Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14905

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,247,237	+		DZA65_RS14900	0.12	+1.1
3,247,237	+		DZA65_RS14900	0.12	-0.5
3,247,238	-		DZA65_RS14900	0.12	+0.4
3,247,238	-		DZA65_RS14900	0.12	-1.3
3,247,238	-		DZA65_RS14900	0.12	-0.3
3,247,238	-		DZA65_RS14900	0.12	-0.0
3,247,253	+		DZA65_RS14900	0.13	-1.2
3,247,254	-		DZA65_RS14900	0.14	+1.4
3,247,254	-		DZA65_RS14900	0.14	-0.1
3,247,372	+		DZA65_RS14900	0.25	+1.2
3,247,372	+		DZA65_RS14900	0.25	-1.1
3,247,372	+		DZA65_RS14900	0.25	+1.9
3,247,372	+		DZA65_RS14900	0.25	-0.2
3,247,372	+		DZA65_RS14900	0.25	-0.2
3,247,373	-		DZA65_RS14900	0.25	-1.0
3,247,373	-		DZA65_RS14900	0.25	-1.6
3,247,373	-		DZA65_RS14900	0.25	-1.1
3,247,373	-		DZA65_RS14900	0.25	+0.1
3,247,373	-		DZA65_RS14900	0.25	-0.6
3,247,381	+		DZA65_RS14900	0.26	+0.1
3,247,381	+		DZA65_RS14900	0.26	-0.0
3,247,382	-		DZA65_RS14900	0.26	+1.9
3,247,402	+		DZA65_RS14900	0.28	+1.9
3,247,402	+		DZA65_RS14900	0.28	+0.0
3,247,402	+		DZA65_RS14900	0.28	+0.7
3,247,402	+		DZA65_RS14900	0.28	-0.3
3,247,402	+		DZA65_RS14900	0.28	-1.2
3,247,402	+				+1.1
3,247,402	+		DZA65_RS14900	0.28	-0.2
3,247,402	+		DZA65_RS14900	0.28	-2.6
3,247,402	+		DZA65_RS14900	0.28	-2.2
3,247,402	+		DZA65_RS14900	0.28	-1.0
3,247,402	+		DZA65_RS14900	0.28	+0.8
3,247,402	+		DZA65_RS14900	0.28	-0.3
3,247,403	-		DZA65_RS14900	0.28	+0.1
3,247,403	-		DZA65_RS14900	0.28	-0.8
3,247,403	-		DZA65_RS14900	0.28	+0.4
3,247,403	-		DZA65_RS14900	0.28	+0.0
3,247,403	-		DZA65_RS14900	0.28	-0.4
3,247,441	+		DZA65_RS14900	0.32	-1.2
3,247,441	+		DZA65_RS14900	0.32	-1.8
3,247,441	+		DZA65_RS14900	0.32	-0.1
3,247,441	+		DZA65_RS14900	0.32	+0.9
3,247,441	+		DZA65_RS14900	0.32	-0.0
3,247,441	+		DZA65_RS14900	0.32	-0.2
3,247,442	-		DZA65_RS14900	0.32	-1.8
3,247,442	-		DZA65_RS14900	0.32	-1.6
3,247,507	+		DZA65_RS14900	0.38	+0.5
3,247,508	-		DZA65_RS14900	0.39	-0.1
3,247,508	-		DZA65_RS14900	0.39	-1.2
3,247,627	+		DZA65_RS14900	0.50	+1.8
3,247,628	-		DZA65_RS14900	0.50	-2.0
3,247,628	-		DZA65_RS14900	0.50	-1.5
3,247,634	-		DZA65_RS14900	0.51	-1.6
3,247,634	-		DZA65_RS14900	0.51	+0.4
3,247,634	-		DZA65_RS14900	0.51	+2.4
3,247,634	-		DZA65_RS14900	0.51	-0.6
3,247,641	+		DZA65_RS14900	0.52	+0.2
3,247,641	+		DZA65_RS14900	0.52	+0.6
3,247,642	-		DZA65_RS14900	0.52	-0.8
3,247,669	+		DZA65_RS14900	0.54	-1.2
3,247,700	-		DZA65_RS14900	0.57	+0.6
3,247,763	+		DZA65_RS14900	0.64	-0.1
3,247,763	+		DZA65_RS14900	0.64	-1.8
3,247,764	-		DZA65_RS14900	0.64	+0.1
3,247,764	-		DZA65_RS14900	0.64	-0.4
3,247,764	-		DZA65_RS14900	0.64	+0.8
3,247,798	+		DZA65_RS14900	0.67	-0.4
3,247,799	-		DZA65_RS14900	0.67	-1.1
3,247,799	-		DZA65_RS14900	0.67	-2.0
3,247,799	-		DZA65_RS14900	0.67	-1.3
3,247,827	-		DZA65_RS14900	0.70	+1.4
3,247,851	+		DZA65_RS14900	0.72	-0.4
3,247,851	+		DZA65_RS14900	0.72	-1.4
3,248,011	+		DZA65_RS14900	0.88	+0.1
3,248,012	-		DZA65_RS14900	0.88	-0.2
3,248,012	-		DZA65_RS14900	0.88	-1.0
3,248,137	+				-0.4
3,248,335	-		DZA65_RS14905	0.18	+0.7
3,248,383	+		DZA65_RS14905	0.22	+0.8
3,248,384	-		DZA65_RS14905	0.22	+0.0
3,248,414	+		DZA65_RS14905	0.25	+0.4
3,248,459	-		DZA65_RS14905	0.29	+0.6
3,248,488	+		DZA65_RS14905	0.31	+0.4
3,248,488	+		DZA65_RS14905	0.31	-0.6
3,248,594	-		DZA65_RS14905	0.41	-0.4
3,248,603	+		DZA65_RS14905	0.41	+0.9
3,248,603	+		DZA65_RS14905	0.41	-0.5
3,248,603	+		DZA65_RS14905	0.41	+0.3
3,248,604	-		DZA65_RS14905	0.41	+0.5
3,248,604	-		DZA65_RS14905	0.41	+1.4
3,248,604	-		DZA65_RS14905	0.41	-1.0
3,248,604	-		DZA65_RS14905	0.41	-2.2
3,248,641	+		DZA65_RS14905	0.45	-1.6
3,248,641	+		DZA65_RS14905	0.45	+0.8
3,248,641	+		DZA65_RS14905	0.45	-0.4
3,248,641	+		DZA65_RS14905	0.45	-0.3
3,248,642	-		DZA65_RS14905	0.45	-1.4
3,248,642	-		DZA65_RS14905	0.45	+1.1
3,248,642	-		DZA65_RS14905	0.45	-0.6
3,248,702	+		DZA65_RS14905	0.50	+1.1
3,248,705	+		DZA65_RS14905	0.50	+0.8
3,248,705	+		DZA65_RS14905	0.50	-2.2
3,248,705	+		DZA65_RS14905	0.50	+0.8
3,248,705	+		DZA65_RS14905	0.50	+0.1
3,248,706	-		DZA65_RS14905	0.51	-0.2
3,248,706	-		DZA65_RS14905	0.51	-2.0
3,248,706	-		DZA65_RS14905	0.51	-0.4
3,248,706	-		DZA65_RS14905	0.51	-1.6
3,248,843	+		DZA65_RS14905	0.63	-1.0
3,248,843	+		DZA65_RS14905	0.63	-2.4
3,248,843	+		DZA65_RS14905	0.63	+0.4
3,248,844	-		DZA65_RS14905	0.63	+1.5
3,248,878	+		DZA65_RS14905	0.66	+1.1
3,248,883	-		DZA65_RS14905	0.66	+1.9
3,248,922	+		DZA65_RS14905	0.70	+0.6
3,248,926	+		DZA65_RS14905	0.70	+1.1
3,248,926	+		DZA65_RS14905	0.70	-0.1
3,248,926	+		DZA65_RS14905	0.70	+0.0
3,248,926	+		DZA65_RS14905	0.70	-0.4
3,248,930	+		DZA65_RS14905	0.70	-0.4
3,248,931	-		DZA65_RS14905	0.70	-0.1
3,248,931	-		DZA65_RS14905	0.70	+1.3
3,248,931	-		DZA65_RS14905	0.70	+0.4
3,248,938	+		DZA65_RS14905	0.71	+0.4
3,248,938	+		DZA65_RS14905	0.71	+0.1
3,249,007	+		DZA65_RS14905	0.77	+0.0
3,249,008	-		DZA65_RS14905	0.77	+0.7
3,249,020	+		DZA65_RS14905	0.78	+0.4
3,249,021	-		DZA65_RS14905	0.78	+1.9
3,249,021	-		DZA65_RS14905	0.78	+1.5
3,249,023	+		DZA65_RS14905	0.79	+0.7
3,249,023	+		DZA65_RS14905	0.79	+0.2
3,249,023	+		DZA65_RS14905	0.79	-0.1
3,249,023	+		DZA65_RS14905	0.79	-0.3
3,249,024	-		DZA65_RS14905	0.79	+0.5
3,249,201	+				+0.9
3,249,201	+				+0.1
3,249,201	+				-1.8
3,249,201	+				-0.8
3,249,201	+				+1.4
3,249,201	+				+0.9
3,249,201	+				+0.4
3,249,201	+				+1.7
3,249,202	-				+1.6
3,249,202	-				+0.1
3,249,202	-				-1.2
3,249,202	-				+0.6
3,249,202	-				-0.2
3,249,249	-				+0.5
3,249,249	-				-1.2
3,249,268	+				-0.4
3,249,272	-				+0.6
3,249,272	-				-0.6
3,249,272	-				+0.0
3,249,281	+				+0.1
3,249,295	+				+0.9
3,249,296	-				-0.9
3,249,296	-				+1.0
3,249,316	+				-1.6
3,249,321	+				-1.4
3,249,322	-				+1.5
3,249,322	-				-0.2
3,249,355	-				+0.5
3,249,382	-				-0.4
3,249,382	-				-0.6
3,249,525	+				-0.5
3,249,677	-				-0.8
3,249,863	-				+0.5
3,249,886	+				+0.7
3,249,886	+				+1.5
3,249,887	-				+1.1
3,249,895	+				-0.0
3,249,895	+				+0.6
3,249,896	-				+0.2
3,249,896	-				-1.1
3,249,896	-				+0.8
3,250,003	+				-0.2
3,250,003	+				-0.6
3,250,003	+				-0.1
3,250,004	-				+0.2
3,250,004	-				+0.6
3,250,004	-				+1.6
3,250,034	+		DZA65_RS14910	0.11	+0.4
3,250,034	+		DZA65_RS14910	0.11	+1.2
3,250,034	+		DZA65_RS14910	0.11	+0.3
3,250,035	-		DZA65_RS14910	0.11	+0.1
3,250,035	-		DZA65_RS14910	0.11	+0.3
3,250,035	-		DZA65_RS14910	0.11	-0.3
3,250,035	-		DZA65_RS14910	0.11	-0.2
3,250,035	-		DZA65_RS14910	0.11	+0.4