Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19210

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,153,436	-		DZA65_RS19205	0.12	-1.0
4,153,470	+		DZA65_RS19205	0.15	-0.8
4,153,648	+		DZA65_RS19205	0.31	-2.4
4,153,649	-		DZA65_RS19205	0.31	-1.7
4,153,649	-		DZA65_RS19205	0.31	-1.4
4,153,649	-		DZA65_RS19205	0.31	-2.5
4,153,741	+		DZA65_RS19205	0.40	-1.8
4,153,741	+		DZA65_RS19205	0.40	-2.5
4,153,742	-		DZA65_RS19205	0.40	-1.6
4,153,742	-				-0.8
4,153,780	+		DZA65_RS19205	0.43	-1.9
4,153,780	+		DZA65_RS19205	0.43	-2.3
4,153,780	+		DZA65_RS19205	0.43	-2.7
4,153,780	+		DZA65_RS19205	0.43	-0.6
4,153,780	+		DZA65_RS19205	0.43	-1.8
4,153,781	-		DZA65_RS19205	0.43	-2.4
4,153,781	-		DZA65_RS19205	0.43	-0.7
4,153,781	-		DZA65_RS19205	0.43	-0.3
4,153,781	-		DZA65_RS19205	0.43	+0.2
4,153,781	-		DZA65_RS19205	0.43	-3.6
4,153,781	-		DZA65_RS19205	0.43	-1.6
4,153,781	-		DZA65_RS19205	0.43	-3.4
4,153,781	-		DZA65_RS19205	0.43	-3.2
4,153,807	+		DZA65_RS19205	0.46	-2.4
4,153,807	+		DZA65_RS19205	0.46	-2.1
4,153,807	+		DZA65_RS19205	0.46	-1.4
4,153,807	+		DZA65_RS19205	0.46	-1.0
4,153,807	+		DZA65_RS19205	0.46	-2.0
4,153,808	-		DZA65_RS19205	0.46	-2.9
4,153,808	-		DZA65_RS19205	0.46	-0.3
4,153,808	-		DZA65_RS19205	0.46	-2.8
4,153,808	-		DZA65_RS19205	0.46	-2.8
4,153,830	+		DZA65_RS19205	0.48	-0.8
4,153,830	+		DZA65_RS19205	0.48	-1.6
4,153,830	+		DZA65_RS19205	0.48	-3.4
4,153,831	-		DZA65_RS19205	0.48	-1.5
4,153,831	-		DZA65_RS19205	0.48	-2.3
4,153,964	+		DZA65_RS19205	0.60	-2.3
4,153,964	+		DZA65_RS19205	0.60	-2.6
4,153,964	+		DZA65_RS19205	0.60	-3.1
4,153,964	+		DZA65_RS19205	0.60	-0.7
4,153,964	+		DZA65_RS19205	0.60	-1.8
4,153,964	+		DZA65_RS19205	0.60	-2.3
4,153,964	+		DZA65_RS19205	0.60	-1.8
4,153,964	+		DZA65_RS19205	0.60	-3.2
4,153,964	+		DZA65_RS19205	0.60	-2.7
4,153,964	+		DZA65_RS19205	0.60	+0.2
4,153,964	+		DZA65_RS19205	0.60	-2.1
4,153,964	+		DZA65_RS19205	0.60	-0.6
4,153,965	-		DZA65_RS19205	0.60	-2.6
4,153,965	-		DZA65_RS19205	0.60	-2.4
4,153,965	-		DZA65_RS19205	0.60	+0.2
4,153,965	-		DZA65_RS19205	0.60	-2.2
4,153,965	-		DZA65_RS19205	0.60	+0.5
4,153,965	-		DZA65_RS19205	0.60	-0.3
4,153,965	-		DZA65_RS19205	0.60	-0.3
4,153,965	-		DZA65_RS19205	0.60	-2.7
4,153,981	+		DZA65_RS19205	0.62	-2.1
4,153,981	+		DZA65_RS19205	0.62	-0.1
4,153,981	+		DZA65_RS19205	0.62	-2.4
4,153,981	+		DZA65_RS19205	0.62	-0.6
4,153,981	+		DZA65_RS19205	0.62	-2.1
4,153,981	+		DZA65_RS19205	0.62	-2.7
4,153,981	+		DZA65_RS19205	0.62	-2.9
4,153,981	+		DZA65_RS19205	0.62	-1.3
4,153,981	+		DZA65_RS19205	0.62	-1.8
4,153,981	+		DZA65_RS19205	0.62	-1.8
4,153,982	-		DZA65_RS19205	0.62	-1.3
4,153,982	-		DZA65_RS19205	0.62	-2.4
4,153,982	-		DZA65_RS19205	0.62	-0.7
4,153,982	-		DZA65_RS19205	0.62	-2.3
4,153,982	-		DZA65_RS19205	0.62	-1.3
4,153,982	-		DZA65_RS19205	0.62	-2.1
4,153,982	-		DZA65_RS19205	0.62	-2.8
4,153,982	-		DZA65_RS19205	0.62	-2.7
4,153,982	-		DZA65_RS19205	0.62	-1.3
4,153,982	-		DZA65_RS19205	0.62	-2.3
4,153,982	-				-1.6
4,153,982	-		DZA65_RS19205	0.62	-2.0
4,153,982	-		DZA65_RS19205	0.62	-2.7
4,153,982	-		DZA65_RS19205	0.62	-3.3
4,153,982	-		DZA65_RS19205	0.62	-1.6
4,153,982	-		DZA65_RS19205	0.62	-1.8
4,153,982	-		DZA65_RS19205	0.62	-1.3
4,154,146	+		DZA65_RS19205	0.77	-3.0
4,154,146	+		DZA65_RS19205	0.77	-3.8
4,154,146	+		DZA65_RS19205	0.77	-1.9
4,154,147	-		DZA65_RS19205	0.77	+1.3
4,154,385	-				-1.5
4,154,385	-				-1.3
4,154,398	+				-1.5
4,154,398	+				-1.8
4,154,398	+				-1.3
4,154,398	+				-1.8
4,154,408	+				-1.6
4,154,416	+				+0.2
4,154,416	+				-2.3
4,154,416	+				-2.5
4,154,416	+				-3.4
4,154,416	+				-2.1
4,154,416	+				-0.8
4,154,416	+				+0.3
4,154,416	+				-0.5
4,154,416	+				-0.8
4,154,416	+				-2.3
4,154,416	+				-1.8
4,154,416	+				-3.0
4,154,417	-				-0.3
4,154,417	-				-0.1
4,154,417	-				-2.1
4,154,417	-				-2.1
4,154,417	-				-0.3
4,154,417	-				-1.1
4,154,417	-				+0.7
4,154,417	-				+0.7
4,154,417	-				-4.8
4,154,417	-				-3.4
4,154,417	-				-2.1
4,154,417	-				+0.3
4,154,417	-				-1.6
4,154,417	-				-1.0
4,154,417	-				-1.6
4,154,417	-				+0.2
4,154,417	-				-2.6
4,154,417	-				-1.6
4,154,417	-				+0.4
4,154,417	-				+0.9
4,154,417	-				-1.4
4,154,418	+				-2.2
4,154,418	+				-1.3
4,154,419	-				-0.6
4,154,419	-				-2.6
4,154,419	-				-0.8
4,154,446	+				+0.7
4,154,446	+				-1.8
4,154,478	+				-3.1
4,154,478	+				-3.0
4,154,478	+				-2.3
4,154,478	+				-2.2
4,154,478	+				+0.4
4,154,478	+				-1.3
4,154,478	+				-1.3
4,154,478	+				-1.6
4,154,478	+				-0.3
4,154,478	+				-2.0
4,154,478	+				-0.8
4,154,478	+				-1.8
4,154,479	-				-2.3
4,154,479	-				-0.8
4,154,479	-				-3.6
4,154,479	-				-4.4
4,154,479	-				-0.9
4,154,480	+				-2.2
4,154,481	-				-1.9
4,154,540	+				-3.5
4,154,686	+		DZA65_RS19210	0.20	-2.3
4,154,686	+		DZA65_RS19210	0.20	-1.4
4,154,694	+		DZA65_RS19210	0.21	+0.1
4,154,694	+		DZA65_RS19210	0.21	-2.1
4,154,694	+		DZA65_RS19210	0.21	-2.8
4,154,694	+		DZA65_RS19210	0.21	-2.8
4,154,694	+		DZA65_RS19210	0.21	-1.6
4,154,694	+		DZA65_RS19210	0.21	-5.9
4,154,694	+		DZA65_RS19210	0.21	-0.8
4,154,695	-		DZA65_RS19210	0.21	-0.8
4,154,695	-		DZA65_RS19210	0.21	-1.7
4,154,695	-		DZA65_RS19210	0.21	+0.9
4,154,695	-		DZA65_RS19210	0.21	-1.8
4,154,725	+				-0.3
4,154,725	+		DZA65_RS19210	0.23	-1.3
4,154,725	+		DZA65_RS19210	0.23	-2.8
4,154,725	+		DZA65_RS19210	0.23	-1.8
4,154,726	-		DZA65_RS19210	0.23	-2.3
4,154,726	-		DZA65_RS19210	0.23	+0.2
4,154,726	-		DZA65_RS19210	0.23	-1.0
4,154,726	-		DZA65_RS19210	0.23	-0.4
4,154,726	-		DZA65_RS19210	0.23	-1.4
4,154,726	-		DZA65_RS19210	0.23	-2.0
4,155,065	+				+0.7
4,155,065	+		DZA65_RS19210	0.47	-0.3
4,155,065	+		DZA65_RS19210	0.47	+0.2
4,155,065	+		DZA65_RS19210	0.47	-2.6
4,155,184	-		DZA65_RS19210	0.56	-1.7
4,155,219	+		DZA65_RS19210	0.58	-1.3
4,155,219	+		DZA65_RS19210	0.58	-2.4
4,155,219	+		DZA65_RS19210	0.58	-2.7
4,155,229	+		DZA65_RS19210	0.59	-2.3
4,155,229	+		DZA65_RS19210	0.59	-1.3
4,155,375	+		DZA65_RS19210	0.69	-0.8
4,155,375	+		DZA65_RS19210	0.69	-0.8
4,155,375	+		DZA65_RS19210	0.69	-2.3
4,155,375	+		DZA65_RS19210	0.69	-0.8
4,155,375	+		DZA65_RS19210	0.69	-2.4
4,155,375	+		DZA65_RS19210	0.69	-2.7
4,155,375	+		DZA65_RS19210	0.69	-1.2
4,155,375	+		DZA65_RS19210	0.69	-0.3
4,155,375	+		DZA65_RS19210	0.69	-0.6
4,155,375	+		DZA65_RS19210	0.69	-0.6
4,155,375	+		DZA65_RS19210	0.69	-1.6
4,155,375	+		DZA65_RS19210	0.69	-0.8
4,155,376	-		DZA65_RS19210	0.69	-1.1
4,155,376	-		DZA65_RS19210	0.69	-1.8
4,155,376	-		DZA65_RS19210	0.69	-1.6
4,155,376	-		DZA65_RS19210	0.69	-0.3
4,155,376	-		DZA65_RS19210	0.69	-0.3
4,155,376	-		DZA65_RS19210	0.69	-0.8
4,155,376	-		DZA65_RS19210	0.69	-1.6
4,155,376	-		DZA65_RS19210	0.69	-2.7
4,155,376	-		DZA65_RS19210	0.69	-1.8
4,155,376	-		DZA65_RS19210	0.69	-2.4
4,155,376	-		DZA65_RS19210	0.69	-1.6
4,155,376	-		DZA65_RS19210	0.69	-2.2
4,155,376	-		DZA65_RS19210	0.69	-2.6
4,155,376	-		DZA65_RS19210	0.69	-1.6
4,155,376	-		DZA65_RS19210	0.69	-2.5
4,155,376	-		DZA65_RS19210	0.69	-1.8
4,155,376	-		DZA65_RS19210	0.69	-2.8
4,155,376	-		DZA65_RS19210	0.69	-1.5
4,155,377	+		DZA65_RS19210	0.70	-2.3
4,155,377	+		DZA65_RS19210	0.70	-1.5
4,155,377	+		DZA65_RS19210	0.70	-3.7
4,155,377	+		DZA65_RS19210	0.70	-1.6
4,155,378	-		DZA65_RS19210	0.70	+0.7
4,155,378	-		DZA65_RS19210	0.70	-0.8
4,155,497	+		DZA65_RS19210	0.78	-1.8
4,155,746	+				-2.1
4,155,764	+				-1.3
4,155,764	+				-2.1
4,155,765	-				-3.0
4,155,801	+				+0.9
4,155,801	+				+0.4
4,155,801	+				+0.3
4,155,801	+				+1.3
4,155,801	+				+0.6
4,155,801	+				+0.7
4,155,802	-				-2.4
4,155,802	-				-3.2
4,155,802	-				-0.1
4,155,802	-				-2.7
4,155,821	+				-2.1
4,155,822	-				-1.8
4,156,015	-		DZA65_RS19215	0.33	-2.8
4,156,029	-		DZA65_RS19215	0.35	-1.3
4,156,029	-		DZA65_RS19215	0.35	-0.8
4,156,272	-		DZA65_RS19215	0.76	-1.6
4,156,290	+				-1.8
4,156,290	+		DZA65_RS19215	0.79	-2.7
4,156,291	-		DZA65_RS19215	0.79	-1.3
4,156,291	-		DZA65_RS19215	0.79	-2.3
4,156,291	-		DZA65_RS19215	0.79	-1.4
4,156,291	-		DZA65_RS19215	0.79	-2.6
4,156,304	-		DZA65_RS19215	0.81	-0.8
4,156,304	-		DZA65_RS19215	0.81	-2.7
4,156,304	-		DZA65_RS19215	0.81	-1.7
4,156,417	-				-0.7
4,156,417	-				+0.2
4,156,417	-				-2.1
4,156,435	+				-1.8
4,156,435	+				-0.3
4,156,436	-				-1.4
4,156,436	-				-1.0
4,156,488	+				+0.6
4,156,488	+				-2.4
4,156,488	+				-2.8
4,156,488	+				-0.3
4,156,488	+				+0.3
4,156,488	+				-0.1
4,156,488	+				-1.3
4,156,488	+				-0.7
4,156,488	+				+0.4
4,156,488	+				+0.6
4,156,488	+				-2.7
4,156,488	+				+0.2
4,156,488	+				-1.5
4,156,489	-				+0.7
4,156,489	-				-1.5
4,156,489	-				-2.1
4,156,489	-				+0.4
4,156,489	-				-0.1
4,156,489	-				-0.3
4,156,489	-				-1.3
4,156,489	-				-1.0
4,156,489	-				+1.1
4,156,489	-				-2.1
4,156,489	-				-0.1
4,156,489	-				+1.2
4,156,489	-				-0.5
4,156,489	-				+1.3
4,156,489	-				+0.7
4,156,489	-				+0.3
4,156,489	-				-0.0
4,156,489	-				-1.2
4,156,742	+				+0.4
4,156,742	+				-0.3
4,156,742	+				+0.3
4,156,742	+				+0.3
4,156,743	-				-1.6
4,156,743	-				+0.5
4,156,743	-				-0.1
4,156,744	+				+0.0
4,156,744	+				-1.4
4,156,744	+				-0.5
4,156,744	+				-0.1
4,156,744	+				-0.1
4,156,744	+				+0.4
4,156,744	+				-1.1
4,156,744	+				+0.3
4,156,745	-				-0.2
4,156,745	-				+1.1
4,156,745	-				+1.2
4,156,745	-				+1.4
4,156,745	-				+0.7
4,156,774	+				-0.3
4,156,775	-				+0.2
4,156,775	-				+0.6