Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18550

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,996,456	-				-0.3
3,996,552	+		DZA65_RS18545	0.18	+0.7
3,996,553	-		DZA65_RS18545	0.18	+0.4
3,996,553	-		DZA65_RS18545	0.18	-0.2
3,996,553	-		DZA65_RS18545	0.18	-2.1
3,996,553	-		DZA65_RS18545	0.18	-0.8
3,996,553	-		DZA65_RS18545	0.18	+1.9
3,996,696	-		DZA65_RS18545	0.32	+0.9
3,996,701	+		DZA65_RS18545	0.32	-0.0
3,996,701	+		DZA65_RS18545	0.32	-0.9
3,996,701	+		DZA65_RS18545	0.32	+0.6
3,996,702	-		DZA65_RS18545	0.33	+0.9
3,996,702	-		DZA65_RS18545	0.33	-0.7
3,996,702	-		DZA65_RS18545	0.33	+0.1
3,996,702	-		DZA65_RS18545	0.33	+1.3
3,996,736	+		DZA65_RS18545	0.36	+2.3
3,996,736	+		DZA65_RS18545	0.36	-0.1
3,996,736	+		DZA65_RS18545	0.36	-0.8
3,996,736	+		DZA65_RS18545	0.36	-0.8
3,996,736	+		DZA65_RS18545	0.36	-0.1
3,996,736	+		DZA65_RS18545	0.36	-1.1
3,996,737	-		DZA65_RS18545	0.36	+1.9
3,996,737	-		DZA65_RS18545	0.36	+0.5
3,996,737	-		DZA65_RS18545	0.36	+0.4
3,996,739	-		DZA65_RS18545	0.36	-0.4
3,996,884	-		DZA65_RS18545	0.51	+0.2
3,996,918	+		DZA65_RS18545	0.54	+0.1
3,996,918	+		DZA65_RS18545	0.54	+0.9
3,996,919	-		DZA65_RS18545	0.54	-0.9
3,996,919	-		DZA65_RS18545	0.54	-0.9
3,996,919	-		DZA65_RS18545	0.54	+1.0
3,996,919	-		DZA65_RS18545	0.54	-0.9
3,996,993	+		DZA65_RS18545	0.61	+1.7
3,996,993	+		DZA65_RS18545	0.61	-2.1
3,997,000	+		DZA65_RS18545	0.62	-0.9
3,997,000	+		DZA65_RS18545	0.62	+2.4
3,997,000	+		DZA65_RS18545	0.62	-1.3
3,997,001	-				-0.9
3,997,116	+		DZA65_RS18545	0.73	+0.4
3,997,116	+		DZA65_RS18545	0.73	+1.3
3,997,116	+		DZA65_RS18545	0.73	+1.7
3,997,116	+		DZA65_RS18545	0.73	-1.3
3,997,117	-		DZA65_RS18545	0.74	-0.6
3,997,117	-		DZA65_RS18545	0.74	-1.1
3,997,117	-		DZA65_RS18545	0.74	-1.6
3,997,117	-		DZA65_RS18545	0.74	-0.6
3,997,134	-		DZA65_RS18545	0.75	-0.9
3,997,134	-		DZA65_RS18545	0.75	+0.6
3,997,181	+		DZA65_RS18545	0.80	-0.3
3,997,181	+		DZA65_RS18545	0.80	-1.3
3,997,182	-		DZA65_RS18545	0.80	-0.3
3,997,182	-		DZA65_RS18545	0.80	-0.3
3,997,213	+		DZA65_RS18545	0.83	+0.9
3,997,213	+		DZA65_RS18545	0.83	-0.1
3,997,214	-		DZA65_RS18545	0.83	+0.4
3,997,240	+		DZA65_RS18545	0.86	-1.9
3,997,240	+		DZA65_RS18545	0.86	+2.0
3,997,240	+		DZA65_RS18545	0.86	-0.6
3,997,240	+		DZA65_RS18545	0.86	-0.7
3,997,240	+		DZA65_RS18545	0.86	+2.1
3,997,240	+		DZA65_RS18545	0.86	-0.5
3,997,240	+				+0.7
3,997,241	-		DZA65_RS18545	0.86	-0.2
3,997,241	-		DZA65_RS18545	0.86	+1.9
3,997,400	+				-0.9
3,997,401	-				+0.6
3,997,505	+				-2.4
3,997,505	+				+0.1
3,997,505	+				-1.3
3,997,505	+				+1.5
3,997,505	+				-2.3
3,997,506	-				-0.1
3,997,506	-				-0.6
3,997,506	-				-1.9
3,997,506	-				-1.6
3,997,506	-				-0.4
3,997,529	+		DZA65_RS18550	0.10	+0.2
3,997,556	+		DZA65_RS18550	0.12	-2.1
3,997,556	+		DZA65_RS18550	0.12	-0.1
3,997,556	+		DZA65_RS18550	0.12	-3.4
3,997,557	-		DZA65_RS18550	0.13	-0.3
3,997,681	+		DZA65_RS18550	0.22	-0.3
3,997,681	+		DZA65_RS18550	0.22	-1.3
3,997,681	+		DZA65_RS18550	0.22	+0.3
3,997,682	-		DZA65_RS18550	0.22	-0.0
3,997,682	-		DZA65_RS18550	0.22	-0.6
3,997,682	-		DZA65_RS18550	0.22	+1.0
3,997,682	-		DZA65_RS18550	0.22	-0.3
3,997,721	+		DZA65_RS18550	0.25	-2.0
3,997,721	+		DZA65_RS18550	0.25	-0.9
3,997,722	-		DZA65_RS18550	0.26	-0.3
3,997,730	+		DZA65_RS18550	0.26	-2.3
3,997,730	+		DZA65_RS18550	0.26	-2.2
3,997,730	+		DZA65_RS18550	0.26	-2.3
3,997,730	+		DZA65_RS18550	0.26	-1.8
3,997,731	-		DZA65_RS18550	0.26	-0.9
3,997,731	-		DZA65_RS18550	0.26	-0.9
3,997,731	-		DZA65_RS18550	0.26	-2.5
3,997,731	-		DZA65_RS18550	0.26	+0.0
3,997,931	+		DZA65_RS18550	0.42	-1.3
3,997,931	+		DZA65_RS18550	0.42	-0.2
3,997,932	-		DZA65_RS18550	0.42	+0.1
3,997,932	-		DZA65_RS18550	0.42	-2.1
3,997,932	-		DZA65_RS18550	0.42	-0.2
3,997,932	-		DZA65_RS18550	0.42	-2.6
3,997,932	-		DZA65_RS18550	0.42	-1.2
3,997,941	+		DZA65_RS18550	0.43	-1.8
3,998,159	+		DZA65_RS18550	0.60	-2.0
3,998,160	-		DZA65_RS18550	0.60	-1.0
3,998,232	+		DZA65_RS18550	0.66	-0.4
3,998,233	-		DZA65_RS18550	0.66	-1.3
3,998,235	+		DZA65_RS18550	0.66	-0.3
3,998,235	+		DZA65_RS18550	0.66	+0.4
3,998,236	-		DZA65_RS18550	0.66	-2.1
3,998,236	-		DZA65_RS18550	0.66	-0.9
3,998,236	-		DZA65_RS18550	0.66	-0.9
3,998,236	-		DZA65_RS18550	0.66	-0.9
3,998,326	+		DZA65_RS18550	0.73	-2.5
3,998,326	+		DZA65_RS18550	0.73	-2.2
3,998,327	-		DZA65_RS18550	0.73	-1.5
3,998,327	-		DZA65_RS18550	0.73	-3.3
3,998,327	-		DZA65_RS18550	0.73	-1.1
3,998,371	+		DZA65_RS18550	0.77	-2.8
3,998,371	+		DZA65_RS18550	0.77	+0.4
3,998,371	+		DZA65_RS18550	0.77	+0.3
3,998,371	+		DZA65_RS18550	0.77	-1.6
3,998,481	+		DZA65_RS18550	0.86	-0.9
3,998,482	-		DZA65_RS18550	0.86	-3.4
3,998,482	-		DZA65_RS18550	0.86	-2.3
3,998,482	-		DZA65_RS18550	0.86	-2.1
3,998,488	-		DZA65_RS18550	0.86	-2.5
3,998,556	+				-1.6
3,998,557	-				-1.8
3,998,557	-				-0.3
3,998,557	-				+1.1
3,998,571	-				+1.3
3,998,670	+				-0.3
3,998,675	+				-1.6
3,998,675	+				-1.6
3,998,676	-				+0.6
3,998,676	-				-0.3
3,998,676	-				-0.2
3,998,714	+				-0.8
3,998,714	+				-0.8
3,998,714	+				-1.3
3,998,714	+				-0.9
3,998,714	+				-2.1
3,998,714	+				-1.6
3,998,715	-				+0.9
3,998,715	-				+0.0
3,998,773	+				-0.2
3,998,774	-				+0.4
3,998,774	-				+0.7
3,998,785	-				+0.9
3,998,860	+				-0.1
3,998,948	+		DZA65_RS18555	0.18	-0.3
3,998,948	+		DZA65_RS18555	0.18	-1.1
3,998,949	-		DZA65_RS18555	0.18	-1.6
3,998,949	-		DZA65_RS18555	0.18	-1.5
3,998,973	+		DZA65_RS18555	0.21	-1.4
3,998,996	+		DZA65_RS18555	0.23	-2.3
3,998,996	+		DZA65_RS18555	0.23	-0.9
3,998,996	+		DZA65_RS18555	0.23	+0.3
3,998,996	+		DZA65_RS18555	0.23	-0.3
3,998,997	-		DZA65_RS18555	0.24	+0.7
3,998,997	-		DZA65_RS18555	0.24	+1.3
3,998,997	-		DZA65_RS18555	0.24	+0.5
3,998,997	-		DZA65_RS18555	0.24	-0.1
3,998,997	-		DZA65_RS18555	0.24	-0.9
3,998,999	+		DZA65_RS18555	0.24	-0.3
3,999,233	-		DZA65_RS18555	0.48	-0.7
3,999,233	-		DZA65_RS18555	0.48	-0.9
3,999,270	+		DZA65_RS18555	0.52	-0.7
3,999,270	+		DZA65_RS18555	0.52	+0.5
3,999,270	+		DZA65_RS18555	0.52	+0.3
3,999,271	-		DZA65_RS18555	0.52	-0.5
3,999,524	+		DZA65_RS18555	0.79	-2.1
3,999,645	+				-2.8
3,999,645	+				-0.7
3,999,645	+				+0.3
3,999,646	-				-0.1
3,999,646	-				-1.2
3,999,646	-				+0.3
3,999,646	-				+1.7