DZA65_RS19995	0.57	+0.1
4,327,268	-		DZA65_RS19995	0.58	+0.1
4,327,268	-		DZA65_RS19995	0.58	-0.0
4,327,423	+				-0.1
4,327,438	-				+1.3
4,327,438	-				-0.2
4,327,449	+				+0.2
4,327,449	+				+1.8
4,327,450	-				+0.6
4,327,450	-				+1.6
4,327,468	+				+0.5
4,327,468	+				+0.4
4,327,469	-				+1.0
4,327,495	-		DZA65_RS20000	0.10	-0.5
4,327,495	-		DZA65_RS20000	0.10	-2.0
4,327,495	-		DZA65_RS20000	0.10	-1.0
4,327,528	+		DZA65_RS20000	0.17	+1.2
4,327,528	+		DZA65_RS20000	0.17	+1.0
4,327,528	+		DZA65_RS20000	0.17	+1.0
4,327,528	+		DZA65_RS20000	0.17	-0.1
4,327,529	-		DZA65_RS20000	0.17	+0.3
4,327,529	-		DZA65_RS20000	0.17	-0.6
4,327,529	-		DZA65_RS20000	0.17	+1.0
4,327,529	-		DZA65_RS20000	0.17	-0.2
4,327,542	-		DZA65_RS20000	0.20	-0.7
4,327,573	+		DZA65_RS20000	0.27	-0.2
4,327,581	+		DZA65_RS20000	0.28	-1.7
4,327,581	+		DZA65_RS20000	0.28	+0.1
4,327,582	-		DZA65_RS20000	0.28	-1.0
4,327,612	+		DZA65_RS20000	0.35	-0.4
4,327,612	+		DZA65_RS20000	0.35	+0.1
4,327,613	-		DZA65_RS20000	0.35	+0.7
4,327,613	-		DZA65_RS20000	0.35	+0.6
4,327,613	-		DZA65_RS20000	0.35	-0.2
4,327,615	+		DZA65_RS20000	0.35	+0.1
4,327,615	+		DZA65_RS20000	0.35	+0.6
4,327,615	+		DZA65_RS20000	0.35	+0.2
4,327,616	-		DZA65_RS20000	0.36	+1.2
4,327,616	-		DZA65_RS20000	0.36	+0.5
4,327,616	-		DZA65_RS20000	0.36	-1.1
4,327,616	-		DZA65_RS20000	0.36	+0.9
4,327,616	-		DZA65_RS20000	0.36	+1.2
4,327,616	-		DZA65_RS20000	0.36	+0.1
4,327,616	-		DZA65_RS20000	0.36	+2.9
4,327,616	-		DZA65_RS20000	0.36	-1.4
4,327,616	-		DZA65_RS20000	0.36	+0.5
4,327,616	-		DZA65_RS20000	0.36	+1.0
4,327,616	-		DZA65_RS20000	0.36	+1.4
4,327,633	+		DZA65_RS20000	0.39	+1.5
4,327,690	+		DZA65_RS20000	0.51	+2.6
4,327,690	+		DZA65_RS20000	0.51	+0.2
4,327,690	+		DZA65_RS20000	0.51	-0.9
4,327,691	-		DZA65_RS20000	0.52	-2.8
4,327,717	+		DZA65_RS20000	0.57	+3.0
4,327,717	+		DZA65_RS20000	0.57	-0.5
4,327,718	-		DZA65_RS20000	0.57	+1.1
4,327,718	-		DZA65_RS20000	0.57	+0.8
4,327,718	-		DZA65_RS20000	0.57	+1.4
4,327,734	+		DZA65_RS20000	0.61	+1.5
4,327,734	+		DZA65_RS20000	0.61	-0.4
4,327,734	+		DZA65_RS20000	0.61	+0.4
4,327,735	-		DZA65_RS20000	0.61	+0.5
4,327,735	-		DZA65_RS20000	0.61	-2.2
4,327,735	-		DZA65_RS20000	0.61	+0.1
4,327,754	-		DZA65_RS20000	0.65	+0.0
4,327,754	-		DZA65_RS20000	0.65	+0.8
4,327,795	+		DZA65_RS20000	0.74	-0.2
4,327,795	+		DZA65_RS20000	0.74	-1.8
4,327,795	+		DZA65_RS20000	0.74	+0.1
4,327,795	+		DZA65_RS20000	0.74	-0.2
4,327,796	-		DZA65_RS20000	0.74	+0.0
4,327,796	-		DZA65_RS20000	0.74	+1.7
4,327,796	-		DZA65_RS20000	0.74	+0.5
4,327,796	-		DZA65_RS20000	0.74	+0.8
4,327,796	-		DZA65_RS20000	0.74	-0.5
4,327,796	-		DZA65_RS20000	0.74	+1.1
4,327,797	+		DZA65_RS20000	0.74	-0.1
4,327,797	+		DZA65_RS20000	0.74	+0.5
4,327,798	-		DZA65_RS20000	0.74	-0.6