Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17690

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,807,776	+		DZA65_RS17680	0.42	-0.3
3,807,777	-		DZA65_RS17680	0.43	-0.8
3,807,777	-		DZA65_RS17680	0.43	+1.6
3,807,825	-		DZA65_RS17680	0.47	-0.7
3,807,825	-		DZA65_RS17680	0.47	+0.7
3,807,825	-		DZA65_RS17680	0.47	-0.5
3,807,870	+		DZA65_RS17680	0.51	-0.4
3,807,870	+		DZA65_RS17680	0.51	-0.2
3,807,871	-		DZA65_RS17680	0.51	-0.7
3,807,871	-		DZA65_RS17680	0.51	-2.6
3,807,871	-		DZA65_RS17680	0.51	+1.1
3,807,871	-		DZA65_RS17680	0.51	-1.4
3,807,871	-		DZA65_RS17680	0.51	-0.4
3,807,977	-		DZA65_RS17680	0.61	+1.0
3,807,978	+		DZA65_RS17680	0.61	+1.2
3,807,978	+		DZA65_RS17680	0.61	+0.8
3,807,978	+		DZA65_RS17680	0.61	+0.6
3,807,978	+		DZA65_RS17680	0.61	-0.3
3,807,979	-		DZA65_RS17680	0.61	-1.7
3,807,979	-		DZA65_RS17680	0.61	-1.2
3,807,979	-		DZA65_RS17680	0.61	+1.1
3,807,979	-		DZA65_RS17680	0.61	+0.6
3,807,979	-		DZA65_RS17680	0.61	-0.0
3,808,105	+		DZA65_RS17680	0.73	+1.1
3,808,105	+		DZA65_RS17680	0.73	-0.7
3,808,132	+		DZA65_RS17680	0.76	+1.3
3,808,132	+		DZA65_RS17680	0.76	-0.4
3,808,135	-		DZA65_RS17680	0.76	-1.0
3,808,150	+		DZA65_RS17680	0.77	+0.9
3,808,151	-		DZA65_RS17680	0.77	-1.7
3,808,180	-		DZA65_RS17680	0.80	+0.1
3,808,248	-		DZA65_RS17680	0.86	+0.6
3,808,368	+				-0.3
3,808,369	-				+0.2
3,808,369	-				-1.0
3,808,369	-				-1.7
3,808,369	-				-0.3
3,808,370	+				+0.5
3,808,370	+				+0.6
3,808,370	+				-0.7
3,808,370	+				-0.3
3,808,370	+				-1.4
3,808,371	-				+0.9
3,808,371	-				-0.6
3,808,371	-				+0.1
3,808,371	-				+1.2
3,808,386	+				-0.2
3,808,387	-				+2.0
3,808,407	-				-0.2
3,808,444	+				-0.4
3,808,444	+				+0.6
3,808,444	+				-0.4
3,808,444	+				-0.1
3,808,444	+				+0.8
3,808,444	+				+1.3
3,808,445	-				-0.0
3,808,445	-				-0.6
3,808,445	-				+2.2
3,808,446	+				+0.2
3,808,446	+				+0.2
3,808,447	-				-1.1
3,808,447	-				+0.3
3,808,447	-				+0.9
3,808,454	+				+0.2
3,808,455	-				-0.6
3,808,466	+				-2.0
3,808,467	-				+0.7
3,808,469	+				-0.8
3,808,476	-				+1.2
3,808,487	+				+1.1
3,808,487	+				+0.6
3,808,487	+				+2.2
3,808,487	+				+0.3
3,808,487	+				-0.4
3,808,488	-				-0.1
3,808,488	-				-0.6
3,808,488	-				-1.7
3,808,488	-				-0.6
3,808,503	+		DZA65_RS17685	0.16	+0.2
3,808,504	-		DZA65_RS17685	0.17	-0.4
3,808,516	+		DZA65_RS17685	0.33	-0.9
3,808,516	+		DZA65_RS17685	0.33	+0.0
3,808,530	+		DZA65_RS17685	0.51	+0.9
3,808,547	-		DZA65_RS17685	0.74	+1.9
3,808,547	-		DZA65_RS17685	0.74	-1.6
3,808,558	+		DZA65_RS17685	0.88	+0.6
3,808,558	+		DZA65_RS17685	0.88	-2.0
3,808,558	+		DZA65_RS17685	0.88	-0.0
3,808,558	+		DZA65_RS17685	0.88	+1.0
3,808,558	+		DZA65_RS17685	0.88	+0.4
3,808,558	+		DZA65_RS17685	0.88	-2.2
3,808,558	+		DZA65_RS17685	0.88	+0.3
3,808,558	+		DZA65_RS17685	0.88	-1.0
3,808,559	-				+1.2
3,808,559	-				-1.7
3,808,559	-				+0.3
3,808,559	-				-1.2
3,808,559	-				-2.0
3,808,559	-				+0.8
3,808,559	-				-0.1
3,808,559	-				+0.2
3,808,560	+				-0.2
3,808,617	-				-1.4
3,808,619	+				+0.7
3,808,619	+				-0.2
3,808,620	-				+0.7
3,808,620	-				+1.6
3,808,620	-				-0.7
3,808,651	+				-1.7
3,808,651	+				-1.4
3,808,651	+				-0.1
3,808,651	+				+1.6
3,808,652	-				-1.7
3,808,762	-				-0.4
3,808,762	-				-1.4
3,808,858	+		DZA65_RS17690	0.11	+0.9
3,808,881	+		DZA65_RS17690	0.13	+0.6
3,808,881	+		DZA65_RS17690	0.13	-0.2
3,808,881	+		DZA65_RS17690	0.13	-0.7
3,808,881	+		DZA65_RS17690	0.13	-0.9
3,808,882	-		DZA65_RS17690	0.13	-0.4
3,808,928	+		DZA65_RS17690	0.17	+0.2
3,809,000	-		DZA65_RS17690	0.22	-1.9
3,809,000	-		DZA65_RS17690	0.22	+0.1
3,809,000	-		DZA65_RS17690	0.22	-1.0
3,809,050	-		DZA65_RS17690	0.26	-0.9
3,809,050	-		DZA65_RS17690	0.26	-1.4
3,809,102	+		DZA65_RS17690	0.30	-1.1
3,809,147	-		DZA65_RS17690	0.34	-2.4
3,809,292	+		DZA65_RS17690	0.46	-1.0
3,809,292	+		DZA65_RS17690	0.46	-1.2
3,809,292	+		DZA65_RS17690	0.46	-1.0
3,809,292	+				+0.6
3,809,292	+		DZA65_RS17690	0.46	-1.4
3,809,292	+		DZA65_RS17690	0.46	-0.7
3,809,292	+		DZA65_RS17690	0.46	+2.0
3,809,292	+		DZA65_RS17690	0.46	-0.2
3,809,292	+		DZA65_RS17690	0.46	-0.0
3,809,292	+		DZA65_RS17690	0.46	-0.7
3,809,292	+		DZA65_RS17690	0.46	-2.2
3,809,292	+		DZA65_RS17690	0.46	-1.0
3,809,292	+		DZA65_RS17690	0.46	-2.4
3,809,292	+		DZA65_RS17690	0.46	-1.0
3,809,292	+		DZA65_RS17690	0.46	-0.4
3,809,292	+		DZA65_RS17690	0.46	-1.0
3,809,293	-		DZA65_RS17690	0.46	-1.7
3,809,293	-		DZA65_RS17690	0.46	-0.2
3,809,293	-		DZA65_RS17690	0.46	+0.6
3,809,293	-		DZA65_RS17690	0.46	+1.3
3,809,293	-		DZA65_RS17690	0.46	-1.5
3,809,293	-		DZA65_RS17690	0.46	-0.0
3,809,293	-		DZA65_RS17690	0.46	-2.0
3,809,293	-		DZA65_RS17690	0.46	+0.1
3,809,293	-		DZA65_RS17690	0.46	-0.4
3,809,293	-		DZA65_RS17690	0.46	+0.6
3,809,293	-		DZA65_RS17690	0.46	-1.0
3,809,293	-		DZA65_RS17690	0.46	-2.2
3,809,293	-		DZA65_RS17690	0.46	-0.0
3,809,293	-		DZA65_RS17690	0.46	+0.3
3,809,293	-		DZA65_RS17690	0.46	-1.5
3,809,293	-		DZA65_RS17690	0.46	-0.6
3,809,296	+		DZA65_RS17690	0.46	-0.7
3,809,296	+		DZA65_RS17690	0.46	-2.7
3,809,297	-		DZA65_RS17690	0.46	-2.0
3,809,297	-		DZA65_RS17690	0.46	-2.0
3,809,297	-		DZA65_RS17690	0.46	-0.7
3,809,297	-		DZA65_RS17690	0.46	-2.9
3,809,297	-		DZA65_RS17690	0.46	-0.3
3,809,297	-		DZA65_RS17690	0.46	+0.1
3,809,297	-		DZA65_RS17690	0.46	-0.7
3,809,297	-		DZA65_RS17690	0.46	-1.2
3,809,397	+		DZA65_RS17690	0.54	-0.6
3,809,397	+		DZA65_RS17690	0.54	-0.8
3,809,404	+		DZA65_RS17690	0.54	-0.5
3,809,404	+		DZA65_RS17690	0.54	-0.4
3,809,529	+		DZA65_RS17690	0.64	-0.4
3,809,530	-		DZA65_RS17690	0.65	-0.9
3,809,530	-		DZA65_RS17690	0.65	-1.4
3,809,539	+		DZA65_RS17690	0.65	-1.3
3,809,619	+		DZA65_RS17690	0.72	-1.2
3,809,619	+		DZA65_RS17690	0.72	-0.6
3,809,619	+		DZA65_RS17690	0.72	+1.0
3,809,619	+		DZA65_RS17690	0.72	-0.2
3,809,619	+		DZA65_RS17690	0.72	-1.6
3,809,620	-		DZA65_RS17690	0.72	-1.7
3,809,620	-		DZA65_RS17690	0.72	+0.3
3,809,620	-		DZA65_RS17690	0.72	-1.0
3,809,620	-		DZA65_RS17690	0.72	-1.2
3,809,935	-				-1.7
3,809,935	-				-2.2
3,809,935	-				-0.5
3,809,935	-				-0.2
3,809,935	-				-0.4
3,809,935	-				-0.7
3,809,956	+				-0.1
3,809,956	+				-1.7
3,809,956	+				-0.7
3,809,986	+				-0.7
3,809,986	+				-0.4
3,809,986	+				-0.6
3,809,987	-				-0.4
3,809,987	-				-1.0
3,809,987	-				-1.4
3,809,987	-				-0.4
3,809,987	-				-1.6
3,809,987	-				+0.5
3,809,987	-				-0.9
3,809,990	+				-1.5
3,809,990	+				+0.8
3,809,991	-				+0.8
3,809,991	-				-0.0
3,809,991	-				-0.4
3,809,991	-				-0.2
3,809,991	-				-0.6
3,810,098	+		DZA65_RS17695	0.10	+1.4
3,810,098	+		DZA65_RS17695	0.10	+0.7
3,810,101	-		DZA65_RS17695	0.11	-1.6
3,810,101	-		DZA65_RS17695	0.11	-0.9
3,810,174	-		DZA65_RS17695	0.17	-0.0
3,810,293	+		DZA65_RS17695	0.28	-1.9
3,810,351	-		DZA65_RS17695	0.33	+0.6
3,810,435	+		DZA65_RS17695	0.41	-2.0
3,810,436	-		DZA65_RS17695	0.41	+0.6
3,810,436	-		DZA65_RS17695	0.41	-0.0
3,810,689	+		DZA65_RS17695	0.64	-0.4
3,810,704	+		DZA65_RS17695	0.65	+0.6
3,810,705	-		DZA65_RS17695	0.65	-0.4
3,810,717	+		DZA65_RS17695	0.66	-1.9
3,810,718	-		DZA65_RS17695	0.66	-1.7
3,810,718	-		DZA65_RS17695	0.66	+0.2
3,810,718	-		DZA65_RS17695	0.66	-2.0
3,810,808	+		DZA65_RS17695	0.75	-0.0
3,810,809	-		DZA65_RS17695	0.75	-0.4
3,810,809	-		DZA65_RS17695	0.75	-1.0