Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13710

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,940,630	+				-0.4
2,940,631	-				+0.3
2,940,707	-				-0.7
2,940,745	+				-0.1
2,940,745	+				+0.8
2,940,745	+				-1.4
2,940,746	-				-1.3
2,940,746	-				-0.7
2,940,746	-				-0.5
2,940,871	+				-0.5
2,940,871	+				-0.1
2,940,871	+				+0.3
2,940,872	-				-0.3
2,940,872	-				-2.0
2,940,872	-				+1.8
2,940,872	-				-0.1
2,940,874	+				+1.7
2,940,874	+				-1.0
2,940,875	-				+1.1
2,940,875	-				-0.1
2,940,875	-				-0.8
2,940,907	-				+1.4
2,940,913	+				-0.1
2,940,913	+				-1.0
2,940,913	+				+1.9
2,940,913	+				-0.7
2,940,913	+				+0.3
2,940,913	+				-1.5
2,940,914	-				-0.0
2,940,945	+				+0.3
2,940,978	+				-3.3
2,940,978	+				+1.6
2,940,979	-				-2.2
2,940,979	-				-0.5
2,940,982	+		DZA65_RS13705	0.10	-0.1
2,940,982	+		DZA65_RS13705	0.10	-0.6
2,940,982	+		DZA65_RS13705	0.10	+3.8
2,940,982	+		DZA65_RS13705	0.10	+0.3
2,940,982	+		DZA65_RS13705	0.10	+0.3
2,940,982	+		DZA65_RS13705	0.10	-0.2
2,940,982	+		DZA65_RS13705	0.10	-2.3
2,940,982	+		DZA65_RS13705	0.10	-0.4
2,940,982	+		DZA65_RS13705	0.10	+0.5
2,940,982	+		DZA65_RS13705	0.10	+1.0
2,940,982	+		DZA65_RS13705	0.10	+0.3
2,940,982	+		DZA65_RS13705	0.10	-1.3
2,940,982	+		DZA65_RS13705	0.10	+0.9
2,940,983	-		DZA65_RS13705	0.11	+1.5
2,940,983	-		DZA65_RS13705	0.11	-1.0
2,940,983	-		DZA65_RS13705	0.11	-1.0
2,940,983	-		DZA65_RS13705	0.11	-0.5
2,940,983	-		DZA65_RS13705	0.11	-0.1
2,940,983	-		DZA65_RS13705	0.11	+0.9
2,940,983	-		DZA65_RS13705	0.11	-0.9
2,940,983	-		DZA65_RS13705	0.11	+0.1
2,940,983	-		DZA65_RS13705	0.11	+0.7
2,940,983	-		DZA65_RS13705	0.11	+0.4
2,940,983	-		DZA65_RS13705	0.11	-1.4
2,940,983	-		DZA65_RS13705	0.11	-0.2
2,940,983	-		DZA65_RS13705	0.11	+1.0
2,940,984	+		DZA65_RS13705	0.11	-1.0
2,940,984	+		DZA65_RS13705	0.11	-0.0
2,940,984	+		DZA65_RS13705	0.11	-0.7
2,940,985	-		DZA65_RS13705	0.11	-1.3
2,941,101	+		DZA65_RS13705	0.52	-1.0
2,941,101	+		DZA65_RS13705	0.52	+0.3
2,941,102	-		DZA65_RS13705	0.52	-0.9
2,941,102	-		DZA65_RS13705	0.52	-1.7
2,941,124	+		DZA65_RS13705	0.60	+1.2
2,941,125	-		DZA65_RS13705	0.60	+0.2
2,941,191	+		DZA65_RS13705	0.83	-1.0
2,941,192	-		DZA65_RS13705	0.83	-0.4
2,941,207	-		DZA65_RS13705	0.89	-0.7
2,941,242	+				-0.3
2,941,256	+				-0.1
2,941,259	-				+2.1
2,941,259	-				+0.3
2,941,340	-				-0.4
2,941,352	+				-0.0
2,941,352	+				-0.6
2,941,352	+				+0.1
2,941,352	+				+1.0
2,941,352	+				-0.0
2,941,353	-				-0.7
2,941,358	+				+0.7
2,941,359	-				+0.2
2,941,359	-				-0.7
2,941,380	+				+0.5
2,941,380	+				-0.2
2,941,380	+				+0.2
2,941,381	-				-0.9
2,941,394	+				-2.7
2,941,394	+				+0.5
2,941,394	+				+2.1
2,941,395	-				-2.9
2,941,395	-				-2.9
2,941,395	-				-0.4
2,941,395	-				-0.1
2,941,395	-				+0.7
2,941,398	+				-1.3
2,941,398	+				-0.9
2,941,399	-				+0.9
2,941,506	-				-1.5
2,941,506	-				-3.0
2,941,506	-				-4.2
2,941,513	+				-4.0
2,941,514	-				-1.7
2,941,515	+				-1.7
2,941,515	+				-2.6
2,941,515	+				-1.3
2,941,570	-		DZA65_RS13710	0.14	-0.8
2,941,572	+		DZA65_RS13710	0.15	-0.9
2,941,572	+		DZA65_RS13710	0.15	-1.2
2,941,572	+		DZA65_RS13710	0.15	+0.3
2,941,572	+		DZA65_RS13710	0.15	-2.7
2,941,572	+		DZA65_RS13710	0.15	-1.9
2,941,573	-		DZA65_RS13710	0.15	-2.7
2,941,573	-		DZA65_RS13710	0.15	-1.4
2,941,573	-		DZA65_RS13710	0.15	+0.5
2,941,594	+		DZA65_RS13710	0.17	-0.5
2,941,594	+		DZA65_RS13710	0.17	-1.3
2,941,594	+		DZA65_RS13710	0.17	-3.3
2,941,594	+		DZA65_RS13710	0.17	-2.5
2,941,595	-		DZA65_RS13710	0.17	-1.0
2,941,595	-		DZA65_RS13710	0.17	-1.6
2,941,657	+		DZA65_RS13710	0.23	-2.0
2,941,712	+		DZA65_RS13710	0.28	+0.9
2,941,712	+		DZA65_RS13710	0.28	-2.0
2,941,712	+		DZA65_RS13710	0.28	-1.2
2,941,712	+		DZA65_RS13710	0.28	-3.5
2,941,712	+		DZA65_RS13710	0.28	-1.3
2,941,712	+		DZA65_RS13710	0.28	-1.4
2,941,713	-		DZA65_RS13710	0.28	-1.5
2,941,713	-		DZA65_RS13710	0.28	-0.7
2,941,713	-		DZA65_RS13710	0.28	-2.2
2,941,713	-		DZA65_RS13710	0.28	-1.3
2,941,789	+		DZA65_RS13710	0.35	-2.8
2,941,790	-		DZA65_RS13710	0.35	-0.9
2,941,790	-		DZA65_RS13710	0.35	-0.9
2,941,790	-		DZA65_RS13710	0.35	-0.5
2,941,953	+		DZA65_RS13710	0.51	-1.9
2,941,953	+		DZA65_RS13710	0.51	-2.3
2,941,954	-		DZA65_RS13710	0.51	+0.3
2,941,954	-		DZA65_RS13710	0.51	-1.7
2,941,954	-		DZA65_RS13710	0.51	-0.9
2,941,954	-		DZA65_RS13710	0.51	-2.3
2,941,954	-		DZA65_RS13710	0.51	-0.4
2,941,954	-		DZA65_RS13710	0.51	-1.5
2,941,954	-		DZA65_RS13710	0.51	-2.0
2,941,954	-		DZA65_RS13710	0.51	+2.9
2,941,956	+		DZA65_RS13710	0.51	-1.0
2,941,956	+		DZA65_RS13710	0.51	-1.3
2,941,956	+		DZA65_RS13710	0.51	-3.0
2,941,957	-		DZA65_RS13710	0.51	-0.7
2,941,957	-		DZA65_RS13710	0.51	-1.9
2,941,957	-		DZA65_RS13710	0.51	-0.4
2,941,978	+		DZA65_RS13710	0.53	-2.3
2,941,978	+		DZA65_RS13710	0.53	+1.6
2,941,978	+		DZA65_RS13710	0.53	-2.3
2,941,978	+		DZA65_RS13710	0.53	-3.0
2,941,978	+		DZA65_RS13710	0.53	-2.7
2,941,978	+		DZA65_RS13710	0.53	+0.5
2,941,978	+		DZA65_RS13710	0.53	-2.3
2,941,979	-		DZA65_RS13710	0.54	-1.4
2,941,979	-		DZA65_RS13710	0.54	-0.3
2,941,979	-		DZA65_RS13710	0.54	+0.3
2,941,979	-		DZA65_RS13710	0.54	-0.2
2,941,979	-		DZA65_RS13710	0.54	-1.8
2,941,979	-		DZA65_RS13710	0.54	-1.2
2,942,001	+		DZA65_RS13710	0.56	-1.7
2,942,255	-		DZA65_RS13710	0.80	-1.5
2,942,264	+		DZA65_RS13710	0.81	-1.1
2,942,264	+		DZA65_RS13710	0.81	-1.5
2,942,265	-		DZA65_RS13710	0.81	-1.7
2,942,363	+				-1.7
2,942,379	-				-2.7
2,942,498	+				+1.4
2,942,498	+				+0.0
2,942,498	+				+0.3
2,942,498	+				-0.1
2,942,498	+				+0.6
2,942,499	-				-0.4
2,942,499	-				-0.4
2,942,499	-				+1.3
2,942,499	-				+0.5
2,942,502	-				+2.5
2,942,502	-				+1.6
2,942,502	-				-1.3
2,942,513	+				+0.8
2,942,536	-				-0.0
2,942,536	-				-0.4
2,942,541	+				-0.1
2,942,541	+				+0.4
2,942,541	+				+1.3
2,942,541	+				-3.3
2,942,541	+				+0.5
2,942,541	+				+0.6
2,942,542	-				+0.6
2,942,542	-				-0.9
2,942,602	+				-0.7
2,942,602	+				+0.3
2,942,602	+				-1.6
2,942,602	+				-2.3
2,942,603	-				+1.3
2,942,603	-				+1.0
2,942,611	+				+0.4
2,942,611	+				-0.3
2,942,611	+				+0.0
2,942,611	+				-0.4
2,942,611	+				-0.6
2,942,611	+				+0.2
2,942,611	+				+0.1
2,942,611	+				+0.3
2,942,612	-				+1.0
2,942,612	-				+1.0
2,942,612	-				-0.3
2,942,612	-				+0.7
2,942,612	-				-0.0
2,942,612	-				-0.5
2,942,617	-				-0.1
2,942,670	+		DZA65_RS13715	0.30	-0.7
2,942,670	+		DZA65_RS13715	0.30	-0.9
2,942,670	+		DZA65_RS13715	0.30	+1.9
2,942,670	+		DZA65_RS13715	0.30	-1.6
2,942,670	+		DZA65_RS13715	0.30	-2.0
2,942,670	+		DZA65_RS13715	0.30	+2.5
2,942,670	+		DZA65_RS13715	0.30	+0.3
2,942,671	-		DZA65_RS13715	0.30	-0.9
2,942,671	-		DZA65_RS13715	0.30	+0.8
2,942,671	-		DZA65_RS13715	0.30	-1.1
2,942,671	-		DZA65_RS13715	0.30	-0.7
2,942,671	-		DZA65_RS13715	0.30	+1.2
2,942,671	-		DZA65_RS13715	0.30	+1.4
2,942,671	-		DZA65_RS13715	0.30	+0.3
2,942,671	-		DZA65_RS13715	0.30	+1.0
2,942,671	-		DZA65_RS13715	0.30	+0.5
2,942,693	+		DZA65_RS13715	0.40	-0.3
2,942,694	-		DZA65_RS13715	0.40	-0.7
2,942,862	+				+0.3
2,942,863	-				-0.5
2,942,881	+				+1.6
2,942,881	+				+0.3
2,942,881	+				-1.2
2,942,881	+				+1.1
2,942,882	-				+0.7
2,942,882	-				-1.9
2,942,985	+				-0.5
2,943,051	+				+0.1
2,943,051	+				+0.3
2,943,052	-				-0.5
2,943,052	-				-1.7
2,943,052	-				-0.7
2,943,053	+				+0.2
2,943,053	+				+0.7
2,943,053	+				+0.3
2,943,053	+				-0.5
2,943,053	+				-1.3
2,943,053	+				-2.3
2,943,054	-				-0.4
2,943,054	-				+2.3
2,943,054	-				-1.1
2,943,054	-				+0.5
2,943,054	-				+0.1
2,943,054	-				+0.5
2,943,059	+				+0.3
2,943,111	+				-0.4
2,943,111	+				-0.1
2,943,111	+				-0.5
2,943,112	-				+0.0
2,943,116	-				+1.7
2,943,129	+				+1.3
2,943,129	+				+1.5
2,943,133	+				+1.3
2,943,133	+				-1.5
2,943,174	+		DZA65_RS13720	0.16	+0.3
2,943,174	+		DZA65_RS13720	0.16	+1.4
2,943,174	+		DZA65_RS13720	0.16	-1.3
2,943,203	+		DZA65_RS13720	0.27	+1.7
2,943,204	-		DZA65_RS13720	0.27	+0.8
2,943,230	+		DZA65_RS13720	0.38	-0.6
2,943,231	-		DZA65_RS13720	0.38	-1.9
2,943,282	+		DZA65_RS13720	0.58	+0.5
2,943,313	+				-1.3
2,943,313	+		DZA65_RS13720	0.70	+0.2
2,943,313	+		DZA65_RS13720	0.70	+1.2
2,943,314	-		DZA65_RS13720	0.71	-0.7
2,943,314	-		DZA65_RS13720	0.71	+1.1
2,943,314	-		DZA65_RS13720	0.71	+0.4
2,943,314	-		DZA65_RS13720	0.71	-1.5
2,943,314	-		DZA65_RS13720	0.71	+2.0
2,943,359	+				-0.7
2,943,380	-				+0.4
2,943,420	+				-1.5