Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18600

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,006,022	-				+0.3
4,006,038	+				-0.7
4,006,039	-				-0.3
4,006,039	-				-0.7
4,006,207	+		DZA65_RS18590	0.19	-1.2
4,006,297	+		DZA65_RS18590	0.31	-0.1
4,006,297	+		DZA65_RS18590	0.31	-1.0
4,006,297	+		DZA65_RS18590	0.31	-0.9
4,006,297	+		DZA65_RS18590	0.31	+0.3
4,006,298	-		DZA65_RS18590	0.31	+0.7
4,006,298	-		DZA65_RS18590	0.31	-0.3
4,006,298	-		DZA65_RS18590	0.31	-1.4
4,006,298	-		DZA65_RS18590	0.31	+0.1
4,006,298	-		DZA65_RS18590	0.31	-2.8
4,006,298	-		DZA65_RS18590	0.31	+0.9
4,006,298	-		DZA65_RS18590	0.31	+0.0
4,006,301	+		DZA65_RS18590	0.32	-1.3
4,006,301	+		DZA65_RS18590	0.32	-1.5
4,006,301	+		DZA65_RS18590	0.32	-0.9
4,006,301	+		DZA65_RS18590	0.32	-0.9
4,006,301	+		DZA65_RS18590	0.32	+1.4
4,006,301	+		DZA65_RS18590	0.32	-0.3
4,006,301	+		DZA65_RS18590	0.32	+0.4
4,006,301	+		DZA65_RS18590	0.32	+1.8
4,006,301	+		DZA65_RS18590	0.32	+0.3
4,006,301	+		DZA65_RS18590	0.32	-0.3
4,006,301	+		DZA65_RS18590	0.32	-0.0
4,006,301	+		DZA65_RS18590	0.32	+0.1
4,006,301	+		DZA65_RS18590	0.32	-0.6
4,006,301	+		DZA65_RS18590	0.32	+1.6
4,006,302	-		DZA65_RS18590	0.32	+0.7
4,006,302	-		DZA65_RS18590	0.32	+0.7
4,006,302	-		DZA65_RS18590	0.32	+0.6
4,006,302	-		DZA65_RS18590	0.32	+0.7
4,006,302	-		DZA65_RS18590	0.32	+2.3
4,006,302	-		DZA65_RS18590	0.32	+0.3
4,006,302	-		DZA65_RS18590	0.32	+1.1
4,006,302	-		DZA65_RS18590	0.32	+2.7
4,006,302	-		DZA65_RS18590	0.32	+0.2
4,006,302	-				+0.7
4,006,302	-		DZA65_RS18590	0.32	+0.7
4,006,302	-		DZA65_RS18590	0.32	+4.1
4,006,302	-		DZA65_RS18590	0.32	-0.3
4,006,302	-		DZA65_RS18590	0.32	-0.4
4,006,302	-		DZA65_RS18590	0.32	-0.3
4,006,302	-		DZA65_RS18590	0.32	+1.5
4,006,302	-		DZA65_RS18590	0.32	-2.9
4,006,302	-		DZA65_RS18590	0.32	+0.7
4,006,302	-		DZA65_RS18590	0.32	+0.3
4,006,302	-		DZA65_RS18590	0.32	+0.7
4,006,303	+		DZA65_RS18590	0.32	-0.7
4,006,304	-		DZA65_RS18590	0.32	-0.3
4,006,304	-		DZA65_RS18590	0.32	-0.7
4,006,355	-		DZA65_RS18590	0.40	+0.7
4,006,445	+		DZA65_RS18590	0.52	+0.1
4,006,445	+		DZA65_RS18590	0.52	+0.1
4,006,445	+		DZA65_RS18590	0.52	-0.4
4,006,446	-		DZA65_RS18590	0.52	-2.1
4,006,446	-		DZA65_RS18590	0.52	+0.2
4,006,450	+		DZA65_RS18590	0.53	+0.8
4,006,490	+		DZA65_RS18590	0.59	+0.2
4,006,490	+		DZA65_RS18590	0.59	-0.1
4,006,490	+		DZA65_RS18590	0.59	-1.6
4,006,490	+		DZA65_RS18590	0.59	+0.1
4,006,490	+		DZA65_RS18590	0.59	+0.3
4,006,490	+		DZA65_RS18590	0.59	+1.8
4,006,490	+		DZA65_RS18590	0.59	+0.1
4,006,491	-		DZA65_RS18590	0.59	+1.2
4,006,491	-		DZA65_RS18590	0.59	+0.7
4,006,491	-		DZA65_RS18590	0.59	+1.7
4,006,503	-		DZA65_RS18590	0.61	-0.1
4,006,503	-				+1.7
4,006,537	+		DZA65_RS18590	0.65	-0.6
4,006,580	+		DZA65_RS18590	0.71	-0.0
4,006,580	+		DZA65_RS18590	0.71	-1.5
4,006,580	+		DZA65_RS18590	0.71	+0.1
4,006,581	-		DZA65_RS18590	0.72	-1.0
4,006,581	-		DZA65_RS18590	0.72	+0.2
4,006,585	+		DZA65_RS18590	0.72	-0.4
4,006,586	-		DZA65_RS18590	0.72	+0.9
4,006,609	+		DZA65_RS18590	0.76	+0.2
4,006,609	+		DZA65_RS18590	0.76	-0.0
4,006,609	+		DZA65_RS18590	0.76	+2.7
4,006,609	+		DZA65_RS18590	0.76	-1.1
4,006,610	-		DZA65_RS18590	0.76	-0.1
4,006,733	+				+0.5
4,006,733	+				-0.3
4,006,740	-				-2.5
4,006,749	-				+1.7
4,006,760	+				+0.7
4,006,760	+				-0.9
4,006,760	+				-0.1
4,006,760	+				+0.4
4,006,760	+				+0.6
4,006,760	+				+0.5
4,006,760	+				+0.7
4,006,760	+				-1.0
4,006,760	+				+0.5
4,006,760	+				+1.0
4,006,760	+				-1.1
4,006,761	-				-0.1
4,006,761	-				-1.1
4,006,761	-				+0.1
4,006,761	-				+1.0
4,006,761	-				+0.5
4,006,761	-				+0.4
4,006,761	-				+0.6
4,006,761	-				+0.6
4,006,761	-				+0.8
4,006,761	-				-0.1
4,006,761	-				+0.7
4,006,761	-				-0.5
4,006,770	+				+0.3
4,006,770	+				-1.3
4,006,770	+				-0.2
4,006,770	+				+0.4
4,006,770	+				-1.3
4,006,771	-				-1.1
4,006,771	-				+0.2
4,006,771	-				-1.8
4,006,855	-				-0.6
4,006,987	-		DZA65_RS18600	0.55	-0.6
4,006,987	-		DZA65_RS18600	0.55	+1.0
4,006,987	-		DZA65_RS18600	0.55	-0.7
4,007,010	+		DZA65_RS18600	0.85	-2.2
4,007,010	+		DZA65_RS18600	0.85	-1.5
4,007,050	+				-1.5
4,007,051	-				-0.5
4,007,076	-				+0.4
4,007,076	-				-0.2
4,007,370	+		DZA65_RS18605	0.30	+0.5
4,007,370	+		DZA65_RS18605	0.30	-1.9
4,007,371	-		DZA65_RS18605	0.30	-0.7
4,007,559	+		DZA65_RS18605	0.49	-0.8
4,007,559	+		DZA65_RS18605	0.49	+0.9
4,007,559	+		DZA65_RS18605	0.49	-1.5
4,007,560	-		DZA65_RS18605	0.49	-1.9
4,007,560	-		DZA65_RS18605	0.49	+0.1
4,007,560	-		DZA65_RS18605	0.49	+0.3
4,007,560	-		DZA65_RS18605	0.49	-1.2
4,007,560	-		DZA65_RS18605	0.49	+0.6
4,007,587	+		DZA65_RS18605	0.51	-2.3
4,007,587	+		DZA65_RS18605	0.51	+0.9
4,007,587	+		DZA65_RS18605	0.51	+0.7
4,007,643	+		DZA65_RS18605	0.57	+0.8
4,007,807	+		DZA65_RS18605	0.73	-0.1
4,007,808	-		DZA65_RS18605	0.73	+1.3
4,007,811	+		DZA65_RS18605	0.74	+0.7
4,007,811	+		DZA65_RS18605	0.74	+0.8
4,007,811	+		DZA65_RS18605	0.74	+0.1
4,007,812	-		DZA65_RS18605	0.74	-1.9
4,007,812	-		DZA65_RS18605	0.74	+0.5
4,007,812	-		DZA65_RS18605	0.74	-0.1
4,007,812	-		DZA65_RS18605	0.74	+1.2
4,007,844	+		DZA65_RS18605	0.77	-0.5
4,007,845	-		DZA65_RS18605	0.77	+1.1
4,007,845	-		DZA65_RS18605	0.77	-2.3
4,007,881	+		DZA65_RS18605	0.81	-0.5
4,007,881	+		DZA65_RS18605	0.81	-1.1
4,007,881	+		DZA65_RS18605	0.81	-0.5
4,007,882	-		DZA65_RS18605	0.81	-0.7
4,007,882	-		DZA65_RS18605	0.81	+0.7
4,007,882	-		DZA65_RS18605	0.81	-0.5
4,007,882	-		DZA65_RS18605	0.81	-0.5
4,007,882	-		DZA65_RS18605	0.81	-0.9
4,007,882	-		DZA65_RS18605	0.81	-1.6
4,007,882	-		DZA65_RS18605	0.81	-1.8
4,007,882	-		DZA65_RS18605	0.81	+1.7
4,007,882	-		DZA65_RS18605	0.81	-0.5
4,007,882	-		DZA65_RS18605	0.81	+0.4
4,007,948	-		DZA65_RS18605	0.87	-0.9
4,008,010	+				+0.2
4,008,010	+				+0.7
4,008,011	-				-0.1