Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15820

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,434,683	+		DZA65_RS15815	0.48	-0.0
3,434,696	+		DZA65_RS15815	0.49	-0.4
3,434,747	+		DZA65_RS15815	0.54	+0.2
3,434,747	+		DZA65_RS15815	0.54	+0.0
3,434,748	-		DZA65_RS15815	0.54	-1.0
3,434,779	+		DZA65_RS15815	0.57	+0.4
3,434,779	+		DZA65_RS15815	0.57	+0.4
3,434,779	+		DZA65_RS15815	0.57	+0.1
3,434,780	-		DZA65_RS15815	0.57	+0.5
3,434,829	+		DZA65_RS15815	0.62	-0.6
3,434,829	+		DZA65_RS15815	0.62	+1.1
3,434,829	+		DZA65_RS15815	0.62	-0.1
3,434,829	+		DZA65_RS15815	0.62	+0.9
3,434,829	+		DZA65_RS15815	0.62	+1.1
3,434,829	+		DZA65_RS15815	0.62	-0.3
3,434,829	+		DZA65_RS15815	0.62	-1.1
3,434,830	-		DZA65_RS15815	0.62	+0.4
3,434,830	-		DZA65_RS15815	0.62	+0.7
3,434,830	-		DZA65_RS15815	0.62	-0.5
3,434,833	+		DZA65_RS15815	0.62	+0.8
3,434,833	+		DZA65_RS15815	0.62	-0.5
3,434,833	+		DZA65_RS15815	0.62	+0.4
3,434,833	+		DZA65_RS15815	0.62	+0.0
3,434,833	+		DZA65_RS15815	0.62	+0.3
3,434,834	-		DZA65_RS15815	0.62	-0.2
3,434,834	-		DZA65_RS15815	0.62	+0.6
3,434,893	+		DZA65_RS15815	0.68	-1.9
3,434,918	-		DZA65_RS15815	0.71	+0.6
3,435,014	-		DZA65_RS15815	0.80	-0.9
3,435,032	-		DZA65_RS15815	0.82	+0.4
3,435,032	-		DZA65_RS15815	0.82	+1.4
3,435,059	-		DZA65_RS15815	0.84	+0.1
3,435,161	-				+0.7
3,435,162	+				-0.1
3,435,196	-				+0.3
3,435,196	-				+1.1
3,435,198	+				+0.4
3,435,199	-				+1.4
3,435,199	-				+0.4
3,435,199	-				+1.0
3,435,199	-				+0.9
3,435,202	-				-1.1
3,435,216	-				-1.6
3,435,235	+				+1.0
3,435,240	+				-0.7
3,435,240	+				+0.6
3,435,240	+				+1.5
3,435,240	+				-0.1
3,435,241	-				+2.4
3,435,334	+				-0.1
3,435,335	-				-0.1
3,435,337	-				+0.4
3,435,337	-				-0.1
3,435,370	+				+1.8
3,435,370	+				+0.9
3,435,407	-				-1.6
3,435,423	-				+0.4
3,435,461	+				-1.1
3,435,462	-				+0.8
3,435,462	-				+0.3
3,435,472	+				+0.7
3,435,497	-				+1.3
3,435,499	+				+0.1
3,435,500	-				+1.7
3,435,527	+				-0.6
3,435,560	+				-0.1
3,435,570	-				-0.1
3,435,614	+				+1.0
3,435,709	+				-0.4
3,435,709	+				-0.9
3,435,709	+				+0.4
3,435,776	+		DZA65_RS15820	0.13	-0.5
3,435,777	-		DZA65_RS15820	0.13	-0.3
3,435,792	+		DZA65_RS15820	0.14	-0.4
3,435,792	+		DZA65_RS15820	0.14	+0.4
3,435,808	+		DZA65_RS15820	0.15	-0.6
3,435,808	+		DZA65_RS15820	0.15	+0.2
3,435,809	-		DZA65_RS15820	0.16	+1.0
3,435,809	-		DZA65_RS15820	0.16	-0.6
3,435,882	+		DZA65_RS15820	0.21	-1.3
3,435,883	-		DZA65_RS15820	0.21	+0.2
3,435,886	-		DZA65_RS15820	0.21	-0.9
3,435,886	-		DZA65_RS15820	0.21	+1.0
3,435,886	-		DZA65_RS15820	0.21	-1.9
3,435,886	-		DZA65_RS15820	0.21	+0.8
3,435,886	-		DZA65_RS15820	0.21	-0.7
3,435,886	-		DZA65_RS15820	0.21	+1.1
3,435,886	-		DZA65_RS15820	0.21	+1.0
3,435,886	-		DZA65_RS15820	0.21	+0.2
3,435,888	+		DZA65_RS15820	0.21	+0.7
3,435,889	-		DZA65_RS15820	0.21	+1.1
3,435,889	-		DZA65_RS15820	0.21	-0.9
3,435,889	-		DZA65_RS15820	0.21	-0.6
3,435,889	-		DZA65_RS15820	0.21	-0.1
3,435,889	-		DZA65_RS15820	0.21	+1.6
3,435,929	+		DZA65_RS15820	0.24	+0.2
3,435,930	-		DZA65_RS15820	0.24	-0.3
3,435,937	+		DZA65_RS15820	0.25	-0.9
3,435,937	+		DZA65_RS15820	0.25	-1.9
3,435,937	+		DZA65_RS15820	0.25	-0.6
3,435,937	+		DZA65_RS15820	0.25	-0.6
3,435,937	+		DZA65_RS15820	0.25	-0.7
3,435,938	-		DZA65_RS15820	0.25	-2.9
3,435,938	-		DZA65_RS15820	0.25	-2.7
3,435,938	-		DZA65_RS15820	0.25	+0.9
3,435,938	-		DZA65_RS15820	0.25	-0.6
3,435,938	-		DZA65_RS15820	0.25	+0.8
3,435,938	-		DZA65_RS15820	0.25	+0.2
3,435,938	-		DZA65_RS15820	0.25	+1.1
3,435,938	-		DZA65_RS15820	0.25	+0.4
3,435,987	+		DZA65_RS15820	0.28	-1.0
3,435,988	-		DZA65_RS15820	0.28	+0.4
3,436,045	+		DZA65_RS15820	0.32	-1.8
3,436,046	-		DZA65_RS15820	0.32	-1.1
3,436,046	-		DZA65_RS15820	0.32	-1.6
3,436,046	-		DZA65_RS15820	0.32	-1.6
3,436,059	+		DZA65_RS15820	0.33	+0.2
3,436,060	-		DZA65_RS15820	0.33	-0.0
3,436,060	-		DZA65_RS15820	0.33	+0.4
3,436,089	+		DZA65_RS15820	0.35	-0.5
3,436,236	+		DZA65_RS15820	0.46	-0.3
3,436,297	-		DZA65_RS15820	0.50	+1.0
3,436,345	-		DZA65_RS15820	0.54	-0.6
3,436,370	+		DZA65_RS15820	0.55	-0.1
3,436,371	-		DZA65_RS15820	0.55	-0.6
3,436,479	-		DZA65_RS15820	0.63	-2.7
3,436,479	-		DZA65_RS15820	0.63	-1.9
3,436,490	+		DZA65_RS15820	0.64	-0.4
3,436,491	-		DZA65_RS15820	0.64	+0.7
3,436,500	+		DZA65_RS15820	0.64	-0.4
3,436,553	-		DZA65_RS15820	0.68	+0.3
3,436,553	-		DZA65_RS15820	0.68	-0.5
3,436,554	+		DZA65_RS15820	0.68	+0.6
3,436,557	+		DZA65_RS15820	0.69	-0.3
3,436,561	-		DZA65_RS15820	0.69	+0.1
3,436,653	+		DZA65_RS15820	0.75	+0.4
3,436,654	-		DZA65_RS15820	0.75	-0.9
3,436,663	-		DZA65_RS15820	0.76	-0.0
3,436,787	+		DZA65_RS15820	0.85	-1.8
3,436,788	-		DZA65_RS15820	0.85	+0.6
3,436,816	-		DZA65_RS15820	0.87	+0.7
3,436,818	+		DZA65_RS15820	0.87	-1.4
3,436,818	+		DZA65_RS15820	0.87	+0.7
3,436,818	+		DZA65_RS15820	0.87	+0.4
3,436,818	+		DZA65_RS15820	0.87	-0.8
3,436,819	-		DZA65_RS15820	0.87	+0.6
3,436,819	-		DZA65_RS15820	0.87	-0.6
3,436,819	-		DZA65_RS15820	0.87	+0.8
3,436,819	-		DZA65_RS15820	0.87	-0.1
3,436,819	-				-0.6
3,436,854	-		DZA65_RS15820	0.90	+0.2
3,436,854	-		DZA65_RS15820	0.90	-0.3
3,436,861	+				-0.6
3,436,861	+				+1.3
3,436,862	-				+0.4
3,436,862	-				-0.2
3,436,862	-				-1.6
3,436,862	-				+0.7
3,436,862	-				-2.4
3,436,862	-				-0.0
3,436,968	+				+1.1
3,436,969	-				-1.0
3,436,988	-				+0.3
3,437,041	+				-2.6
3,437,041	+				+1.2
3,437,041	+				-0.4
3,437,041	+				+0.6
3,437,041	+				-1.1
3,437,042	-				-0.4
3,437,042	-				+0.3
3,437,042	-				+0.8
3,437,042	-				-0.3
3,437,136	-				-0.9
3,437,164	+				+0.4
3,437,164	+				-1.0
3,437,190	+				-0.1
3,437,190	+				+1.4
3,437,190	+				+0.1
3,437,190	+				+0.2
3,437,190	+				+0.4
3,437,190	+				+0.5
3,437,190	+				-0.7
3,437,190	+				-0.6
3,437,191	-				-0.3
3,437,191	-				-0.9
3,437,191	-				+1.1
3,437,191	-				+0.6
3,437,191	-				+0.4
3,437,191	-				-0.7
3,437,191	-				-0.1
3,437,191	-				-2.1
3,437,191	-				+0.3
3,437,210	+				+0.5
3,437,210	+				+0.1
3,437,210	+				-0.5
3,437,210	+				-0.8
3,437,211	-				+0.3
3,437,211	-				+0.4
3,437,214	+				-0.1
3,437,214	+				-0.6
3,437,214	+				-3.1
3,437,214	+				+0.4
3,437,215	-				+1.4
3,437,215	-				+0.1
3,437,215	-				-1.6
3,437,215	-				+0.4
3,437,215	-				-0.6
3,437,215	-				-0.5
3,437,233	+				-0.2
3,437,233	+				-1.4
3,437,237	+				-0.3
3,437,237	+				-0.4
3,437,237	+				-0.3
3,437,237	+				-1.0
3,437,237	+				+1.6
3,437,237	+				+0.0
3,437,237	+				+1.1
3,437,238	-				+1.4
3,437,238	-				+0.2
3,437,238	-				+0.1
3,437,297	+				+0.4
3,437,297	+				+0.1
3,437,304	+		DZA65_RS15825	0.11	+1.0
3,437,305	-		DZA65_RS15825	0.11	-1.0
3,437,510	-		DZA65_RS15825	0.40	-0.4
3,437,555	+		DZA65_RS15825	0.46	+2.8
3,437,555	+		DZA65_RS15825	0.46	-1.0
3,437,555	+		DZA65_RS15825	0.46	-0.9
3,437,555	+		DZA65_RS15825	0.46	+0.2
3,437,556	-		DZA65_RS15825	0.47	-1.1
3,437,556	-		DZA65_RS15825	0.47	-0.6
3,437,631	+		DZA65_RS15825	0.57	+1.4
3,437,631	+		DZA65_RS15825	0.57	+0.2
3,437,631	+		DZA65_RS15825	0.57	+0.8
3,437,631	+		DZA65_RS15825	0.57	-1.2
3,437,631	+		DZA65_RS15825	0.57	+0.3
3,437,632	-		DZA65_RS15825	0.57	+0.2
3,437,632	-		DZA65_RS15825	0.57	-0.7
3,437,632	-		DZA65_RS15825	0.57	-1.0
3,437,682	+		DZA65_RS15825	0.64	+0.1
3,437,798	+		DZA65_RS15825	0.81	+0.8
3,437,798	+		DZA65_RS15825	0.81	+1.1
3,437,798	+		DZA65_RS15825	0.81	-1.1
3,437,798	+		DZA65_RS15825	0.81	+0.6
3,437,798	+		DZA65_RS15825	0.81	-1.1
3,437,798	+		DZA65_RS15825	0.81	-1.4
3,437,799	-		DZA65_RS15825	0.81	+0.7
3,437,799	-		DZA65_RS15825	0.81	+0.7
3,437,799	-		DZA65_RS15825	0.81	+0.4
3,437,799	-		DZA65_RS15825	0.81	-0.6
3,437,799	-		DZA65_RS15825	0.81	-0.2
3,437,799	-		DZA65_RS15825	0.81	+0.4
3,437,799	-		DZA65_RS15825	0.81	+1.0
3,437,799	-		DZA65_RS15825	0.81	-1.7
3,437,799	-		DZA65_RS15825	0.81	+1.8
3,437,817	+		DZA65_RS15825	0.84	-0.6
3,437,930	+				-1.6
3,437,931	-				+1.1