Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18320

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,951,568	+				+0.8
3,951,568	+				-0.4
3,951,569	-				-0.6
3,951,695	+				+2.5
3,951,695	+				-0.2
3,951,695	+				+0.1
3,951,695	+				+0.4
3,951,695	+				+1.4
3,951,696	-				-0.8
3,951,696	-				+0.2
3,951,710	+				+0.3
3,951,711	-				-0.6
3,951,717	-				-0.7
3,951,717	-				+0.5
3,951,717	-				+1.6
3,951,729	+				+0.1
3,951,748	+				+0.6
3,951,748	+				+0.3
3,951,748	+				-0.5
3,951,749	-				+0.5
3,951,749	-				-0.2
3,951,749	-				+0.4
3,951,749	-				+1.9
3,951,751	+				-0.3
3,951,751	+				-0.1
3,951,752	-				-2.2
3,951,754	+				+0.2
3,951,767	+				+1.3
3,951,767	+				-0.4
3,951,767	+				-0.6
3,951,767	+				+1.4
3,951,768	-				-1.7
3,951,768	-				-1.2
3,951,768	-				+0.5
3,951,770	+				-0.5
3,951,771	-				-1.3
3,951,773	+				-0.9
3,951,774	-				-0.4
3,951,774	-				-0.0
3,951,786	+				-0.4
3,951,787	-				-0.0
3,951,787	-				-0.4
3,951,787	-				-1.8
3,951,803	-				-1.4
3,951,803	-				-1.2
3,951,865	-		DZA65_RS18315	0.14	+1.0
3,951,865	-		DZA65_RS18315	0.14	-0.2
3,951,905	+		DZA65_RS18315	0.33	+1.5
3,951,905	+		DZA65_RS18315	0.33	+0.2
3,951,905	+		DZA65_RS18315	0.33	+0.1
3,951,905	+		DZA65_RS18315	0.33	+1.4
3,951,906	-		DZA65_RS18315	0.33	+0.5
3,951,906	-		DZA65_RS18315	0.33	-0.3
3,951,965	+		DZA65_RS18315	0.62	-0.7
3,951,966	-		DZA65_RS18315	0.62	-0.1
3,951,970	+		DZA65_RS18315	0.64	-0.2
3,951,970	+		DZA65_RS18315	0.64	-0.8
3,951,970	+		DZA65_RS18315	0.64	-2.9
3,951,970	+		DZA65_RS18315	0.64	+0.4
3,951,970	+		DZA65_RS18315	0.64	-1.7
3,951,970	+		DZA65_RS18315	0.64	-0.1
3,951,970	+		DZA65_RS18315	0.64	-1.2
3,951,971	-		DZA65_RS18315	0.65	+0.6
3,951,971	-		DZA65_RS18315	0.65	-0.7
3,951,971	-		DZA65_RS18315	0.65	+1.5
3,951,971	-		DZA65_RS18315	0.65	-0.8
3,951,971	-		DZA65_RS18315	0.65	+0.8
3,951,971	-		DZA65_RS18315	0.65	+0.5
3,951,971	-		DZA65_RS18315	0.65	+1.9
3,951,971	-		DZA65_RS18315	0.65	-0.7
3,951,971	-		DZA65_RS18315	0.65	+0.0
3,951,971	-		DZA65_RS18315	0.65	-0.7
3,951,971	-				-1.4
3,951,971	-		DZA65_RS18315	0.65	+0.8
3,952,000	+		DZA65_RS18315	0.79	+0.4
3,952,000	+		DZA65_RS18315	0.79	-0.4
3,952,000	+		DZA65_RS18315	0.79	-0.3
3,952,000	+		DZA65_RS18315	0.79	-1.1
3,952,000	+		DZA65_RS18315	0.79	-0.7
3,952,000	+		DZA65_RS18315	0.79	-0.1
3,952,001	-		DZA65_RS18315	0.79	+1.2
3,952,001	-		DZA65_RS18315	0.79	+0.4
3,952,001	-		DZA65_RS18315	0.79	+1.6
3,952,001	-		DZA65_RS18315	0.79	+1.6
3,952,001	-		DZA65_RS18315	0.79	+1.6
3,952,001	-		DZA65_RS18315	0.79	+0.8
3,952,024	+				-1.4
3,952,024	+				-0.8
3,952,024	+				+1.0
3,952,025	-				-0.9
3,952,025	-				+0.6
3,952,025	-				+0.2
3,952,025	-				-0.2
3,952,025	-				+0.8
3,952,125	+				+0.3
3,952,126	-				+0.6
3,952,126	-				-0.4
3,952,126	-				-0.8
3,952,131	+				-0.1
3,952,131	+				+0.7
3,952,131	+				-0.7
3,952,132	-				-2.4
3,952,132	-				-1.4
3,952,132	-				+0.2
3,952,144	+				+0.1
3,952,144	+				+1.2
3,952,144	+				+1.4
3,952,144	+				-1.7
3,952,144	+				-1.2
3,952,144	+				-1.4
3,952,144	+				-0.2
3,952,144	+				-0.5
3,952,144	+				+2.3
3,952,145	-				+0.8
3,952,145	-				+0.8
3,952,145	-				-1.4
3,952,145	-				+0.6
3,952,145	-				+0.4
3,952,145	-				+0.5
3,952,145	-				-1.2
3,952,145	-				-0.9
3,952,145	-				+0.1
3,952,147	+				+0.9
3,952,147	+				+0.3
3,952,147	+				+0.1
3,952,147	+				-0.8
3,952,148	-				+1.6
3,952,148	-				+0.1
3,952,148	-				+0.4
3,952,148	-				+0.1
3,952,148	-				-0.6
3,952,148	-				-0.3
3,952,148	-				-0.6
3,952,148	-				-0.5
3,952,148	-				+0.4
3,952,148	-				-0.1
3,952,162	+				-0.1
3,952,162	+				+0.6
3,952,162	+				-0.9
3,952,162	+				+0.5
3,952,162	+				-0.1
3,952,162	+				-0.2
3,952,163	-				-1.2
3,952,163	-				+0.1
3,952,163	-				+0.3
3,952,166	-				-0.1
3,952,166	-				+0.1
3,952,180	+				+0.4
3,952,180	+				+1.5
3,952,180	+				+0.1
3,952,180	+				-0.4
3,952,180	+				-0.4
3,952,180	+				-0.7
3,952,181	-				-2.8
3,952,181	-				+0.5
3,952,181	-				-1.2
3,952,183	+				+0.9
3,952,183	+				+0.5
3,952,183	+				-0.9
3,952,184	-				-0.3
3,952,198	+				+0.5
3,952,198	+				+0.6
3,952,198	+				+0.1
3,952,198	+				+0.5
3,952,199	-				-0.9
3,952,250	-				-0.1
3,952,253	+				+0.4
3,952,263	-				+1.0
3,952,284	+				-0.0
3,952,285	-				+0.0
3,952,310	-				-0.4
3,952,323	-				-1.1
3,952,341	+				-0.1
3,952,341	+				-0.1
3,952,341	+				+3.2
3,952,341	+				+0.2
3,952,342	-				+0.7
3,952,342	-				-0.4
3,952,342	-				-0.6
3,952,348	+				-0.6
3,952,348	+				-1.7
3,952,348	+				+0.4
3,952,348	+				-0.3
3,952,371	+				-0.9
3,952,371	+				-1.2
3,952,372	-				-0.6
3,952,372	-				-0.4
3,952,372	-				-0.2
3,952,403	-				+2.0
3,952,444	+				+0.3
3,952,444	+				+1.0
3,952,444	+				+1.2
3,952,444	+				-0.9
3,952,444	+				+1.0
3,952,444	+				+2.0
3,952,445	-				+0.4
3,952,445	-				+0.8
3,952,494	+				-0.2
3,952,495	-				-1.2
3,952,587	+				-1.5
3,952,587	+				-0.1
3,952,753	+		DZA65_RS18320	0.29	-2.4
3,952,753	+		DZA65_RS18320	0.29	+0.2
3,952,754	-		DZA65_RS18320	0.30	-0.6
3,952,754	-		DZA65_RS18320	0.30	-0.4
3,952,754	-		DZA65_RS18320	0.30	-3.3
3,952,754	-		DZA65_RS18320	0.30	+0.1
3,952,754	-		DZA65_RS18320	0.30	-1.9
3,952,780	-		DZA65_RS18320	0.33	-1.7
3,952,780	-		DZA65_RS18320	0.33	-1.9
3,952,818	-		DZA65_RS18320	0.38	-1.7
3,952,905	+		DZA65_RS18320	0.50	-0.1
3,952,905	+		DZA65_RS18320	0.50	-1.9
3,952,929	+		DZA65_RS18320	0.53	-2.7
3,952,929	+		DZA65_RS18320	0.53	+0.6
3,952,929	+		DZA65_RS18320	0.53	+0.1
3,952,929	+		DZA65_RS18320	0.53	+1.4
3,952,929	+		DZA65_RS18320	0.53	-3.4
3,952,930	-		DZA65_RS18320	0.53	-1.8
3,952,930	-		DZA65_RS18320	0.53	-0.2
3,952,930	-		DZA65_RS18320	0.53	-1.1
3,952,930	-		DZA65_RS18320	0.53	-1.4
3,952,932	-		DZA65_RS18320	0.54	-2.9
3,952,932	-		DZA65_RS18320	0.54	+0.2
3,953,192	+		DZA65_RS18320	0.89	-0.6
3,953,215	+				-1.4
3,953,217	+				-1.2
3,953,218	-				-2.3
3,953,270	+				-1.8
3,953,270	+				+1.2
3,953,271	-				-1.9
3,953,271	-				-2.4
3,953,289	+				+0.2
3,953,289	+				+0.4
3,953,290	-				+1.2
3,953,290	-				-0.8
3,953,290	-				-1.5
3,953,290	-				-0.5
3,953,290	-				+0.8
3,953,291	+				-1.2
3,953,291	+				-0.4
3,953,291	+				+1.1
3,953,291	+				+0.9
3,953,291	+				-0.8
3,953,291	+				-0.7
3,953,291	+				-0.6
3,953,291	+				-0.8
3,953,291	+				-0.1
3,953,291	+				-0.2
3,953,291	+				+1.4
3,953,291	+				-3.3
3,953,291	+				-1.9
3,953,291	+				-0.7
3,953,291	+				-0.2
3,953,291	+				+0.2
3,953,292	-				-0.2
3,953,292	-				-0.9
3,953,292	-				-0.4
3,953,292	-				+1.2
3,953,292	-				-0.6
3,953,292	-				-1.4
3,953,292	-				-0.2
3,953,292	-				+0.5
3,953,292	-				-2.2
3,953,292	-				-1.8
3,953,292	-				+0.8
3,953,292	-				+0.2
3,953,292	-				+0.6
3,953,292	-				+0.2
3,953,292	-				-2.4
3,953,292	-				+0.5
3,953,292	-				+1.1
3,953,292	-				+1.4
3,953,292	-				+0.6
3,953,292	-				-2.1
3,953,295	+				+0.4
3,953,295	+				+0.1
3,953,295	+				+2.5
3,953,295	+				-1.5
3,953,295	+				-0.7
3,953,295	+				+1.1
3,953,296	-				-0.9
3,953,296	-				+1.5
3,953,364	-				-0.7
3,953,364	-				-0.4
3,953,364	-				-1.6
3,953,364	-				+0.1
3,953,364	-				+0.4
3,953,364	-				-0.4
3,953,450	+				-1.5
3,953,450	+				+1.5
3,953,451	-				+1.0
3,953,451	-				-0.3
3,953,461	+				-1.9
3,953,461	+				+0.5
3,953,462	-				+1.1
3,953,494	-				-1.9
3,953,494	-				-0.0
3,953,494	-				+0.2
3,953,494	-				+0.5
3,953,585	+				-0.3
3,953,586	-				+0.9
3,953,594	+				+0.1
3,953,597	+				-0.2
3,953,598	-				-0.9
3,953,598	-				+1.2
3,953,624	+				+1.1
3,953,625	-				-0.2
3,953,625	-				+0.4
3,953,625	-				-0.2
3,953,633	+				-2.8
3,953,633	+				+0.2
3,953,633	+				-0.7
3,953,633	+				-0.2
3,953,633	+				-0.7
3,953,633	+				-0.2
3,953,633	+				+3.8
3,953,634	-				+1.1
3,953,634	-				+0.8
3,953,634	-				+0.2
3,953,634	-				+0.6
3,953,635	+				+0.2
3,953,635	+				-2.5
3,953,635	+				-0.9
3,953,635	+				+0.4
3,953,635	+				-1.4
3,953,635	+				-0.4
3,953,635	+				-0.1
3,953,635	+				-0.4
3,953,636	-				+0.9
3,953,636	-				-0.5
3,953,636	-				+0.6
3,953,636	-				+0.4
3,953,636	-				-1.9
3,953,636	-				+0.2
3,953,636	-				-0.6
3,953,636	-				+1.9
3,953,636	-				-0.4
3,953,662	+				-1.2
3,953,662	+				+0.3
3,953,666	+				+0.6
3,953,716	+				-1.4
3,953,716	+				+1.3
3,953,717	-				-0.9
3,953,717	-				-0.6
3,953,717	-				-0.7
3,953,717	-				+1.2
3,953,717	-				+0.1
3,953,717	-				-2.9
3,953,717	-				+0.5
3,953,717	-				+0.4
3,953,717	-				+0.1
3,953,718	+				+0.9
3,953,718	+				+1.0
3,953,718	+				+0.9
3,953,719	-				+2.5
3,953,719	-				+0.0
3,953,719	-				+0.6
3,953,719	-				-0.6
3,953,759	+				-0.0
3,953,759	+				-0.2
3,953,759	+				+0.6
3,953,759	+				+0.3
3,953,760	-				-0.5
3,953,760	-				+0.4
3,953,760	-				-0.9
3,953,783	-				-0.4
3,953,791	+				-0.7
3,953,791	+				+0.9
3,953,791	+				+1.4
3,953,791	+				+0.6
3,953,791	+				+0.5
3,953,791	+				-0.4
3,953,791	+				+0.1
3,953,791	+				-1.4
3,953,792	-				+0.3
3,953,792	-				-0.8
3,953,792	-				-0.1
3,953,792	-				-2.4
3,953,857	-				-0.9
3,953,857	-				+0.1
3,953,890	+				+0.4
3,953,890	+				+1.1
3,953,890	+				+1.8
3,953,890	+				+0.2
3,953,890	+				+2.5
3,953,890	+				-0.4
3,953,890	+				-0.9
3,953,890	+				+0.5
3,953,890	+				+0.3
3,953,890	+				+0.9
3,953,891	-				+0.8
3,953,891	-				+1.4
3,953,891	-				+0.1
3,953,891	-				-1.2
3,953,891	-				-1.9
3,953,891	-				-0.4
3,953,900	+				+0.4
3,953,900	+				+0.6
3,953,900	+				+1.1
3,953,900	+				-0.3
3,953,900	+				+0.1
3,953,900	+				+1.0
3,953,900	+				-0.3
3,953,901	-				-0.4
3,953,901	-				-0.8
3,953,901	-				-2.2
3,953,901	-				-0.0
3,953,906	+				-0.8
3,953,906	+				+0.4
3,953,906	+				+0.3
3,953,907	-				-0.6
3,953,907	-				-1.5
3,953,909	+				+0.2
3,953,909	+				-1.4
3,953,909	+				+1.2
3,953,909	+				+0.0
3,953,910	-				-2.4
3,953,910	-				+0.6
3,953,910	-				+0.3
3,953,910	-				+0.2
3,953,910	-				-0.4
3,953,910	-				+0.6
3,953,910	-				+0.4
3,953,910	-				-1.9
3,953,910	-				-0.9
3,953,910	-				+1.1
3,953,910	-				-0.4
3,953,911	+				-0.4
3,953,911	+				-2.7
3,953,912	-				+0.3
3,953,912	-				-0.8
3,953,912	-				-1.1
3,953,912	-				+0.9
3,953,929	+				+0.7
3,953,994	+		DZA65_RS18330	0.11	+0.3
3,953,995	-		DZA65_RS18330	0.11	+0.3
3,954,016	+		DZA65_RS18330	0.12	+0.6
3,954,016	+		DZA65_RS18330	0.12	-2.9
3,954,041	+		DZA65_RS18330	0.13	+0.3
3,954,041	+		DZA65_RS18330	0.13	-0.9
3,954,041	+		DZA65_RS18330	0.13	-1.4
3,954,041	+		DZA65_RS18330	0.13	-1.4
3,954,041	+		DZA65_RS18330	0.13	-0.6
3,954,042	-		DZA65_RS18330	0.13	-0.5
3,954,042	-		DZA65_RS18330	0.13	-1.0
3,954,042	-		DZA65_RS18330	0.13	+0.1
3,954,042	-		DZA65_RS18330	0.13	+0.6
3,954,042	-		DZA65_RS18330	0.13	+0.3
3,954,075	+		DZA65_RS18330	0.15	-0.6
3,954,075	+		DZA65_RS18330	0.15	+2.6
3,954,075	+		DZA65_RS18330	0.15	-0.5
3,954,076	-		DZA65_RS18330	0.15	+0.6
3,954,076	-		DZA65_RS18330	0.15	+0.6
3,954,076	-		DZA65_RS18330	0.15	+0.7
3,954,076	-		DZA65_RS18330	0.15	+0.2
3,954,076	-		DZA65_RS18330	0.15	+0.2
3,954,086	+		DZA65_RS18330	0.16	+1.6
3,954,086	+		DZA65_RS18330	0.16	+0.1
3,954,110	+		DZA65_RS18330	0.17	-0.9
3,954,111	-		DZA65_RS18330	0.17	+0.2
3,954,146	+		DZA65_RS18330	0.19	+0.4
3,954,158	+		DZA65_RS18330	0.19	-0.2
3,954,158	+		DZA65_RS18330	0.19	-0.3
3,954,158	+		DZA65_RS18330	0.19	+0.4
3,954,158	+		DZA65_RS18330	0.19	-0.7
3,954,158	+		DZA65_RS18330	0.19	-0.6
3,954,158	+		DZA65_RS18330	0.19	-1.6
3,954,194	+		DZA65_RS18330	0.21	+0.3
3,954,194	+		DZA65_RS18330	0.21	+0.7
3,954,196	+		DZA65_RS18330	0.21	+1.1
3,954,196	+		DZA65_RS18330	0.21	+1.0
3,954,196	+		DZA65_RS18330	0.21	+0.8
3,954,196	+		DZA65_RS18330	0.21	-0.3
3,954,196	+		DZA65_RS18330	0.21	+0.7
3,954,197	-		DZA65_RS18330	0.21	-1.5
3,954,197	-		DZA65_RS18330	0.21	+0.4
3,954,241	+		DZA65_RS18330	0.24	-0.3
3,954,248	+		DZA65_RS18330	0.24	-1.1
3,954,249	-				+1.1
3,954,249	-		DZA65_RS18330	0.24	+0.0
3,954,249	-		DZA65_RS18330	0.24	+1.7
3,954,249	-		DZA65_RS18330	0.24	+0.6