Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13750

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,947,772	+		DZA65_RS13745	0.22	-0.4
2,947,772	+		DZA65_RS13745	0.22	-0.2
2,947,877	-		DZA65_RS13745	0.34	-1.1
2,947,901	+		DZA65_RS13745	0.36	-1.0
2,947,902	-		DZA65_RS13745	0.36	-0.6
2,947,910	+		DZA65_RS13745	0.37	-1.3
2,947,910	+		DZA65_RS13745	0.37	-0.4
2,947,911	-		DZA65_RS13745	0.37	-0.0
2,947,943	-		DZA65_RS13745	0.41	-1.5
2,947,943	-		DZA65_RS13745	0.41	+0.5
2,948,039	+		DZA65_RS13745	0.51	-1.5
2,948,040	-		DZA65_RS13745	0.51	-1.7
2,948,040	-		DZA65_RS13745	0.51	-0.2
2,948,040	-		DZA65_RS13745	0.51	-0.3
2,948,040	-		DZA65_RS13745	0.51	-0.4
2,948,111	-		DZA65_RS13745	0.59	-0.0
2,948,155	-		DZA65_RS13745	0.64	-0.1
2,948,172	+		DZA65_RS13745	0.66	-0.1
2,948,172	+		DZA65_RS13745	0.66	+0.4
2,948,172	+		DZA65_RS13745	0.66	+0.2
2,948,186	+		DZA65_RS13745	0.67	-0.4
2,948,241	+		DZA65_RS13745	0.73	+1.9
2,948,241	+		DZA65_RS13745	0.73	-0.2
2,948,241	+		DZA65_RS13745	0.73	-3.4
2,948,241	+		DZA65_RS13745	0.73	+0.4
2,948,241	+		DZA65_RS13745	0.73	-2.7
2,948,241	+		DZA65_RS13745	0.73	-0.1
2,948,241	+		DZA65_RS13745	0.73	+0.6
2,948,241	+		DZA65_RS13745	0.73	-0.4
2,948,241	+		DZA65_RS13745	0.73	+0.4
2,948,241	+		DZA65_RS13745	0.73	-0.7
2,948,242	-		DZA65_RS13745	0.73	-0.9
2,948,242	-		DZA65_RS13745	0.73	+0.3
2,948,242	-		DZA65_RS13745	0.73	-0.7
2,948,242	-		DZA65_RS13745	0.73	-0.7
2,948,242	-		DZA65_RS13745	0.73	+1.0
2,948,242	-		DZA65_RS13745	0.73	+1.3
2,948,243	+		DZA65_RS13745	0.74	-0.4
2,948,243	+		DZA65_RS13745	0.74	-0.7
2,948,243	+		DZA65_RS13745	0.74	+0.8
2,948,243	+		DZA65_RS13745	0.74	-0.4
2,948,243	+		DZA65_RS13745	0.74	+0.0
2,948,243	+		DZA65_RS13745	0.74	-2.5
2,948,243	+		DZA65_RS13745	0.74	+0.8
2,948,243	+		DZA65_RS13745	0.74	+0.3
2,948,244	-		DZA65_RS13745	0.74	-0.9
2,948,244	-		DZA65_RS13745	0.74	+2.0
2,948,244	-		DZA65_RS13745	0.74	+0.5
2,948,244	-		DZA65_RS13745	0.74	-1.7
2,948,244	-		DZA65_RS13745	0.74	+0.4
2,948,244	-		DZA65_RS13745	0.74	-0.0
2,948,244	-		DZA65_RS13745	0.74	+1.4
2,948,313	+		DZA65_RS13745	0.81	+2.9
2,948,325	-				-0.1
2,948,345	+		DZA65_RS13745	0.85	+0.9
2,948,427	+				-0.7
2,948,427	+				+0.1
2,948,427	+				+0.3
2,948,427	+				-0.1
2,948,427	+				+1.9
2,948,427	+				+1.7
2,948,427	+				+1.0
2,948,427	+				-0.4
2,948,428	-				-0.3
2,948,428	-				+0.4
2,948,428	-				-1.2
2,948,428	-				-0.8
2,948,428	-				-0.7
2,948,428	-				-0.9
2,948,428	-				-0.7
2,948,428	-				-0.5
2,948,429	+				-1.4
2,948,429	+				+0.1
2,948,429	+				-0.1
2,948,429	+				-0.3
2,948,429	+				+0.3
2,948,429	+				-0.9
2,948,429	+				-2.0
2,948,429	+				-0.0
2,948,429	+				-0.6
2,948,429	+				+1.3
2,948,429	+				+0.9
2,948,429	+				+0.1
2,948,429	+				-0.9
2,948,429	+				-0.0
2,948,429	+				+1.1
2,948,429	+				-0.7
2,948,429	+				-1.7
2,948,429	+				+0.9
2,948,429	+				+0.5
2,948,429	+				+0.1
2,948,429	+				-2.0
2,948,429	+				-2.0
2,948,429	+				+0.1
2,948,429	+				-0.4
2,948,430	-				+0.9
2,948,430	-				-0.9
2,948,430	-				-0.1
2,948,430	-				+0.1
2,948,430	-				-1.0
2,948,430	-				+0.8
2,948,430	-				-0.3
2,948,430	-				-1.7
2,948,430	-				+1.3
2,948,430	-				-0.7
2,948,430	-				-0.4
2,948,430	-				-1.3
2,948,430	-				+1.0
2,948,430	-				+1.7
2,948,430	-				-3.2
2,948,430	-				-0.6
2,948,430	-				-0.3
2,948,430	-				-0.5
2,948,430	-				+2.0
2,948,430	-				-1.3
2,948,430	-				+0.4
2,948,430	-				-0.4
2,948,481	+				-0.6
2,948,481	+				-2.5
2,948,482	-				+0.8
2,948,482	-				+1.3
2,948,482	-				-0.3
2,948,484	+				+0.3
2,948,484	+				-3.4
2,948,484	+				-0.3
2,948,484	+				-1.2
2,948,485	-				-0.1
2,948,485	-				-0.7
2,948,507	+				+1.1
2,948,507	+				-0.9
2,948,507	+				+2.0
2,948,508	-				-3.0
2,948,508	-				-1.6
2,948,508	-				-0.1
2,948,508	-				-2.0
2,948,517	+				-0.1
2,948,518	-				-0.9
2,948,518	-				-1.3
2,948,564	+				+0.3
2,948,565	-				+0.5
2,948,566	+				-0.4
2,948,566	+				-0.5
2,948,566	+				-0.1
2,948,566	+				+0.9
2,948,566	+				-0.3
2,948,566	+				+0.5
2,948,566	+				-3.2
2,948,566	+				+0.7
2,948,567	-				-0.3
2,948,567	-				+2.4
2,948,567	-				+1.4
2,948,567	-				+0.6
2,948,567	-				+1.0
2,948,567	-				-1.0
2,948,568	+				-1.3
2,948,568	+				+1.1
2,948,568	+				+0.2
2,948,568	+				+0.4
2,948,568	+				+0.8
2,948,569	-				-1.3
2,948,569	-				-0.6
2,948,569	-				-0.0
2,948,569	-				+0.1
2,948,569	-				+1.0
2,948,569	-				-2.3
2,948,569	-				-1.7
2,948,569	-				-0.2
2,948,597	+				+0.5
2,948,598	-				-2.0
2,948,598	-				-0.1
2,948,658	-				+0.7
2,948,658	-				+0.9
2,948,716	-				+0.1
2,948,716	-				-0.5
2,948,833	+				-0.7
2,948,954	-				-3.0
2,949,039	+		DZA65_RS13750	0.13	-2.0
2,949,039	+		DZA65_RS13750	0.13	-3.6
2,949,040	-		DZA65_RS13750	0.13	+2.4
2,949,109	+		DZA65_RS13750	0.15	-2.0
2,949,451	-		DZA65_RS13750	0.29	-1.3
2,949,451	-		DZA65_RS13750	0.29	-1.5
2,949,497	-		DZA65_RS13750	0.31	-1.7
2,949,510	-		DZA65_RS13750	0.31	-3.5
2,949,616	+		DZA65_RS13750	0.35	-1.7
2,949,822	+		DZA65_RS13750	0.43	-0.3
2,949,988	+		DZA65_RS13750	0.50	-2.9
2,949,988	+		DZA65_RS13750	0.50	-0.7
2,949,999	+		DZA65_RS13750	0.50	+1.0
2,950,086	+		DZA65_RS13750	0.54	-2.9
2,950,216	+		DZA65_RS13750	0.59	-1.7
2,950,218	+		DZA65_RS13750	0.59	-1.7
2,950,218	+		DZA65_RS13750	0.59	-3.2
2,950,218	+		DZA65_RS13750	0.59	-1.5
2,950,218	+		DZA65_RS13750	0.59	-1.0
2,950,218	+		DZA65_RS13750	0.59	-2.3
2,950,218	+		DZA65_RS13750	0.59	-3.3
2,950,218	+		DZA65_RS13750	0.59	-1.7
2,950,218	+		DZA65_RS13750	0.59	+1.2
2,950,218	+		DZA65_RS13750	0.59	-3.2
2,950,218	+		DZA65_RS13750	0.59	-2.7
2,950,218	+		DZA65_RS13750	0.59	-1.1
2,950,218	+		DZA65_RS13750	0.59	-1.4
2,950,218	+		DZA65_RS13750	0.59	-3.2
2,950,218	+		DZA65_RS13750	0.59	-3.3
2,950,218	+		DZA65_RS13750	0.59	-2.7
2,950,218	+		DZA65_RS13750	0.59	-1.4
2,950,218	+		DZA65_RS13750	0.59	-3.0
2,950,219	-		DZA65_RS13750	0.59	-1.7
2,950,219	-		DZA65_RS13750	0.59	+0.8
2,950,219	-		DZA65_RS13750	0.59	-3.4
2,950,219	-		DZA65_RS13750	0.59	-1.7
2,950,219	-		DZA65_RS13750	0.59	-2.3
2,950,219	-		DZA65_RS13750	0.59	-2.5
2,950,307	-		DZA65_RS13750	0.62	-1.6
2,950,307	-		DZA65_RS13750	0.62	-0.9
2,950,398	+		DZA65_RS13750	0.66	+0.8
2,950,398	+		DZA65_RS13750	0.66	-1.0
2,950,398	+		DZA65_RS13750	0.66	-1.6
2,950,398	+		DZA65_RS13750	0.66	-2.3
2,950,399	-		DZA65_RS13750	0.66	-2.2
2,950,399	-		DZA65_RS13750	0.66	-1.3
2,950,399	-		DZA65_RS13750	0.66	-1.7
2,950,399	-		DZA65_RS13750	0.66	-0.5
2,950,403	-		DZA65_RS13750	0.66	-2.0
2,950,443	+		DZA65_RS13750	0.68	-2.7
2,950,444	-		DZA65_RS13750	0.68	-1.7
2,950,444	-		DZA65_RS13750	0.68	-3.8
2,950,444	-		DZA65_RS13750	0.68	-2.8
2,950,563	+		DZA65_RS13750	0.73	-3.2
2,950,563	+		DZA65_RS13750	0.73	-2.0
2,950,563	+		DZA65_RS13750	0.73	-2.3
2,950,564	-		DZA65_RS13750	0.73	-4.5
2,950,564	-		DZA65_RS13750	0.73	-1.7
2,950,564	-		DZA65_RS13750	0.73	-2.0
2,950,564	-		DZA65_RS13750	0.73	+0.3
2,950,564	-		DZA65_RS13750	0.73	-1.7
2,950,567	+		DZA65_RS13750	0.73	-3.5
2,950,677	+		DZA65_RS13750	0.77	-4.9
2,950,677	+		DZA65_RS13750	0.77	-1.7
2,950,678	-		DZA65_RS13750	0.77	-2.3
2,950,678	-		DZA65_RS13750	0.77	-3.7
2,950,678	-		DZA65_RS13750	0.77	-2.7
2,950,678	-		DZA65_RS13750	0.77	-2.0
2,950,678	-		DZA65_RS13750	0.77	-3.2
2,950,707	-				-1.7
2,950,765	+		DZA65_RS13750	0.80	-1.9
2,950,765	+		DZA65_RS13750	0.80	-1.7
2,950,765	+		DZA65_RS13750	0.80	-0.3
2,950,774	+		DZA65_RS13750	0.81	-1.3
2,950,774	+		DZA65_RS13750	0.81	+0.3
2,950,774	+		DZA65_RS13750	0.81	-0.0
2,950,775	-		DZA65_RS13750	0.81	+1.2
2,950,775	-		DZA65_RS13750	0.81	-2.3
2,950,777	-		DZA65_RS13750	0.81	-3.0
2,950,814	+		DZA65_RS13750	0.82	-2.3
2,950,815	-		DZA65_RS13750	0.82	-2.8
2,950,824	+		DZA65_RS13750	0.83	-2.5
2,950,825	-		DZA65_RS13750	0.83	-1.7
2,950,842	-		DZA65_RS13750	0.83	-0.2
2,950,842	-		DZA65_RS13750	0.83	-1.3
2,950,842	-		DZA65_RS13750	0.83	-3.4
2,951,105	-				-3.4
2,951,122	+				-0.3
2,951,122	+				-2.9
2,951,123	-				-1.9
2,951,123	-				-3.9
2,951,123	-				-2.3
2,951,123	-				+0.4
2,951,125	+				-2.0
2,951,235	+				-1.3
2,951,235	+				-2.5
2,951,236	-				-2.0
2,951,245	+				-1.7
2,951,257	+				-1.7
2,951,258	-				-2.3
2,951,258	-				-1.7
2,951,258	-				-1.7
2,951,465	+		DZA65_RS13755	0.13	-2.5
2,951,465	+		DZA65_RS13755	0.13	-1.7
2,951,547	-		DZA65_RS13755	0.19	-1.3
2,951,590	+		DZA65_RS13755	0.21	-1.1
2,951,590	+		DZA65_RS13755	0.21	-2.3
2,951,590	+		DZA65_RS13755	0.21	-1.5
2,951,591	-		DZA65_RS13755	0.21	-3.4
2,951,591	-		DZA65_RS13755	0.21	-1.7
2,951,591	-		DZA65_RS13755	0.21	-2.5
2,951,591	-		DZA65_RS13755	0.21	-2.5
2,951,748	+		DZA65_RS13755	0.31	+1.1
2,951,748	+		DZA65_RS13755	0.31	-0.7
2,951,749	-		DZA65_RS13755	0.31	-2.0
2,951,749	-		DZA65_RS13755	0.31	-3.6
2,951,886	-		DZA65_RS13755	0.40	-1.3
2,951,887	+		DZA65_RS13755	0.40	-1.3
2,951,887	+		DZA65_RS13755	0.40	-2.1
2,951,957	+		DZA65_RS13755	0.45	-1.3
2,951,958	-		DZA65_RS13755	0.45	+0.3
2,951,958	-		DZA65_RS13755	0.45	-3.2
2,951,958	-		DZA65_RS13755	0.45	-2.5
2,951,958	-		DZA65_RS13755	0.45	-2.6
2,951,961	+		DZA65_RS13755	0.45	-1.5
2,951,961	+		DZA65_RS13755	0.45	-0.3
2,951,962	-		DZA65_RS13755	0.45	-1.1
2,951,962	-		DZA65_RS13755	0.45	-2.3
2,951,962	-		DZA65_RS13755	0.45	-1.3
2,952,192	-		DZA65_RS13755	0.60	-2.3
2,952,192	-		DZA65_RS13755	0.60	-0.3