Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19350

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,184,673	+				-0.2
4,184,673	+				-0.4
4,184,674	-				-1.4
4,184,716	+				-1.7
4,184,716	+				-1.8
4,184,717	-				-0.3
4,184,733	+		DZA65_RS19345	0.11	-0.7
4,184,733	+		DZA65_RS19345	0.11	+1.2
4,184,733	+		DZA65_RS19345	0.11	-0.4
4,184,733	+		DZA65_RS19345	0.11	-0.8
4,184,733	+		DZA65_RS19345	0.11	-0.3
4,184,733	+		DZA65_RS19345	0.11	+0.3
4,184,733	+		DZA65_RS19345	0.11	-0.0
4,184,733	+		DZA65_RS19345	0.11	+1.2
4,184,733	+		DZA65_RS19345	0.11	-0.8
4,184,733	+		DZA65_RS19345	0.11	+1.5
4,184,733	+		DZA65_RS19345	0.11	-1.3
4,184,733	+		DZA65_RS19345	0.11	+0.4
4,184,733	+		DZA65_RS19345	0.11	+1.1
4,184,733	+		DZA65_RS19345	0.11	-0.6
4,184,733	+		DZA65_RS19345	0.11	-0.3
4,184,733	+		DZA65_RS19345	0.11	-0.1
4,184,733	+		DZA65_RS19345	0.11	+1.2
4,184,733	+		DZA65_RS19345	0.11	+1.1
4,184,734	-		DZA65_RS19345	0.11	-0.8
4,184,734	-		DZA65_RS19345	0.11	-1.3
4,184,734	-		DZA65_RS19345	0.11	-0.8
4,184,734	-		DZA65_RS19345	0.11	-0.6
4,184,734	-		DZA65_RS19345	0.11	-0.4
4,184,734	-		DZA65_RS19345	0.11	-1.7
4,184,734	-		DZA65_RS19345	0.11	+0.3
4,184,734	-		DZA65_RS19345	0.11	-0.1
4,184,734	-		DZA65_RS19345	0.11	-3.3
4,184,734	-		DZA65_RS19345	0.11	-0.3
4,184,734	-		DZA65_RS19345	0.11	-0.3
4,184,734	-		DZA65_RS19345	0.11	-0.3
4,184,737	+		DZA65_RS19345	0.12	-1.6
4,184,737	+		DZA65_RS19345	0.12	-1.3
4,184,737	+		DZA65_RS19345	0.12	+0.7
4,184,737	+		DZA65_RS19345	0.12	+0.1
4,184,737	+		DZA65_RS19345	0.12	+0.3
4,184,737	+		DZA65_RS19345	0.12	-0.4
4,184,737	+		DZA65_RS19345	0.12	+0.7
4,184,737	+		DZA65_RS19345	0.12	-0.0
4,184,737	+		DZA65_RS19345	0.12	+0.0
4,184,738	-		DZA65_RS19345	0.12	-0.0
4,184,738	-		DZA65_RS19345	0.12	+0.3
4,184,738	-		DZA65_RS19345	0.12	+1.9
4,184,738	-		DZA65_RS19345	0.12	+1.5
4,184,738	-		DZA65_RS19345	0.12	+0.3
4,184,738	-		DZA65_RS19345	0.12	-0.6
4,184,781	+		DZA65_RS19345	0.24	-0.8
4,184,781	+		DZA65_RS19345	0.24	-0.8
4,184,781	+		DZA65_RS19345	0.24	+0.1
4,184,781	+		DZA65_RS19345	0.24	+0.5
4,184,781	+		DZA65_RS19345	0.24	+0.3
4,184,781	+		DZA65_RS19345	0.24	+0.3
4,184,781	+		DZA65_RS19345	0.24	+0.0
4,184,781	+		DZA65_RS19345	0.24	+0.3
4,184,782	-		DZA65_RS19345	0.24	-1.0
4,184,782	-		DZA65_RS19345	0.24	+0.7
4,184,782	-		DZA65_RS19345	0.24	+0.1
4,184,782	-		DZA65_RS19345	0.24	-0.4
4,184,782	-		DZA65_RS19345	0.24	-0.8
4,184,783	+		DZA65_RS19345	0.24	-0.8
4,184,784	-		DZA65_RS19345	0.25	+2.3
4,184,784	-		DZA65_RS19345	0.25	+0.7
4,184,784	-		DZA65_RS19345	0.25	-0.9
4,184,784	-		DZA65_RS19345	0.25	-0.6
4,184,784	-		DZA65_RS19345	0.25	-0.7
4,184,842	+		DZA65_RS19345	0.40	-1.7
4,184,843	-		DZA65_RS19345	0.40	+1.0
4,184,843	-		DZA65_RS19345	0.40	-0.3
4,184,843	-		DZA65_RS19345	0.40	-0.5
4,184,846	+		DZA65_RS19345	0.41	-1.8
4,184,846	+		DZA65_RS19345	0.41	-0.7
4,184,846	+		DZA65_RS19345	0.41	+0.1
4,184,846	+		DZA65_RS19345	0.41	-0.7
4,184,846	+		DZA65_RS19345	0.41	-0.8
4,184,846	+		DZA65_RS19345	0.41	+0.7
4,184,847	-		DZA65_RS19345	0.41	+0.4
4,184,847	-		DZA65_RS19345	0.41	-0.3
4,184,847	-		DZA65_RS19345	0.41	-0.8
4,184,934	+		DZA65_RS19345	0.64	+1.9
4,184,935	-		DZA65_RS19345	0.65	-0.3
4,184,935	-		DZA65_RS19345	0.65	-2.6
4,184,935	-		DZA65_RS19345	0.65	-2.6
4,184,935	-		DZA65_RS19345	0.65	-0.7
4,185,061	+				-0.5
4,185,061	+				+1.5
4,185,061	+				+0.5
4,185,061	+				+0.5
4,185,061	+				+0.2
4,185,062	-				-0.3
4,185,062	-				+1.2
4,185,062	-				-0.3
4,185,062	-				+0.2
4,185,075	-				-0.7
4,185,080	+				-1.2
4,185,080	+				-0.4
4,185,080	+				-1.3
4,185,084	+				-2.6
4,185,084	+				+1.0
4,185,084	+				-3.0
4,185,084	+				-0.4
4,185,084	+				-0.8
4,185,084	+				-0.6
4,185,084	+				+0.3
4,185,084	+				+0.2
4,185,085	-				-0.8
4,185,085	-				-0.8
4,185,085	-				+0.4
4,185,225	+		DZA65_RS19350	0.18	-1.3
4,185,225	+		DZA65_RS19350	0.18	+0.7
4,185,226	-		DZA65_RS19350	0.18	-0.3
4,185,226	-		DZA65_RS19350	0.18	+0.7
4,185,226	-		DZA65_RS19350	0.18	+1.2
4,185,226	-		DZA65_RS19350	0.18	-2.1
4,185,295	-		DZA65_RS19350	0.26	-0.7
4,185,513	-		DZA65_RS19350	0.52	-2.8
4,185,540	+		DZA65_RS19350	0.55	-1.6
4,185,540	+		DZA65_RS19350	0.55	-2.0
4,185,611	-				+0.7
4,185,611	-				-0.3
4,185,628	-		DZA65_RS19350	0.66	-0.0
4,185,774	-		DZA65_RS19350	0.83	-1.4
4,185,796	-		DZA65_RS19350	0.86	-3.0
4,185,796	-		DZA65_RS19350	0.86	-0.6
4,185,861	+				+0.2
4,185,861	+				+1.2
4,185,861	+				-1.1
4,185,861	+				+0.6
4,185,862	-				-0.5
4,185,862	-				-0.3
4,185,975	+				-0.2
4,185,976	-				-0.8
4,185,976	-				+0.3
4,185,983	+				+1.0
4,185,983	+				-0.5
4,185,984	-				+0.4
4,186,017	+				-0.2
4,186,017	+				+0.2
4,186,018	-				+1.3
4,186,020	+				-0.7
4,186,021	-				+0.9
4,186,021	-				+0.2
4,186,027	+				-0.6
4,186,028	-				+0.5
4,186,093	+				-1.6
4,186,093	+				+1.5
4,186,094	-				-0.3
4,186,094	-				+0.4
4,186,094	-				-0.2
4,186,094	-				-1.1
4,186,188	+				+0.6
4,186,188	+				+0.5
4,186,189	-				+1.3
4,186,189	-				-0.8
4,186,189	-				-0.6
4,186,189	-				+0.9
4,186,198	+				-0.6
4,186,199	-				+0.4
4,186,199	-				-0.0
4,186,219	-		DZA65_RS19355	0.11	-0.7
4,186,228	-		DZA65_RS19355	0.12	+1.1
4,186,228	-		DZA65_RS19355	0.12	-0.6
4,186,232	-		DZA65_RS19355	0.12	-0.5
4,186,254	+		DZA65_RS19355	0.14	+0.7
4,186,308	+		DZA65_RS19355	0.19	+0.4
4,186,353	+		DZA65_RS19355	0.24	-0.4
4,186,356	-		DZA65_RS19355	0.24	+0.7
4,186,381	+		DZA65_RS19355	0.26	-0.8
4,186,381	+		DZA65_RS19355	0.26	+0.3
4,186,383	+		DZA65_RS19355	0.26	+0.5
4,186,383	+		DZA65_RS19355	0.26	+0.4
4,186,383	+		DZA65_RS19355	0.26	-0.1
4,186,469	-		DZA65_RS19355	0.35	+0.5
4,186,498	+		DZA65_RS19355	0.37	+0.6
4,186,498	+		DZA65_RS19355	0.37	+0.7
4,186,513	+		DZA65_RS19355	0.39	-0.5
4,186,588	-		DZA65_RS19355	0.46	-0.7
4,186,600	-		DZA65_RS19355	0.47	-1.8
4,186,629	+		DZA65_RS19355	0.49	-0.2
4,186,630	-		DZA65_RS19355	0.50	+0.1
4,186,674	-		DZA65_RS19355	0.54	-0.5
4,186,674	-		DZA65_RS19355	0.54	+0.5
4,186,677	-		DZA65_RS19355	0.54	+2.7
4,186,677	-		DZA65_RS19355	0.54	-1.1
4,186,772	+		DZA65_RS19355	0.63	+1.2
4,186,773	-		DZA65_RS19355	0.63	+0.9
4,186,773	-		DZA65_RS19355	0.63	-0.0
4,186,773	-		DZA65_RS19355	0.63	+0.7
4,186,773	-		DZA65_RS19355	0.63	-0.3
4,186,773	-		DZA65_RS19355	0.63	-1.5
4,186,780	+		DZA65_RS19355	0.64	+1.3
4,186,847	+		DZA65_RS19355	0.70	-0.5
4,186,865	+		DZA65_RS19355	0.71	+0.3
4,186,865	+		DZA65_RS19355	0.71	-1.3
4,186,866	-		DZA65_RS19355	0.72	-0.6
4,186,872	+		DZA65_RS19355	0.72	+1.0
4,186,872	+		DZA65_RS19355	0.72	+1.1
4,186,872	+		DZA65_RS19355	0.72	-0.9
4,186,873	-		DZA65_RS19355	0.72	+1.0
4,186,873	-		DZA65_RS19355	0.72	-0.6
4,186,873	-		DZA65_RS19355	0.72	-0.6
4,186,873	-		DZA65_RS19355	0.72	-0.6
4,186,873	-		DZA65_RS19355	0.72	+0.1
4,186,904	+		DZA65_RS19355	0.75	+0.2
4,186,905	-		DZA65_RS19355	0.75	+1.0