Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15715

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,411,989	+				+0.2
3,411,990	-				-1.9
3,412,018	+				+0.3
3,412,018	+				-1.2
3,412,018	+				-2.4
3,412,019	-				+0.2
3,412,019	-				-0.5
3,412,019	-				+0.4
3,412,019	-				+1.2
3,412,019	-				-0.3
3,412,019	-				+0.1
3,412,033	+				-0.7
3,412,034	-				+0.8
3,412,099	+		DZA65_RS15710	0.11	+1.0
3,412,099	+		DZA65_RS15710	0.11	-1.9
3,412,099	+		DZA65_RS15710	0.11	+1.1
3,412,216	-		DZA65_RS15710	0.25	-0.3
3,412,216	-		DZA65_RS15710	0.25	-1.4
3,412,216	-		DZA65_RS15710	0.25	+0.4
3,412,216	-		DZA65_RS15710	0.25	-0.1
3,412,216	-		DZA65_RS15710	0.25	+0.6
3,412,216	-		DZA65_RS15710	0.25	+1.0
3,412,271	-		DZA65_RS15710	0.31	-0.1
3,412,281	+		DZA65_RS15710	0.32	-0.5
3,412,486	+		DZA65_RS15710	0.56	-1.6
3,412,486	+		DZA65_RS15710	0.56	-0.1
3,412,521	-		DZA65_RS15710	0.60	+0.8
3,412,564	+		DZA65_RS15710	0.65	-0.9
3,412,564	+		DZA65_RS15710	0.65	+0.1
3,412,564	+		DZA65_RS15710	0.65	+1.6
3,412,564	+		DZA65_RS15710	0.65	-1.6
3,412,564	+		DZA65_RS15710	0.65	-0.8
3,412,565	-		DZA65_RS15710	0.65	-1.3
3,412,565	-		DZA65_RS15710	0.65	+0.4
3,412,565	-		DZA65_RS15710	0.65	-0.9
3,412,565	-		DZA65_RS15710	0.65	+0.2
3,412,565	-		DZA65_RS15710	0.65	+0.1
3,412,584	+		DZA65_RS15710	0.67	-0.1
3,412,676	+		DZA65_RS15710	0.78	+0.2
3,412,724	+		DZA65_RS15710	0.84	+0.8
3,412,724	+		DZA65_RS15710	0.84	+0.4
3,412,724	+		DZA65_RS15710	0.84	-0.5
3,412,725	-		DZA65_RS15710	0.84	-1.9
3,412,725	-		DZA65_RS15710	0.84	-1.2
3,412,725	-		DZA65_RS15710	0.84	-1.6
3,412,725	-		DZA65_RS15710	0.84	-1.9
3,412,725	-		DZA65_RS15710	0.84	-0.1
3,412,725	-		DZA65_RS15710	0.84	-0.2
3,412,725	-		DZA65_RS15710	0.84	+2.0
3,412,725	-		DZA65_RS15710	0.84	+0.2
3,412,785	-				+0.4
3,412,831	+				-0.4
3,412,831	+				-0.6
3,412,831	+				+1.9
3,412,831	+				+1.5
3,412,831	+				-0.6
3,412,831	+				-2.9
3,412,831	+				-0.3
3,412,831	+				+0.2
3,412,831	+				-0.2
3,412,831	+				+2.5
3,412,831	+				+0.4
3,412,832	-				-0.2
3,412,832	-				-0.7
3,412,832	-				-0.8
3,412,832	-				+1.1
3,412,832	-				+0.7
3,412,832	-				-0.9
3,412,920	+				-1.0
3,412,920	+				-0.3
3,412,920	+				+0.6
3,412,921	-				-0.8
3,412,921	-				-1.3
3,412,921	-				-1.0
3,412,921	-				-0.6
3,412,921	-				+0.6
3,412,921	-				-1.0
3,412,931	+				-2.2
3,412,934	+				+0.0
3,412,934	+				-0.6
3,412,934	+				-0.1
3,412,934	+				-0.4
3,412,935	-				+0.9
3,412,935	-				+0.9
3,412,935	-				+0.2
3,412,935	-				-1.2
3,412,935	-				-0.9
3,412,935	-				-0.9
3,412,935	-				-0.3
3,412,941	-				-1.6
3,412,952	+				+1.4
3,412,955	+				+0.7
3,412,955	+				-1.2
3,412,955	+				+0.9
3,412,955	+				-1.4
3,412,955	+				-0.3
3,412,955	+				+0.8
3,412,955	+				-1.6
3,412,955	+				-0.5
3,412,955	+				+1.3
3,412,955	+				+0.0
3,412,955	+				+1.5
3,412,955	+				+0.9
3,412,956	-				-1.5
3,412,956	-				-0.9
3,412,956	-				-0.3
3,412,956	-				-0.7
3,412,956	-				-1.9
3,412,956	-				+1.2
3,412,956	-				-1.7
3,412,956	-				+0.4
3,412,956	-				+0.2
3,412,956	-				-0.3
3,412,956	-				-0.5
3,412,956	-				+1.8
3,412,956	-				-1.2
3,412,956	-				+1.0
3,412,956	-				-0.1
3,412,983	+				-0.9
3,412,984	-				+1.2
3,413,068	+				+0.7
3,413,068	+				+0.4
3,413,068	+				+0.5
3,413,144	+				-0.7
3,413,144	+				-1.3
3,413,144	+				+1.2
3,413,144	+				-1.4
3,413,144	+				-0.9
3,413,144	+				+0.6
3,413,144	+				-0.4
3,413,144	+				-0.9
3,413,144	+				+0.4
3,413,145	-				-0.1
3,413,145	-				+0.1
3,413,145	-				+0.1
3,413,145	-				+1.3
3,413,145	-				+1.0
3,413,145	-				-1.6
3,413,145	-				-1.4
3,413,145	-				+0.6
3,413,145	-				-0.1
3,413,145	-				-0.9
3,413,145	-				-0.3
3,413,145	-				-0.3
3,413,145	-				-0.3
3,413,145	-				+1.3
3,413,148	+				-0.4
3,413,148	+				-2.4
3,413,149	-				-0.8
3,413,149	-				+0.0
3,413,241	+		DZA65_RS15715	0.11	+1.0
3,413,242	-		DZA65_RS15715	0.11	-0.7
3,413,281	+		DZA65_RS15715	0.12	-0.7
3,413,335	+		DZA65_RS15715	0.14	-2.5
3,413,336	-		DZA65_RS15715	0.14	+0.6
3,413,336	-		DZA65_RS15715	0.14	-0.8
3,413,360	-		DZA65_RS15715	0.15	-0.3
3,413,386	+		DZA65_RS15715	0.17	+2.0
3,413,386	+		DZA65_RS15715	0.17	+0.0
3,413,386	+		DZA65_RS15715	0.17	-1.3
3,413,386	+		DZA65_RS15715	0.17	+1.0
3,413,386	+		DZA65_RS15715	0.17	+0.1
3,413,387	-		DZA65_RS15715	0.17	+0.6
3,413,387	-		DZA65_RS15715	0.17	-0.9
3,413,516	-				-1.2
3,413,516	-		DZA65_RS15715	0.22	-0.6
3,413,626	+		DZA65_RS15715	0.26	-0.1
3,413,626	+		DZA65_RS15715	0.26	-0.8
3,413,626	+		DZA65_RS15715	0.26	-0.3
3,413,637	+		DZA65_RS15715	0.27	-0.3
3,413,637	+		DZA65_RS15715	0.27	+0.0
3,413,652	+		DZA65_RS15715	0.27	+0.1
3,413,652	+		DZA65_RS15715	0.27	-0.1
3,413,652	+		DZA65_RS15715	0.27	-0.1
3,413,653	-		DZA65_RS15715	0.27	-0.4
3,413,692	+		DZA65_RS15715	0.29	+0.5
3,413,693	-		DZA65_RS15715	0.29	-1.0
3,413,693	-		DZA65_RS15715	0.29	-0.2
3,413,743	+		DZA65_RS15715	0.31	-0.2
3,413,743	+		DZA65_RS15715	0.31	-1.0
3,413,743	+		DZA65_RS15715	0.31	-1.5
3,413,743	+		DZA65_RS15715	0.31	-1.0
3,413,745	+		DZA65_RS15715	0.31	+0.7
3,413,745	+		DZA65_RS15715	0.31	-0.4
3,413,745	+		DZA65_RS15715	0.31	-1.6
3,413,745	+		DZA65_RS15715	0.31	+0.2
3,413,745	+		DZA65_RS15715	0.31	+0.2
3,413,745	+		DZA65_RS15715	0.31	+0.7
3,413,746	-		DZA65_RS15715	0.31	-1.0
3,413,746	-		DZA65_RS15715	0.31	-1.4
3,413,746	-		DZA65_RS15715	0.31	-2.2
3,413,746	-		DZA65_RS15715	0.31	-0.7
3,413,778	-		DZA65_RS15715	0.33	+0.9
3,414,024	-		DZA65_RS15715	0.43	+0.5
3,414,024	-		DZA65_RS15715	0.43	+0.3
3,414,024	-		DZA65_RS15715	0.43	+1.0
3,414,044	+		DZA65_RS15715	0.43	+0.0
3,414,045	-		DZA65_RS15715	0.43	-0.8
3,414,063	+				+0.4
3,414,063	+		DZA65_RS15715	0.44	-0.4
3,414,063	+		DZA65_RS15715	0.44	-1.2
3,414,063	+		DZA65_RS15715	0.44	+0.2
3,414,064	-		DZA65_RS15715	0.44	-1.0
3,414,064	-		DZA65_RS15715	0.44	+2.2
3,414,064	-		DZA65_RS15715	0.44	+1.0
3,414,064	-		DZA65_RS15715	0.44	+1.0
3,414,064	-		DZA65_RS15715	0.44	+0.8
3,414,102	+		DZA65_RS15715	0.46	-0.5
3,414,102	+		DZA65_RS15715	0.46	+0.4
3,414,103	-		DZA65_RS15715	0.46	-1.3
3,414,103	-		DZA65_RS15715	0.46	+1.0
3,414,103	-		DZA65_RS15715	0.46	+1.2
3,414,103	-		DZA65_RS15715	0.46	+0.1
3,414,103	-		DZA65_RS15715	0.46	-0.3
3,414,127	+		DZA65_RS15715	0.47	+1.2
3,414,128	-		DZA65_RS15715	0.47	-0.4
3,414,128	-		DZA65_RS15715	0.47	-0.1
3,414,129	+		DZA65_RS15715	0.47	-1.6
3,414,129	+		DZA65_RS15715	0.47	-1.0
3,414,130	-		DZA65_RS15715	0.47	-0.8
3,414,238	+		DZA65_RS15715	0.51	+1.4
3,414,238	+		DZA65_RS15715	0.51	-1.6
3,414,239	-		DZA65_RS15715	0.51	+2.1
3,414,239	-		DZA65_RS15715	0.51	-0.8
3,414,239	-		DZA65_RS15715	0.51	-0.6
3,414,353	-		DZA65_RS15715	0.56	-0.4
3,414,353	-		DZA65_RS15715	0.56	+2.2
3,414,437	-		DZA65_RS15715	0.60	-0.9
3,414,588	+		DZA65_RS15715	0.66	-0.6
3,414,588	+		DZA65_RS15715	0.66	-0.1
3,414,588	+		DZA65_RS15715	0.66	-2.2
3,414,588	+		DZA65_RS15715	0.66	-0.7
3,414,588	+		DZA65_RS15715	0.66	-0.6
3,414,588	+		DZA65_RS15715	0.66	+0.8
3,414,588	+		DZA65_RS15715	0.66	+0.6
3,414,588	+		DZA65_RS15715	0.66	-0.6
3,414,588	+		DZA65_RS15715	0.66	+0.8
3,414,589	-		DZA65_RS15715	0.66	-0.3
3,414,589	-		DZA65_RS15715	0.66	+1.6
3,414,589	-		DZA65_RS15715	0.66	-2.3
3,414,589	-		DZA65_RS15715	0.66	+0.4
3,414,589	-		DZA65_RS15715	0.66	+0.4
3,414,589	-		DZA65_RS15715	0.66	-0.8
3,414,589	-		DZA65_RS15715	0.66	-0.6
3,414,589	-		DZA65_RS15715	0.66	-0.2
3,414,589	-		DZA65_RS15715	0.66	-0.7
3,414,589	-		DZA65_RS15715	0.66	-0.8
3,414,589	-		DZA65_RS15715	0.66	-1.0
3,414,589	-		DZA65_RS15715	0.66	-0.8
3,414,589	-		DZA65_RS15715	0.66	-0.7
3,414,708	+		DZA65_RS15715	0.71	+0.9
3,414,708	+		DZA65_RS15715	0.71	-0.1
3,414,708	+		DZA65_RS15715	0.71	-1.5
3,414,708	+		DZA65_RS15715	0.71	+0.4
3,414,708	+		DZA65_RS15715	0.71	-1.9
3,414,708	+		DZA65_RS15715	0.71	-2.7
3,414,709	-				-0.6
3,414,709	-		DZA65_RS15715	0.71	+1.5
3,414,709	-		DZA65_RS15715	0.71	+0.3
3,414,709	-		DZA65_RS15715	0.71	-1.6
3,414,709	-		DZA65_RS15715	0.71	-2.7
3,414,709	-		DZA65_RS15715	0.71	-0.4
3,414,719	+		DZA65_RS15715	0.71	-0.9
3,414,719	+		DZA65_RS15715	0.71	-0.8
3,414,719	+		DZA65_RS15715	0.71	+0.1
3,414,719	+		DZA65_RS15715	0.71	-1.6
3,414,719	+		DZA65_RS15715	0.71	+1.8
3,414,850	+		DZA65_RS15715	0.76	+0.6
3,414,850	+		DZA65_RS15715	0.76	-0.2
3,414,850	+		DZA65_RS15715	0.76	+0.7
3,414,851	-		DZA65_RS15715	0.76	-0.6
3,414,871	+		DZA65_RS15715	0.77	-1.6
3,414,901	+		DZA65_RS15715	0.78	-0.7
3,414,901	+		DZA65_RS15715	0.78	-0.7
3,414,901	+		DZA65_RS15715	0.78	-0.9
3,414,902	-		DZA65_RS15715	0.79	+0.1
3,414,902	-		DZA65_RS15715	0.79	-2.4
3,414,902	-		DZA65_RS15715	0.79	-0.8
3,414,902	-		DZA65_RS15715	0.79	-0.6
3,415,054	+		DZA65_RS15715	0.85	+0.7
3,415,055	-		DZA65_RS15715	0.85	-0.4
3,415,112	+		DZA65_RS15715	0.87	+0.2
3,415,112	+		DZA65_RS15715	0.87	-1.6
3,415,112	+		DZA65_RS15715	0.87	-1.1
3,415,112	+		DZA65_RS15715	0.87	+2.1
3,415,113	-		DZA65_RS15715	0.87	+0.6
3,415,113	-		DZA65_RS15715	0.87	-0.7
3,415,130	+		DZA65_RS15715	0.88	+0.8
3,415,130	+		DZA65_RS15715	0.88	+0.8
3,415,130	+		DZA65_RS15715	0.88	-1.6
3,415,195	+				+0.4
3,415,195	+				-0.2
3,415,196	-				+0.2
3,415,196	-				+1.1
3,415,196	-				+4.7
3,415,196	-				+1.4
3,415,198	+				+0.7
3,415,198	+				-0.9
3,415,199	-				-0.1
3,415,208	+				+1.7
3,415,208	+				+0.8
3,415,208	+				-0.4
3,415,208	+				-0.6
3,415,209	-				+0.1
3,415,354	+				-0.9
3,415,355	-				+2.2
3,415,355	-				+0.8
3,415,413	-				-1.0
3,415,421	-				-0.6
3,415,426	+				-0.7
3,415,426	+				-0.1
3,415,427	-				-0.7
3,415,427	-				+0.0
3,415,448	-				+1.9
3,415,488	+				-0.4
3,415,488	+				+0.2
3,415,489	-				-0.9
3,415,533	+				-0.2
3,415,534	-				+0.2
3,415,534	-				+0.2
3,415,536	+				+1.0
3,415,536	+				-0.6
3,415,536	+				+0.2
3,415,536	+				-1.8
3,415,536	+				+0.6
3,415,536	+				+0.4
3,415,537	-				-0.1
3,415,537	-				+2.0
3,415,537	-				+1.2
3,415,537	-				+1.2
3,415,537	-				+0.4
3,415,537	-				+2.4
3,415,537	-				+0.9
3,415,537	-				+3.2
3,415,537	-				-0.9
3,415,541	+				-0.2
3,415,541	+				+0.4
3,415,541	+				+0.3
3,415,542	-				+1.0
3,415,542	-				+0.7
3,415,542	-				+0.4
3,415,542	-				+0.1
3,415,557	+				-1.2
3,415,557	+				+0.8
3,415,557	+				+0.8
3,415,558	-				-0.2
3,415,573	-				+0.2
3,415,584	+				-2.0
3,415,585	-				+0.2
3,415,633	+				-2.2
3,415,645	-				-0.4
3,415,646	+				+0.4
3,415,720	+				-1.3
3,415,838	-				+0.2
3,415,887	+				-0.4
3,415,955	+				-2.4
3,415,969	-				+0.0
3,416,023	+				+0.7
3,416,023	+				+1.6
3,416,024	-				-1.3
3,416,024	-				+0.7
3,416,024	-				+0.4
3,416,046	+				+1.4
3,416,046	+				+0.4
3,416,046	+				+0.2
3,416,046	+				+1.2
3,416,046	+				-0.0
3,416,047	-				+0.7
3,416,047	-				-1.3
3,416,047	-				-0.4
3,416,047	-				-0.1
3,416,048	+				-0.4
3,416,048	+				-0.8
3,416,048	+				+0.1
3,416,048	+				+0.0
3,416,048	+				+0.1
3,416,048	+				-0.9
3,416,049	-				+2.0
3,416,049	-				-1.2
3,416,049	-				+0.4
3,416,049	-				+0.3
3,416,051	+				-0.4
3,416,051	+				-1.2
3,416,051	+				-2.2
3,416,051	+				+0.3
3,416,052	-				+0.4
3,416,052	-				-0.3
3,416,109	-		DZA65_RS15725	0.26	+1.1
3,416,109	-		DZA65_RS15725	0.26	-0.9
3,416,135	+				+0.8
3,416,135	+		DZA65_RS15725	0.41	-1.6
3,416,135	+		DZA65_RS15725	0.41	+1.4
3,416,135	+		DZA65_RS15725	0.41	-0.1
3,416,136	-		DZA65_RS15725	0.41	-0.8
3,416,136	-		DZA65_RS15725	0.41	+0.1
3,416,136	-		DZA65_RS15725	0.41	-1.2
3,416,136	-		DZA65_RS15725	0.41	-0.2
3,416,140	+		DZA65_RS15725	0.44	+0.0
3,416,197	+		DZA65_RS15725	0.76	-1.3
3,416,197	+		DZA65_RS15725	0.76	-0.6
3,416,197	+		DZA65_RS15725	0.76	+0.8
3,416,198	-		DZA65_RS15725	0.76	+0.0
3,416,214	+		DZA65_RS15725	0.85	+0.6
3,416,222	-				-1.3
3,416,229	+				-0.1
3,416,229	+				+0.3
3,416,237	+				+1.4
3,416,242	+				-0.2
3,416,242	+				+0.2
3,416,248	+				+0.4
3,416,251	+				-0.4
3,416,251	+				-0.2
3,416,251	+				-0.5
3,416,252	-		DZA65_RS15730	0.10	-1.4
3,416,252	-		DZA65_RS15730	0.10	-0.2
3,416,252	-		DZA65_RS15730	0.10	-1.3
3,416,252	-		DZA65_RS15730	0.10	+1.1
3,416,252	-		DZA65_RS15730	0.10	+0.2
3,416,252	-		DZA65_RS15730	0.10	+1.8
3,416,296	+		DZA65_RS15730	0.32	-0.2
3,416,297	-		DZA65_RS15730	0.32	-1.0
3,416,313	+		DZA65_RS15730	0.40	+0.3
3,416,313	+		DZA65_RS15730	0.40	+1.7
3,416,313	+		DZA65_RS15730	0.40	-2.9
3,416,313	+		DZA65_RS15730	0.40	+0.7
3,416,313	+		DZA65_RS15730	0.40	+0.8
3,416,314	-		DZA65_RS15730	0.41	-0.1
3,416,314	-		DZA65_RS15730	0.41	-0.2
3,416,314	-		DZA65_RS15730	0.41	-0.6
3,416,329	+		DZA65_RS15730	0.48	-0.8
3,416,330	-		DZA65_RS15730	0.49	+0.4
3,416,330	-		DZA65_RS15730	0.49	-0.2
3,416,330	-		DZA65_RS15730	0.49	-0.3
3,416,357	+		DZA65_RS15730	0.62	+0.8