Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS17240 and DZA65_RS17245 are separated by 52 nucleotides DZA65_RS17245 and DZA65_RS17250 are separated by 118 nucleotides DZA65_RS17250 and DZA65_RS17255 overlap by 47 nucleotides DZA65_RS17255 and DZA65_RS17260 are separated by 35 nucleotides DZA65_RS17260 and DZA65_RS17265 are separated by 46 nucleotides
DZA65_RS17240: DZA65_RS17240 - class 1b ribonucleoside-diphosphate reductase subunit beta, at 3,719,926 to 3,720,888
_RS17240
DZA65_RS17245: DZA65_RS17245 - tRNA-Asp, at 3,720,941 to 3,721,017
_RS17245
DZA65_RS17250: DZA65_RS17250 - DNA polymerase III subunit epsilon, at 3,721,136 to 3,721,870
_RS17250
DZA65_RS17255: DZA65_RS17255 - ribonuclease HI, at 3,721,824 to 3,722,390
_RS17255
DZA65_RS17260: DZA65_RS17260 - class I SAM-dependent methyltransferase, at 3,722,426 to 3,723,148
_RS17260
DZA65_RS17265: DZA65_RS17265 - hydroxyacylglutathione hydrolase, at 3,723,195 to 3,723,950
_RS17265
Position (kb) 3721
3722
3723 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.839 kb on - strand at 3720.839 kb on - strand at 3720.839 kb on - strand at 3720.839 kb on - strand at 3720.839 kb on - strand at 3720.996 kb on + strand, within DZA65_RS17245 at 3721.009 kb on + strand, within DZA65_RS17245 at 3721.032 kb on + strand at 3721.032 kb on + strand at 3721.032 kb on + strand at 3721.032 kb on + strand at 3721.032 kb on + strand at 3721.032 kb on + strand at 3721.032 kb on + strand at 3721.033 kb on - strand at 3721.033 kb on - strand at 3721.033 kb on - strand at 3721.033 kb on - strand at 3721.033 kb on - strand at 3721.067 kb on + strand at 3721.068 kb on - strand at 3721.091 kb on + strand at 3721.856 kb on - strand at 3721.882 kb on - strand, within DZA65_RS17255 at 3721.895 kb on - strand, within DZA65_RS17255 at 3721.910 kb on + strand, within DZA65_RS17255 at 3721.918 kb on + strand, within DZA65_RS17255 at 3721.919 kb on - strand, within DZA65_RS17255 at 3722.401 kb on - strand at 3722.440 kb on - strand at 3722.445 kb on + strand at 3722.446 kb on - strand at 3722.489 kb on + strand at 3722.490 kb on - strand at 3722.561 kb on + strand, within DZA65_RS17260 at 3722.562 kb on - strand, within DZA65_RS17260 at 3722.562 kb on - strand, within DZA65_RS17260 at 3722.562 kb on - strand, within DZA65_RS17260 at 3722.562 kb on - strand, within DZA65_RS17260 at 3722.575 kb on + strand, within DZA65_RS17260 at 3722.575 kb on + strand, within DZA65_RS17260 at 3722.575 kb on + strand, within DZA65_RS17260 at 3722.576 kb on - strand, within DZA65_RS17260 at 3722.576 kb on - strand, within DZA65_RS17260 at 3722.576 kb on - strand, within DZA65_RS17260 at 3722.576 kb on - strand, within DZA65_RS17260 at 3722.576 kb on - strand, within DZA65_RS17260 at 3722.629 kb on + strand, within DZA65_RS17260 at 3722.629 kb on + strand, within DZA65_RS17260 at 3722.629 kb on + strand, within DZA65_RS17260 at 3722.629 kb on + strand, within DZA65_RS17260 at 3722.629 kb on + strand, within DZA65_RS17260 at 3722.629 kb on + strand, within DZA65_RS17260 at 3722.630 kb on - strand, within DZA65_RS17260 at 3722.630 kb on - strand, within DZA65_RS17260 at 3722.630 kb on - strand, within DZA65_RS17260 at 3722.630 kb on - strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.646 kb on + strand, within DZA65_RS17260 at 3722.819 kb on + strand, within DZA65_RS17260 at 3722.819 kb on + strand, within DZA65_RS17260 at 3722.819 kb on + strand, within DZA65_RS17260 at 3722.820 kb on - strand, within DZA65_RS17260 at 3722.820 kb on - strand, within DZA65_RS17260 at 3722.820 kb on - strand, within DZA65_RS17260 at 3722.820 kb on - strand, within DZA65_RS17260 at 3722.820 kb on - strand, within DZA65_RS17260 at 3722.844 kb on + strand, within DZA65_RS17260 at 3722.844 kb on + strand, within DZA65_RS17260 at 3722.845 kb on - strand, within DZA65_RS17260 at 3722.845 kb on - strand, within DZA65_RS17260 at 3722.845 kb on - strand, within DZA65_RS17260 at 3722.845 kb on - strand, within DZA65_RS17260 at 3722.876 kb on + strand, within DZA65_RS17260 at 3722.877 kb on - strand, within DZA65_RS17260 at 3723.006 kb on - strand, within DZA65_RS17260 at 3723.006 kb on - strand, within DZA65_RS17260 at 3723.029 kb on + strand, within DZA65_RS17260 at 3723.029 kb on + strand, within DZA65_RS17260 at 3723.067 kb on + strand, within DZA65_RS17260 at 3723.075 kb on + strand, within DZA65_RS17260 at 3723.075 kb on + strand, within DZA65_RS17260 at 3723.075 kb on + strand, within DZA65_RS17260 at 3723.075 kb on + strand, within DZA65_RS17260 at 3723.075 kb on + strand, within DZA65_RS17260 at 3723.076 kb on - strand at 3723.076 kb on - strand at 3723.076 kb on - strand at 3723.076 kb on - strand at 3723.076 kb on - strand at 3723.076 kb on - strand at 3723.078 kb on + strand at 3723.078 kb on + strand at 3723.078 kb on + strand at 3723.079 kb on - strand at 3723.079 kb on - strand at 3723.079 kb on - strand at 3723.079 kb on - strand at 3723.079 kb on - strand at 3723.079 kb on - strand at 3723.079 kb on - strand at 3723.106 kb on + strand at 3723.106 kb on + strand at 3723.106 kb on + strand at 3723.106 kb on + strand at 3723.106 kb on + strand at 3723.107 kb on - strand at 3723.107 kb on - strand at 3723.107 kb on - strand at 3723.153 kb on + strand at 3723.153 kb on + strand at 3723.153 kb on + strand at 3723.153 kb on + strand at 3723.153 kb on + strand at 3723.154 kb on - strand at 3723.154 kb on - strand at 3723.154 kb on - strand at 3723.154 kb on - strand at 3723.154 kb on - strand at 3723.154 kb on - strand at 3723.154 kb on - strand at 3723.156 kb on + strand at 3723.157 kb on - strand at 3723.157 kb on - strand at 3723.170 kb on + strand at 3723.170 kb on + strand at 3723.194 kb on + strand at 3723.195 kb on - strand at 3723.203 kb on + strand at 3723.203 kb on + strand at 3723.203 kb on + strand at 3723.203 kb on + strand at 3723.203 kb on + strand at 3723.204 kb on - strand at 3723.204 kb on - strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.232 kb on - strand at 3723.232 kb on - strand at 3723.232 kb on - strand at 3723.232 kb on - strand at 3723.232 kb on - strand at 3723.232 kb on - strand at 3723.232 kb on - strand at 3723.338 kb on + strand, within DZA65_RS17265
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 3,720,838 + +0.5 3,720,838 + -2.3 3,720,838 + -0.2 3,720,838 + -0.7 3,720,838 + +0.3 3,720,838 + +0.5 3,720,838 + +0.9 3,720,838 + -0.3 3,720,839 - -2.0 3,720,839 - +0.2 3,720,839 - +2.1 3,720,839 - -0.5 3,720,839 - -0.0 3,720,996 + DZA65_RS17245 0.71 -0.7 3,721,009 + DZA65_RS17245 0.88 +0.1 3,721,032 + -1.5 3,721,032 + -0.5 3,721,032 + +0.5 3,721,032 + +0.9 3,721,032 + -1.0 3,721,032 + +0.5 3,721,032 + +1.7 3,721,033 - +0.5 3,721,033 - +0.3 3,721,033 - -2.6 3,721,033 - +0.3 3,721,033 - +0.1 3,721,067 + +0.5 3,721,068 - -0.4 3,721,091 + -1.8 3,721,856 - -1.6 3,721,882 - DZA65_RS17255 0.10 +0.4 3,721,895 - DZA65_RS17255 0.13 -1.2 3,721,910 + DZA65_RS17255 0.15 -1.9 3,721,918 + DZA65_RS17255 0.17 -1.8 3,721,919 - DZA65_RS17255 0.17 -1.5 3,722,401 - -0.3 3,722,440 - -0.6 3,722,445 + -2.1 3,722,446 - -0.6 3,722,489 + +1.1 3,722,490 - -0.5 3,722,561 + DZA65_RS17260 0.19 -0.2 3,722,562 - DZA65_RS17260 0.19 -1.5 3,722,562 - DZA65_RS17260 0.19 +0.7 3,722,562 - DZA65_RS17260 0.19 -1.5 3,722,562 - DZA65_RS17260 0.19 +0.5 3,722,575 + DZA65_RS17260 0.21 -0.3 3,722,575 + DZA65_RS17260 0.21 -0.4 3,722,575 + DZA65_RS17260 0.21 -0.5 3,722,576 - DZA65_RS17260 0.21 +0.9 3,722,576 - DZA65_RS17260 0.21 +0.1 3,722,576 - DZA65_RS17260 0.21 -0.4 3,722,576 - DZA65_RS17260 0.21 -1.2 3,722,576 - DZA65_RS17260 0.21 +0.8 3,722,629 + DZA65_RS17260 0.28 -0.4 3,722,629 + DZA65_RS17260 0.28 +0.1 3,722,629 + DZA65_RS17260 0.28 -0.3 3,722,629 + DZA65_RS17260 0.28 -0.2 3,722,629 + DZA65_RS17260 0.28 +0.7 3,722,629 + DZA65_RS17260 0.28 +2.2 3,722,630 - DZA65_RS17260 0.28 -1.6 3,722,630 - DZA65_RS17260 0.28 -1.2 3,722,630 - DZA65_RS17260 0.28 -2.0 3,722,630 - DZA65_RS17260 0.28 +1.8 3,722,634 + DZA65_RS17260 0.29 +0.2 3,722,634 + DZA65_RS17260 0.29 -0.8 3,722,634 + DZA65_RS17260 0.29 -0.2 3,722,634 + DZA65_RS17260 0.29 +0.1 3,722,634 + DZA65_RS17260 0.29 -1.3 3,722,634 + DZA65_RS17260 0.29 -0.1 3,722,634 + DZA65_RS17260 0.29 +0.8 3,722,634 + DZA65_RS17260 0.29 -0.2 3,722,634 + DZA65_RS17260 0.29 +1.3 3,722,635 - DZA65_RS17260 0.29 -0.9 3,722,635 - DZA65_RS17260 0.29 +1.2 3,722,635 - DZA65_RS17260 0.29 +0.1 3,722,635 - DZA65_RS17260 0.29 +0.8 3,722,635 - DZA65_RS17260 0.29 +0.2 3,722,635 - DZA65_RS17260 0.29 +0.3 3,722,635 - DZA65_RS17260 0.29 +1.0 3,722,635 - DZA65_RS17260 0.29 +0.8 3,722,635 - DZA65_RS17260 0.29 +0.0 3,722,635 - DZA65_RS17260 0.29 -0.5 3,722,635 - DZA65_RS17260 0.29 +0.0 3,722,635 - DZA65_RS17260 0.29 +1.1 3,722,635 - DZA65_RS17260 0.29 +0.1 3,722,635 - DZA65_RS17260 0.29 +0.1 3,722,638 + DZA65_RS17260 0.29 -0.7 3,722,638 + DZA65_RS17260 0.29 -0.5 3,722,638 + DZA65_RS17260 0.29 +0.4 3,722,638 + DZA65_RS17260 0.29 +0.5 3,722,638 + DZA65_RS17260 0.29 -0.2 3,722,638 + +2.1 3,722,638 + DZA65_RS17260 0.29 +0.1 3,722,638 + DZA65_RS17260 0.29 -0.7 3,722,638 + DZA65_RS17260 0.29 -1.1 3,722,638 + DZA65_RS17260 0.29 +0.4 3,722,638 + DZA65_RS17260 0.29 -2.3 3,722,638 + DZA65_RS17260 0.29 -0.7 3,722,638 + DZA65_RS17260 0.29 -1.0 3,722,638 + DZA65_RS17260 0.29 +1.7 3,722,638 + DZA65_RS17260 0.29 +0.5 3,722,639 - DZA65_RS17260 0.29 -0.5 3,722,639 - DZA65_RS17260 0.29 -1.0 3,722,639 - DZA65_RS17260 0.29 -0.5 3,722,639 - DZA65_RS17260 0.29 +0.9 3,722,639 - DZA65_RS17260 0.29 -2.0 3,722,639 - DZA65_RS17260 0.29 +0.5 3,722,639 - DZA65_RS17260 0.29 -2.0 3,722,646 + DZA65_RS17260 0.30 +0.8 3,722,819 + DZA65_RS17260 0.54 +0.4 3,722,819 + DZA65_RS17260 0.54 +1.2 3,722,819 + DZA65_RS17260 0.54 +0.3 3,722,820 - DZA65_RS17260 0.54 -0.7 3,722,820 - DZA65_RS17260 0.54 +0.3 3,722,820 - DZA65_RS17260 0.54 -1.3 3,722,820 - DZA65_RS17260 0.54 -1.3 3,722,820 - DZA65_RS17260 0.54 +0.2 3,722,844 + DZA65_RS17260 0.58 +0.2 3,722,844 + DZA65_RS17260 0.58 -0.7 3,722,845 - DZA65_RS17260 0.58 +0.7 3,722,845 - DZA65_RS17260 0.58 -0.8 3,722,845 - DZA65_RS17260 0.58 +2.1 3,722,845 - DZA65_RS17260 0.58 +0.9 3,722,876 + DZA65_RS17260 0.62 -1.4 3,722,877 - DZA65_RS17260 0.62 +0.5 3,723,006 - DZA65_RS17260 0.80 +0.2 3,723,006 - DZA65_RS17260 0.80 -1.8 3,723,029 + DZA65_RS17260 0.83 +0.1 3,723,029 + DZA65_RS17260 0.83 +1.4 3,723,067 + DZA65_RS17260 0.89 +1.3 3,723,075 + DZA65_RS17260 0.90 +1.2 3,723,075 + DZA65_RS17260 0.90 -1.0 3,723,075 + DZA65_RS17260 0.90 -2.6 3,723,075 + DZA65_RS17260 0.90 -0.3 3,723,075 + DZA65_RS17260 0.90 -1.8 3,723,076 - -0.4 3,723,076 - -0.8 3,723,076 - -0.1 3,723,076 - +1.9 3,723,076 - -0.8 3,723,076 - -2.0 3,723,078 + +0.7 3,723,078 + +1.3 3,723,078 + -1.0 3,723,079 - -0.1 3,723,079 - -0.6 3,723,079 - -0.0 3,723,079 - +0.3 3,723,079 - +0.1 3,723,079 - -0.5 3,723,079 - -0.2 3,723,106 + -0.5 3,723,106 + -2.5 3,723,106 + +1.5 3,723,106 + -0.5 3,723,106 + -2.5 3,723,107 - +0.5 3,723,107 - -0.9 3,723,107 - +1.6 3,723,153 + +0.0 3,723,153 + +0.2 3,723,153 + -1.6 3,723,153 + +0.4 3,723,153 + +1.0 3,723,154 - +0.2 3,723,154 - +3.8 3,723,154 - -2.6 3,723,154 - -0.9 3,723,154 - -1.7 3,723,154 - -0.5 3,723,154 - -0.3 3,723,156 + -0.2 3,723,157 - -0.5 3,723,157 - +2.1 3,723,170 + -1.0 3,723,170 + -2.8 3,723,194 + +1.6 3,723,195 - +1.2 3,723,203 + -2.0 3,723,203 + -1.6 3,723,203 + +0.2 3,723,203 + -1.5 3,723,203 + -1.0 3,723,204 - +0.1 3,723,204 - -0.0 3,723,231 + -3.0 3,723,231 + -1.3 3,723,231 + +0.1 3,723,231 + +0.5 3,723,231 + -1.4 3,723,231 + -0.5 3,723,231 + +0.1 3,723,231 + -0.8 3,723,232 - -0.2 3,723,232 - +0.7 3,723,232 - +0.9 3,723,232 - -0.1 3,723,232 - +0.1 3,723,232 - +0.5 3,723,232 - -0.2 3,723,338 + DZA65_RS17265 0.19 +0.3
Or see this region's nucleotide sequence