Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16735

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,608,833	-				+0.1
3,608,844	-				-0.1
3,608,852	-				-1.8
3,608,855	-				+0.6
3,608,855	-				+0.1
3,608,867	-				-0.0
3,608,883	-				+0.6
3,608,883	-				+1.2
3,608,883	-				-0.5
3,608,883	-				-0.8
3,608,883	-				-0.2
3,608,883	-				-0.2
3,608,883	-				+0.0
3,608,883	-				+0.6
3,608,883	-				+1.5
3,608,883	-				-1.1
3,608,883	-				-0.0
3,608,883	-				-0.3
3,608,883	-				+0.9
3,608,883	-				-0.4
3,608,883	-				-1.1
3,608,887	-				-2.5
3,608,887	-				-1.2
3,608,887	-				-0.1
3,608,887	-				+0.2
3,608,887	-				-1.9
3,608,887	-				-0.6
3,608,887	-				-0.2
3,608,887	-				-0.7
3,608,887	-				-0.2
3,608,887	-				+1.8
3,608,887	-				-0.5
3,608,887	-				+2.2
3,608,887	-				-0.4
3,608,887	-				+0.0
3,608,929	+				-0.1
3,608,930	-				-1.5
3,608,955	-				+2.1
3,608,955	-				+1.1
3,608,955	-				+0.6
3,608,955	-				+0.5
3,609,021	+				-1.4
3,609,021	+				-1.4
3,609,021	+				+0.5
3,609,022	-				-0.7
3,609,143	+		DZA65_RS16730	0.25	+0.5
3,609,144	-		DZA65_RS16730	0.26	-0.3
3,609,239	+		DZA65_RS16730	0.38	+0.1
3,609,240	-		DZA65_RS16730	0.38	-1.5
3,609,240	-		DZA65_RS16730	0.38	+0.5
3,609,281	+		DZA65_RS16730	0.44	-1.1
3,609,281	+		DZA65_RS16730	0.44	+0.8
3,609,311	+		DZA65_RS16730	0.48	-1.7
3,609,311	+		DZA65_RS16730	0.48	-0.2
3,609,311	+		DZA65_RS16730	0.48	+0.3
3,609,312	-		DZA65_RS16730	0.48	+1.0
3,609,312	-		DZA65_RS16730	0.48	-1.5
3,609,531	+		DZA65_RS16730	0.77	+1.1
3,609,531	+		DZA65_RS16730	0.77	+0.3
3,609,532	-		DZA65_RS16730	0.78	+0.3
3,609,658	-				+0.6
3,609,658	-				+0.1
3,609,685	+				-1.0
3,609,685	+				+0.5
3,609,685	+				+0.2
3,609,686	-				+0.1
3,609,686	-				+1.3
3,609,686	-				-0.1
3,609,687	+				+0.7
3,609,687	+				+0.3
3,609,687	+				+0.9
3,609,687	+				-1.4
3,609,687	+				+1.2
3,609,688	-				-0.7
3,609,711	+				+1.9
3,609,711	+				-0.1
3,609,711	+				+0.1
3,609,711	+				-1.3
3,609,711	+				-1.1
3,609,711	+				-0.5
3,609,711	+				-0.3
3,609,711	+				+0.5
3,609,711	+				+1.3
3,609,711	+				-0.4
3,609,712	-				+1.5
3,609,712	-				+0.5
3,609,712	-				-0.5
3,609,712	-				+0.5
3,609,712	-				-1.1
3,609,713	+				-0.4
3,609,713	+				-2.1
3,609,713	+				+2.1
3,609,713	+				-0.1
3,609,713	+				-0.0
3,609,714	-				+1.2
3,609,714	-				-0.5
3,609,714	-				+0.5
3,609,714	-				+0.0
3,609,714	-				+0.3
3,609,714	-				+0.5
3,609,732	+				+0.6
3,609,732	+				+0.6
3,609,733	-				+1.9
3,609,737	+				-0.3
3,609,738	-				+0.5
3,609,738	-				-0.8
3,609,738	-				+2.0
3,609,771	+				-0.5
3,609,771	+				+0.7
3,609,772	-				+0.0
3,609,778	+				+0.0
3,609,778	+				-0.5
3,609,778	+				+0.4
3,609,780	+				-0.2
3,609,780	+				+0.2
3,610,062	-				-1.1
3,610,670	-				+0.8
3,610,679	+				-0.7
3,610,775	+				+0.2
3,610,775	+				-0.8
3,610,776	-				+0.1
3,610,779	+				+0.9
3,610,780	-				-0.1
3,610,828	-				+1.1
3,610,882	-				-1.1
3,610,911	+		DZA65_RS16740	0.11	-0.5
3,610,912	-		DZA65_RS16740	0.11	+1.3
3,610,912	-		DZA65_RS16740	0.11	-1.5
3,610,953	+		DZA65_RS16740	0.14	+0.1
3,611,117	+		DZA65_RS16740	0.29	-0.9
3,611,117	+		DZA65_RS16740	0.29	-0.0
3,611,117	+		DZA65_RS16740	0.29	-2.5
3,611,117	+		DZA65_RS16740	0.29	+0.1
3,611,118	-		DZA65_RS16740	0.29	+2.0
3,611,332	+		DZA65_RS16740	0.48	-0.3
3,611,332	+		DZA65_RS16740	0.48	-1.1
3,611,333	-		DZA65_RS16740	0.48	+0.5
3,611,333	-		DZA65_RS16740	0.48	+1.5
3,611,333	-		DZA65_RS16740	0.48	+2.5
3,611,333	-		DZA65_RS16740	0.48	-1.3
3,611,355	+		DZA65_RS16740	0.50	-0.7
3,611,355	+		DZA65_RS16740	0.50	+0.9
3,611,355	+		DZA65_RS16740	0.50	-1.7
3,611,355	+		DZA65_RS16740	0.50	+0.2
3,611,356	-		DZA65_RS16740	0.50	+0.8
3,611,356	-		DZA65_RS16740	0.50	+0.4
3,611,356	-		DZA65_RS16740	0.50	-0.9
3,611,356	-		DZA65_RS16740	0.50	+0.8
3,611,418	+		DZA65_RS16740	0.56	+0.4
3,611,419	-		DZA65_RS16740	0.56	-0.5
3,611,502	+		DZA65_RS16740	0.63	-2.6
3,611,574	+		DZA65_RS16740	0.70	+0.5
3,611,578	+		DZA65_RS16740	0.70	+0.5
3,611,578	+		DZA65_RS16740	0.70	+1.0
3,611,578	+		DZA65_RS16740	0.70	-1.1
3,611,578	+		DZA65_RS16740	0.70	+0.5
3,611,578	+		DZA65_RS16740	0.70	+0.9
3,611,578	+		DZA65_RS16740	0.70	-2.5
3,611,578	+		DZA65_RS16740	0.70	+1.3
3,611,578	+		DZA65_RS16740	0.70	+2.5
3,611,578	+		DZA65_RS16740	0.70	+1.0
3,611,578	+		DZA65_RS16740	0.70	-0.5
3,611,578	+		DZA65_RS16740	0.70	+1.3
3,611,578	+		DZA65_RS16740	0.70	+0.1
3,611,578	+		DZA65_RS16740	0.70	-0.8
3,611,578	+		DZA65_RS16740	0.70	+1.1
3,611,578	+		DZA65_RS16740	0.70	-1.8
3,611,578	+		DZA65_RS16740	0.70	-0.3
3,611,578	+		DZA65_RS16740	0.70	-0.2
3,611,578	+		DZA65_RS16740	0.70	+0.1
3,611,578	+		DZA65_RS16740	0.70	+1.7
3,611,578	+				-1.5
3,611,578	+		DZA65_RS16740	0.70	-0.2
3,611,579	-		DZA65_RS16740	0.70	-2.1
3,611,579	-		DZA65_RS16740	0.70	-0.9
3,611,579	-		DZA65_RS16740	0.70	+0.5
3,611,579	-		DZA65_RS16740	0.70	+0.2
3,611,579	-		DZA65_RS16740	0.70	+2.8
3,611,579	-		DZA65_RS16740	0.70	-1.8
3,611,579	-		DZA65_RS16740	0.70	+1.5
3,611,579	-		DZA65_RS16740	0.70	-1.1
3,611,579	-		DZA65_RS16740	0.70	+0.1
3,611,579	-		DZA65_RS16740	0.70	+0.5
3,611,579	-		DZA65_RS16740	0.70	+0.1
3,611,579	-		DZA65_RS16740	0.70	+0.7
3,611,579	-		DZA65_RS16740	0.70	+1.1