Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18650

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,017,321	+				-0.9
4,017,321	+				-0.6
4,017,321	+				-1.4
4,017,321	+				-0.5
4,017,321	+				-0.6
4,017,321	+				-1.1
4,017,321	+				-1.6
4,017,322	-				+0.6
4,017,322	-				-0.7
4,017,322	-				-0.5
4,017,322	-				+0.3
4,017,322	-				-0.3
4,017,322	-				+0.2
4,017,322	-				-2.3
4,017,322	-				-0.0
4,017,322	-				-0.2
4,017,322	-				+0.4
4,017,322	-				-2.1
4,017,322	-				-0.9
4,017,322	-				-1.8
4,017,322	-				-0.0
4,017,336	+				+0.1
4,017,336	+				+1.0
4,017,337	-				-0.7
4,017,337	-				+0.7
4,017,337	-				-0.1
4,017,348	+				+1.2
4,017,348	+				-1.9
4,017,349	-				+3.0
4,017,365	+				+0.8
4,017,365	+				+0.1
4,017,366	-				-0.1
4,017,382	+				+0.4
4,017,382	+				-0.3
4,017,382	+				-0.6
4,017,383	-				+0.2
4,017,395	+				-1.0
4,017,395	+				+0.4
4,017,395	+				+1.8
4,017,396	-				-0.1
4,017,399	+				+0.4
4,017,399	+				-1.3
4,017,399	+				+0.7
4,017,399	+				-2.3
4,017,399	+				-2.1
4,017,399	+				-0.3
4,017,399	+				+0.6
4,017,399	+				-1.6
4,017,399	+				+0.4
4,017,399	+				-0.9
4,017,399	+				-1.9
4,017,400	-				+1.0
4,017,400	-				+0.4
4,017,400	-				+1.1
4,017,400	-				+0.9
4,017,400	-				-0.9
4,017,400	-				-0.8
4,017,416	+				-1.0
4,017,416	+				+0.6
4,017,416	+				+0.7
4,017,416	+				-0.0
4,017,416	+				+0.4
4,017,417	-				+0.1
4,017,420	+				+0.4
4,017,420	+				+0.4
4,017,420	+				+0.4
4,017,420	+				+0.5
4,017,420	+				+0.4
4,017,421	-				+0.1
4,017,421	-				-0.3
4,017,421	-				+1.1
4,017,421	-				+0.7
4,017,421	-				-1.0
4,017,421	-				+1.3
4,017,429	+				+1.5
4,017,497	+				-1.3
4,017,497	+				-1.2
4,017,498	-				-2.6
4,017,535	+				-1.4
4,017,535	+				-3.0
4,017,536	-				-1.6
4,017,536	-				+0.4
4,017,736	+		DZA65_RS18650	0.27	-1.5
4,017,737	-		DZA65_RS18650	0.27	-1.9
4,017,737	-		DZA65_RS18650	0.27	-0.9
4,018,010	+		DZA65_RS18650	0.53	-2.6
4,018,010	+		DZA65_RS18650	0.53	-1.8
4,018,010	+		DZA65_RS18650	0.53	-3.3
4,018,011	-		DZA65_RS18650	0.53	-1.9
4,018,011	-		DZA65_RS18650	0.53	+0.1
4,018,074	-		DZA65_RS18650	0.59	-1.3
4,018,074	-		DZA65_RS18650	0.59	-1.5
4,018,083	+		DZA65_RS18650	0.60	-0.4
4,018,385	+		DZA65_RS18650	0.88	-2.5
4,018,386	-		DZA65_RS18650	0.88	-2.1
4,018,446	+				-1.9
4,018,464	+				-0.9
4,018,464	+				-1.6
4,018,465	-				-2.0
4,018,465	-				-2.3
4,018,507	-				-1.8
4,018,507	-				-1.1
4,018,507	-				+0.6
4,018,507	-				-1.9
4,018,545	+				-0.3
4,018,546	-				-0.6
4,018,546	-				-1.1
4,018,546	-				+1.1
4,018,546	-				+0.5
4,018,546	-				-0.0
4,018,546	-				-0.3
4,018,546	-				+0.5
4,018,559	+				-1.3
4,018,559	+				-2.1
4,018,559	+				+0.9
4,018,559	+				+0.1
4,018,581	+				-0.3
4,018,581	+				-1.6
4,018,582	-				-0.4
4,018,582	-				+1.3
4,018,582	-				+0.7
4,018,597	+				-0.3
4,018,597	+				+0.2
4,018,597	+				+1.6
4,018,598	-				+0.1
4,018,599	+				+0.7
4,018,599	+				+2.3
4,018,599	+				+0.2
4,018,599	+				+1.5
4,018,599	+				+0.0
4,018,599	+				-0.3
4,018,599	+				-0.4
4,018,599	+				+1.4
4,018,600	-				-0.0
4,018,600	-				+0.3
4,018,600	-				-1.1
4,018,600	-				+0.1
4,018,686	+				+0.0
4,018,686	+				+0.8
4,018,687	-				+0.3
4,018,687	-				-1.0
4,018,693	+				-0.5
4,018,694	-				+1.4
4,018,701	+				+0.7
4,018,701	+				+1.2
4,018,701	+				-0.3
4,018,701	+				-1.0
4,018,702	-				-0.6
4,018,702	-				+0.0
4,018,702	-				-0.5
4,018,702	-				-0.7
4,018,703	+				-1.3
4,018,703	+				-0.2
4,018,703	+				-0.3
4,018,703	+				-0.6
4,018,703	+				+0.7
4,018,703	+				+0.7
4,018,703	+				+0.9
4,018,703	+				-0.9
4,018,704	-				-0.0
4,018,704	-				+1.0
4,018,704	-				+0.4
4,018,704	-				+0.4
4,018,704	-				+0.7
4,018,704	-				-0.1
4,018,704	-				-0.8
4,018,704	-				+0.7
4,018,704	-				-0.8
4,018,819	-		DZA65_RS18655	0.49	+0.2
4,018,859	-		DZA65_RS18655	0.65	-0.2
4,018,876	-		DZA65_RS18655	0.72	+1.0
4,018,947	+				-0.2
4,018,948	-				+1.0
4,018,948	-				-0.1
4,019,038	-				-0.6
4,019,144	+				+0.6
4,019,148	+				-0.2
4,019,149	-				-0.9
4,019,154	+				-0.9
4,019,154	+				-1.4
4,019,155	-				+1.3
4,019,168	+				+0.0
4,019,168	+				+0.7
4,019,168	+				+0.3
4,019,228	+				+0.7
4,019,270	+		DZA65_RS18660	0.11	-0.7
4,019,270	+		DZA65_RS18660	0.11	+0.7
4,019,270	+		DZA65_RS18660	0.11	-0.1
4,019,270	+		DZA65_RS18660	0.11	+0.7
4,019,270	+		DZA65_RS18660	0.11	+0.0
4,019,270	+		DZA65_RS18660	0.11	+1.3
4,019,270	+		DZA65_RS18660	0.11	-1.0
4,019,270	+		DZA65_RS18660	0.11	+0.6
4,019,270	+		DZA65_RS18660	0.11	-0.9
4,019,270	+		DZA65_RS18660	0.11	+0.7
4,019,270	+		DZA65_RS18660	0.11	-0.9
4,019,270	+		DZA65_RS18660	0.11	-0.2
4,019,270	+		DZA65_RS18660	0.11	-1.9
4,019,270	+		DZA65_RS18660	0.11	+0.3
4,019,270	+		DZA65_RS18660	0.11	+0.7
4,019,270	+		DZA65_RS18660	0.11	+1.3
4,019,271	-		DZA65_RS18660	0.11	+0.2
4,019,271	-		DZA65_RS18660	0.11	-0.6
4,019,271	-		DZA65_RS18660	0.11	+1.3
4,019,271	-		DZA65_RS18660	0.11	+1.1
4,019,271	-		DZA65_RS18660	0.11	-1.0
4,019,271	-		DZA65_RS18660	0.11	+0.1
4,019,271	-		DZA65_RS18660	0.11	+0.9
4,019,271	-		DZA65_RS18660	0.11	+1.7
4,019,271	-		DZA65_RS18660	0.11	-0.6
4,019,271	-		DZA65_RS18660	0.11	-0.5
4,019,271	-		DZA65_RS18660	0.11	-0.7
4,019,271	-		DZA65_RS18660	0.11	-0.3
4,019,271	-		DZA65_RS18660	0.11	-0.6
4,019,271	-		DZA65_RS18660	0.11	+1.0
4,019,271	-		DZA65_RS18660	0.11	+1.2
4,019,272	+		DZA65_RS18660	0.11	+1.4
4,019,272	+		DZA65_RS18660	0.11	+0.1
4,019,272	+		DZA65_RS18660	0.11	-0.4
4,019,272	+		DZA65_RS18660	0.11	+1.2
4,019,272	+		DZA65_RS18660	0.11	+0.7
4,019,272	+		DZA65_RS18660	0.11	+0.0
4,019,272	+				-0.9
4,019,273	-		DZA65_RS18660	0.11	-2.3
4,019,273	-		DZA65_RS18660	0.11	+0.1
4,019,273	-		DZA65_RS18660	0.11	+0.4
4,019,273	-		DZA65_RS18660	0.11	+0.3
4,019,273	-		DZA65_RS18660	0.11	-0.9
4,019,273	-		DZA65_RS18660	0.11	-2.3
4,019,273	-		DZA65_RS18660	0.11	+0.5
4,019,273	-		DZA65_RS18660	0.11	+1.7
4,019,273	-		DZA65_RS18660	0.11	+0.2
4,019,273	-		DZA65_RS18660	0.11	+1.8
4,019,273	-		DZA65_RS18660	0.11	+0.5
4,019,273	-		DZA65_RS18660	0.11	-1.4
4,019,273	-		DZA65_RS18660	0.11	+0.3
4,019,306	+		DZA65_RS18660	0.15	-1.5
4,019,306	+		DZA65_RS18660	0.15	+1.5
4,019,306	+		DZA65_RS18660	0.15	+0.7
4,019,306	+		DZA65_RS18660	0.15	+1.8
4,019,306	+		DZA65_RS18660	0.15	-0.6
4,019,306	+		DZA65_RS18660	0.15	+0.5
4,019,307	-		DZA65_RS18660	0.15	+1.7
4,019,307	-		DZA65_RS18660	0.15	+3.0
4,019,307	-		DZA65_RS18660	0.15	-0.7
4,019,307	-		DZA65_RS18660	0.15	+0.8
4,019,307	-		DZA65_RS18660	0.15	+1.1
4,019,307	-		DZA65_RS18660	0.15	-0.7
4,019,322	-		DZA65_RS18660	0.17	+1.0
4,019,378	+		DZA65_RS18660	0.25	-1.9
4,019,378	+		DZA65_RS18660	0.25	+0.0
4,019,378	+		DZA65_RS18660	0.25	+0.3
4,019,378	+		DZA65_RS18660	0.25	+0.2
4,019,379	-		DZA65_RS18660	0.25	-0.2
4,019,379	-		DZA65_RS18660	0.25	+0.7
4,019,401	-		DZA65_RS18660	0.28	-0.7
4,019,442	+		DZA65_RS18660	0.33	+0.2
4,019,442	+		DZA65_RS18660	0.33	+0.2
4,019,442	+		DZA65_RS18660	0.33	+0.7
4,019,443	-		DZA65_RS18660	0.33	-0.5
4,019,475	+		DZA65_RS18660	0.37	-0.4
4,019,475	+		DZA65_RS18660	0.37	+0.1
4,019,475	+		DZA65_RS18660	0.37	-0.5
4,019,475	+		DZA65_RS18660	0.37	+0.7
4,019,475	+		DZA65_RS18660	0.37	+0.2
4,019,475	+		DZA65_RS18660	0.37	+1.3
4,019,479	+		DZA65_RS18660	0.38	-0.3
4,019,480	-		DZA65_RS18660	0.38	-0.0
4,019,480	-		DZA65_RS18660	0.38	+0.3
4,019,480	-				-0.3
4,019,480	-		DZA65_RS18660	0.38	-0.0
4,019,480	-		DZA65_RS18660	0.38	+2.0
4,019,480	-		DZA65_RS18660	0.38	+2.5
4,019,480	-		DZA65_RS18660	0.38	+2.6