Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15220

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,304,819	+		DZA65_RS15205	0.22	+0.4
3,304,826	+		DZA65_RS15205	0.24	+1.0
3,304,827	-		DZA65_RS15205	0.25	-2.3
3,304,827	-		DZA65_RS15205	0.25	-0.3
3,304,827	-		DZA65_RS15205	0.25	+1.1
3,304,873	+		DZA65_RS15205	0.38	+2.2
3,304,874	-		DZA65_RS15205	0.39	-0.1
3,304,874	-		DZA65_RS15205	0.39	-1.2
3,304,916	+		DZA65_RS15205	0.52	-0.4
3,304,981	+		DZA65_RS15205	0.71	-2.9
3,304,981	+		DZA65_RS15205	0.71	+0.9
3,304,981	+		DZA65_RS15205	0.71	-0.6
3,304,981	+		DZA65_RS15205	0.71	+0.9
3,304,981	+		DZA65_RS15205	0.71	-0.6
3,304,981	+		DZA65_RS15205	0.71	-3.2
3,304,981	+		DZA65_RS15205	0.71	-2.9
3,304,981	+		DZA65_RS15205	0.71	+0.2
3,304,981	+		DZA65_RS15205	0.71	+2.0
3,304,981	+		DZA65_RS15205	0.71	-0.7
3,304,981	+		DZA65_RS15205	0.71	+1.8
3,304,981	+		DZA65_RS15205	0.71	-1.0
3,304,981	+		DZA65_RS15205	0.71	-1.2
3,304,982	-		DZA65_RS15205	0.72	+0.2
3,304,982	-		DZA65_RS15205	0.72	-0.4
3,304,982	-		DZA65_RS15205	0.72	-0.3
3,304,982	-		DZA65_RS15205	0.72	-0.2
3,304,982	-		DZA65_RS15205	0.72	-0.3
3,304,982	-		DZA65_RS15205	0.72	+0.8
3,304,982	-		DZA65_RS15205	0.72	-0.3
3,305,018	+		DZA65_RS15205	0.82	-0.5
3,305,018	+		DZA65_RS15205	0.82	+0.2
3,305,018	+		DZA65_RS15205	0.82	-2.4
3,305,018	+		DZA65_RS15205	0.82	+0.7
3,305,018	+		DZA65_RS15205	0.82	+0.7
3,305,018	+		DZA65_RS15205	0.82	-1.6
3,305,019	-		DZA65_RS15205	0.83	+0.6
3,305,019	-		DZA65_RS15205	0.83	+0.0
3,305,019	-		DZA65_RS15205	0.83	-1.2
3,305,019	-		DZA65_RS15205	0.83	+0.4
3,305,020	+		DZA65_RS15205	0.83	+0.6
3,305,020	+		DZA65_RS15205	0.83	-0.9
3,305,020	+		DZA65_RS15205	0.83	+0.2
3,305,020	+		DZA65_RS15205	0.83	+2.5
3,305,020	+		DZA65_RS15205	0.83	-0.9
3,305,020	+		DZA65_RS15205	0.83	-0.6
3,305,020	+		DZA65_RS15205	0.83	+0.7
3,305,020	+		DZA65_RS15205	0.83	-1.2
3,305,021	-		DZA65_RS15205	0.83	-2.9
3,305,021	-		DZA65_RS15205	0.83	-0.4
3,305,021	-		DZA65_RS15205	0.83	-0.4
3,305,021	-		DZA65_RS15205	0.83	+0.4
3,305,069	+				-1.6
3,305,069	+				+0.0
3,305,070	-				+0.3
3,305,070	-				-0.9
3,305,076	+				-0.9
3,305,076	+				+1.8
3,305,077	-				+1.0
3,305,077	-				+0.3
3,305,096	+				-1.2
3,305,097	-				+1.6
3,305,281	+		DZA65_RS15210	0.45	+0.2
3,305,281	+		DZA65_RS15210	0.45	-0.1
3,305,281	+		DZA65_RS15210	0.45	+0.8
3,305,281	+		DZA65_RS15210	0.45	-0.7
3,305,281	+		DZA65_RS15210	0.45	-0.5
3,305,282	-		DZA65_RS15210	0.45	+1.4
3,305,395	+		DZA65_RS15210	0.69	+1.6
3,305,395	+		DZA65_RS15210	0.69	+0.2
3,305,395	+		DZA65_RS15210	0.69	-0.9
3,305,396	-		DZA65_RS15210	0.69	-0.6
3,305,396	-		DZA65_RS15210	0.69	-0.4
3,305,399	+		DZA65_RS15210	0.70	-1.4
3,305,399	+		DZA65_RS15210	0.70	-1.4
3,305,399	+		DZA65_RS15210	0.70	-0.6
3,305,399	+		DZA65_RS15210	0.70	+0.8
3,305,399	+		DZA65_RS15210	0.70	-0.3
3,305,399	+		DZA65_RS15210	0.70	+0.2
3,305,399	+		DZA65_RS15210	0.70	+0.4
3,305,399	+		DZA65_RS15210	0.70	-0.5
3,305,399	+		DZA65_RS15210	0.70	+0.5
3,305,399	+		DZA65_RS15210	0.70	-0.5
3,305,400	-		DZA65_RS15210	0.70	-0.2
3,305,400	-		DZA65_RS15210	0.70	+2.1
3,305,400	-		DZA65_RS15210	0.70	-1.8
3,305,400	-		DZA65_RS15210	0.70	+0.4
3,305,403	+		DZA65_RS15210	0.71	-0.3
3,305,404	-		DZA65_RS15210	0.71	+2.7
3,305,416	+		DZA65_RS15210	0.74	+1.7
3,305,417	-		DZA65_RS15210	0.74	+0.5
3,305,417	-		DZA65_RS15210	0.74	-0.6
3,305,417	-		DZA65_RS15210	0.74	+0.5
3,305,417	-		DZA65_RS15210	0.74	+0.9
3,305,460	+		DZA65_RS15210	0.83	+0.0
3,305,460	+		DZA65_RS15210	0.83	+1.2
3,305,491	+				-0.1
3,305,491	+				-0.2
3,305,492	-				-0.6
3,305,524	+				+0.0
3,305,525	-				+0.6
3,305,527	+				-0.8
3,305,528	-				-1.3
3,305,528	-				+0.4
3,305,554	+				+0.5
3,305,560	+				-0.3
3,305,561	-				-0.6
3,305,619	-				-1.2
3,305,655	-		DZA65_RS15215	0.20	+0.7
3,305,691	+		DZA65_RS15215	0.39	-1.1
3,305,756	+		DZA65_RS15215	0.72	-1.7
3,305,760	+		DZA65_RS15215	0.74	-0.2
3,305,760	+		DZA65_RS15215	0.74	+0.6
3,305,760	+		DZA65_RS15215	0.74	-0.3
3,305,760	+		DZA65_RS15215	0.74	+0.3
3,305,760	+		DZA65_RS15215	0.74	+1.4
3,305,760	+		DZA65_RS15215	0.74	-0.9
3,305,760	+		DZA65_RS15215	0.74	-0.2
3,305,760	+		DZA65_RS15215	0.74	+0.1
3,305,761	-		DZA65_RS15215	0.75	-2.8
3,305,780	+		DZA65_RS15215	0.85	-0.6
3,305,824	+				+0.5
3,305,871	+				+0.4
3,305,871	+				+1.2
3,305,871	+				+0.1
3,305,872	-				+0.8
3,305,883	+		DZA65_RS15220	0.11	-1.0
3,305,883	+		DZA65_RS15220	0.11	-0.8
3,305,884	-		DZA65_RS15220	0.12	+2.7
3,305,893	+		DZA65_RS15220	0.13	+0.4
3,305,956	+		DZA65_RS15220	0.23	+1.1
3,305,956	+		DZA65_RS15220	0.23	+1.4
3,305,956	+		DZA65_RS15220	0.23	+1.1
3,305,960	+		DZA65_RS15220	0.23	+0.7
3,305,960	+		DZA65_RS15220	0.23	-0.9
3,305,960	+		DZA65_RS15220	0.23	+0.4
3,305,960	+		DZA65_RS15220	0.23	+0.4
3,305,961	-		DZA65_RS15220	0.24	-0.6
3,305,961	-		DZA65_RS15220	0.24	-0.6
3,306,097	+		DZA65_RS15220	0.45	+0.7
3,306,156	+		DZA65_RS15220	0.54	+0.7
3,306,168	+		DZA65_RS15220	0.56	-1.1
3,306,168	+		DZA65_RS15220	0.56	-1.0
3,306,168	+		DZA65_RS15220	0.56	+0.0
3,306,168	+		DZA65_RS15220	0.56	+0.5
3,306,169	-		DZA65_RS15220	0.56	+1.5
3,306,174	+		DZA65_RS15220	0.57	+1.4
3,306,174	+		DZA65_RS15220	0.57	-0.1
3,306,174	+		DZA65_RS15220	0.57	+0.7
3,306,175	-		DZA65_RS15220	0.57	-2.2
3,306,175	-		DZA65_RS15220	0.57	+0.1
3,306,217	-		DZA65_RS15220	0.64	-1.4
3,306,217	-		DZA65_RS15220	0.64	+0.3
3,306,271	+		DZA65_RS15220	0.72	-0.1
3,306,271	+		DZA65_RS15220	0.72	+1.0
3,306,272	-		DZA65_RS15220	0.72	-0.8
3,306,355	+		DZA65_RS15220	0.85	-0.8
3,306,378	-		DZA65_RS15220	0.89	+0.4
3,306,433	+				+0.8
3,306,433	+				-0.0
3,306,434	-				+0.4
3,306,436	+				+0.2
3,306,436	+				+1.7
3,306,437	-				-0.0
3,306,437	-				+1.4
3,306,461	+		DZA65_RS15225	0.12	-1.2
3,306,470	+		DZA65_RS15225	0.16	+1.6
3,306,483	+		DZA65_RS15225	0.23	-0.6
3,306,483	+		DZA65_RS15225	0.23	+1.7
3,306,551	+		DZA65_RS15225	0.57	+0.7
3,306,551	+		DZA65_RS15225	0.57	+1.4
3,306,551	+		DZA65_RS15225	0.57	+0.4
3,306,551	+		DZA65_RS15225	0.57	-1.0
3,306,551	+		DZA65_RS15225	0.57	-0.2
3,306,611	+		DZA65_RS15225	0.87	+0.0
3,306,611	+		DZA65_RS15225	0.87	-0.0
3,306,614	+		DZA65_RS15225	0.89	+0.1
3,306,614	+		DZA65_RS15225	0.89	-0.2
3,306,624	+				-0.3
3,306,624	+				+2.2
3,306,629	+				+0.1
3,306,629	+				-0.3
3,306,654	+				-0.3
3,306,697	+		DZA65_RS15230	0.23	+0.3
3,306,844	+		DZA65_RS15230	0.86	-0.4
3,306,876	+				-0.3
3,306,876	+				-0.7
3,306,883	+				-0.6
3,306,883	+				+0.8
3,306,895	+				-1.0
3,306,895	+				-1.2
3,306,895	+				-1.2
3,307,020	+		DZA65_RS15235	0.15	-2.1
3,307,020	+		DZA65_RS15235	0.15	-2.4
3,307,020	+		DZA65_RS15235	0.15	+0.9
3,307,063	+				-0.6
3,307,063	+		DZA65_RS15235	0.19	-0.1
3,307,137	+		DZA65_RS15235	0.28	-0.6
3,307,147	+		DZA65_RS15235	0.29	-0.5
3,307,147	+		DZA65_RS15235	0.29	-0.3
3,307,147	+		DZA65_RS15235	0.29	+0.5
3,307,147	+		DZA65_RS15235	0.29	-3.1
3,307,147	+		DZA65_RS15235	0.29	+0.2
3,307,147	+		DZA65_RS15235	0.29	+0.7
3,307,147	+		DZA65_RS15235	0.29	-0.8
3,307,149	+		DZA65_RS15235	0.29	+0.2
3,307,318	+		DZA65_RS15235	0.48	-0.1
3,307,318	+		DZA65_RS15235	0.48	-0.2
3,307,342	+		DZA65_RS15235	0.51	+0.1