Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13200

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,826,112	-		DZA65_RS13190	0.88	-1.4
2,826,142	-				+0.9
2,826,148	+				+0.4
2,826,153	-				+0.4
2,826,172	+				+0.3
2,826,269	+				+0.3
2,826,349	+				-1.7
2,826,350	-				-1.3
2,826,350	-				-0.1
2,826,353	+				+0.5
2,826,353	+				+0.0
2,826,469	+				-0.3
2,826,469	+				+0.4
2,826,469	+				-0.2
2,826,469	+				-0.9
2,826,469	+				-0.7
2,826,469	+				+0.3
2,826,469	+				+1.7
2,826,469	+				-1.3
2,826,469	+				+2.0
2,826,470	-				+0.9
2,826,508	+				+0.6
2,826,509	-				+1.6
2,826,524	+				+0.6
2,826,524	+				-2.7
2,826,524	+				+0.0
2,826,525	-				+1.3
2,826,525	-				+0.7
2,826,525	-				+0.6
2,826,528	+				+4.4
2,826,528	+				-0.1
2,826,611	+				+0.5
2,826,697	-				+1.6
2,826,879	+		DZA65_RS13195	0.20	-2.2
2,826,916	-		DZA65_RS13195	0.39	+1.2
2,826,956	+		DZA65_RS13195	0.59	-1.0
2,826,956	+		DZA65_RS13195	0.59	-0.5
2,827,001	+		DZA65_RS13195	0.81	+0.9
2,827,001	+		DZA65_RS13195	0.81	-1.3
2,827,002	-		DZA65_RS13195	0.82	+0.0
2,827,009	+		DZA65_RS13195	0.85	-0.6
2,827,009	+		DZA65_RS13195	0.85	+0.0
2,827,009	+		DZA65_RS13195	0.85	-0.5
2,827,009	+		DZA65_RS13195	0.85	-0.3
2,827,010	-		DZA65_RS13195	0.86	+1.0
2,827,032	+				-0.3
2,827,032	+				-1.0
2,827,032	+				-1.7
2,827,032	+				-2.7
2,827,032	+				+0.3
2,827,032	+				-0.4
2,827,032	+				+1.0
2,827,033	-				+0.9
2,827,033	-				-1.0
2,827,033	-				-1.2
2,827,033	-				+0.5
2,827,033	-				+0.5
2,827,093	+				+1.3
2,827,094	-				+0.5
2,827,097	+				-0.5
2,827,098	-				+0.3
2,827,098	-				+0.3
2,827,098	-				-1.0
2,827,098	-				+0.4
2,827,098	-				-1.0
2,827,109	-		DZA65_RS13200	0.10	-2.3
2,827,155	+		DZA65_RS13200	0.16	-0.7
2,827,156	-		DZA65_RS13200	0.16	-2.0
2,827,164	+		DZA65_RS13200	0.18	+0.4
2,827,165	-		DZA65_RS13200	0.18	-1.1
2,827,165	-		DZA65_RS13200	0.18	+1.3
2,827,165	-		DZA65_RS13200	0.18	-0.7
2,827,199	+		DZA65_RS13200	0.22	+0.3
2,827,199	+		DZA65_RS13200	0.22	+0.3
2,827,199	+		DZA65_RS13200	0.22	-0.8
2,827,199	+		DZA65_RS13200	0.22	-0.7
2,827,199	+		DZA65_RS13200	0.22	-0.2
2,827,199	+		DZA65_RS13200	0.22	+0.2
2,827,199	+		DZA65_RS13200	0.22	+0.3
2,827,199	+		DZA65_RS13200	0.22	+0.1
2,827,200	-		DZA65_RS13200	0.22	+0.5
2,827,200	-		DZA65_RS13200	0.22	+0.7
2,827,200	-		DZA65_RS13200	0.22	-1.3
2,827,200	-		DZA65_RS13200	0.22	+0.5
2,827,200	-		DZA65_RS13200	0.22	+1.3
2,827,200	-		DZA65_RS13200	0.22	+1.7
2,827,200	-		DZA65_RS13200	0.22	-1.7
2,827,200	-		DZA65_RS13200	0.22	-0.1
2,827,200	-		DZA65_RS13200	0.22	-0.9
2,827,221	+		DZA65_RS13200	0.25	-0.1
2,827,221	+		DZA65_RS13200	0.25	+0.1
2,827,221	+		DZA65_RS13200	0.25	-0.3
2,827,221	+		DZA65_RS13200	0.25	+1.1
2,827,221	+				+2.6
2,827,222	-		DZA65_RS13200	0.25	-1.9
2,827,222	-		DZA65_RS13200	0.25	+1.0
2,827,246	+		DZA65_RS13200	0.29	+0.5
2,827,246	+		DZA65_RS13200	0.29	-1.3
2,827,247	-		DZA65_RS13200	0.29	+0.1
2,827,247	-		DZA65_RS13200	0.29	-0.0
2,827,247	-		DZA65_RS13200	0.29	-2.0
2,827,247	-		DZA65_RS13200	0.29	-0.7
2,827,247	-		DZA65_RS13200	0.29	-1.7
2,827,247	-		DZA65_RS13200	0.29	-1.7
2,827,254	+		DZA65_RS13200	0.30	-0.3
2,827,254	+		DZA65_RS13200	0.30	-1.7
2,827,254	+		DZA65_RS13200	0.30	+2.0
2,827,254	+		DZA65_RS13200	0.30	+0.2
2,827,254	+		DZA65_RS13200	0.30	-0.9
2,827,254	+		DZA65_RS13200	0.30	-1.3
2,827,254	+		DZA65_RS13200	0.30	+0.4
2,827,254	+		DZA65_RS13200	0.30	+0.3
2,827,254	+		DZA65_RS13200	0.30	-0.8
2,827,254	+		DZA65_RS13200	0.30	-1.0
2,827,254	+		DZA65_RS13200	0.30	+0.7
2,827,254	+		DZA65_RS13200	0.30	-0.5
2,827,254	+		DZA65_RS13200	0.30	-0.7
2,827,254	+		DZA65_RS13200	0.30	-0.6
2,827,254	+		DZA65_RS13200	0.30	+0.0
2,827,254	+		DZA65_RS13200	0.30	-0.5
2,827,255	-		DZA65_RS13200	0.30	-2.6
2,827,255	-		DZA65_RS13200	0.30	-0.9
2,827,255	-		DZA65_RS13200	0.30	-0.0
2,827,255	-		DZA65_RS13200	0.30	-0.3
2,827,255	-		DZA65_RS13200	0.30	+0.3
2,827,255	-		DZA65_RS13200	0.30	+0.6
2,827,255	-		DZA65_RS13200	0.30	+1.1
2,827,255	-		DZA65_RS13200	0.30	-0.4
2,827,255	-		DZA65_RS13200	0.30	+0.8
2,827,310	+		DZA65_RS13200	0.37	+0.8
2,827,352	+		DZA65_RS13200	0.43	-2.2
2,827,352	+		DZA65_RS13200	0.43	-1.1
2,827,352	+		DZA65_RS13200	0.43	-0.6
2,827,352	+		DZA65_RS13200	0.43	+0.3
2,827,352	+				-0.7
2,827,352	+		DZA65_RS13200	0.43	-0.6
2,827,353	-		DZA65_RS13200	0.43	+0.2
2,827,353	-		DZA65_RS13200	0.43	+1.5
2,827,372	+		DZA65_RS13200	0.45	+1.3
2,827,373	-		DZA65_RS13200	0.46	-0.1
2,827,373	-		DZA65_RS13200	0.46	-1.7
2,827,414	+		DZA65_RS13200	0.51	-1.0
2,827,429	+		DZA65_RS13200	0.53	-1.7
2,827,429	+		DZA65_RS13200	0.53	-0.4
2,827,610	-		DZA65_RS13200	0.77	-1.0
2,827,636	+		DZA65_RS13200	0.81	+0.4
2,827,636	+		DZA65_RS13200	0.81	-1.7
2,827,637	-		DZA65_RS13200	0.81	-0.4
2,827,662	+		DZA65_RS13200	0.84	+1.0
2,827,662	+		DZA65_RS13200	0.84	-0.6
2,827,662	+		DZA65_RS13200	0.84	-1.1
2,827,663	-		DZA65_RS13200	0.84	+3.1
2,827,720	-				+1.1
2,827,738	+				-0.8
2,827,739	-				+0.2
2,827,739	-				-0.3
2,827,873	+				-1.3
2,827,873	+				+0.3
2,827,878	+				-1.7
2,827,879	-				+1.4
2,827,879	-				-1.3
2,827,879	-				-0.5
2,827,879	-				-3.4
2,827,896	+				+0.1
2,827,991	-				-0.4
2,827,991	-				-0.1
2,828,047	-				+0.4
2,828,056	+				+1.0
2,828,056	+				+1.1
2,828,057	-				-0.3
2,828,059	+				+3.4
2,828,059	+				+0.0
2,828,059	+				-0.7
2,828,059	+				+0.3
2,828,060	-				+0.2
2,828,060	-				+1.5
2,828,060	-				-0.4
2,828,060	-				-1.5
2,828,060	-				-2.3
2,828,072	+				-0.1
2,828,073	-				+0.1
2,828,091	+		DZA65_RS13205	0.13	+1.0
2,828,091	+		DZA65_RS13205	0.13	+0.5
2,828,091	+		DZA65_RS13205	0.13	-2.9
2,828,091	+		DZA65_RS13205	0.13	-2.0
2,828,091	+		DZA65_RS13205	0.13	+0.6
2,828,091	+		DZA65_RS13205	0.13	+1.5
2,828,091	+		DZA65_RS13205	0.13	-0.5
2,828,091	+		DZA65_RS13205	0.13	+0.2
2,828,091	+		DZA65_RS13205	0.13	-0.9
2,828,091	+		DZA65_RS13205	0.13	-1.3
2,828,091	+		DZA65_RS13205	0.13	+1.6
2,828,091	+		DZA65_RS13205	0.13	+0.1
2,828,091	+		DZA65_RS13205	0.13	-0.4
2,828,092	-		DZA65_RS13205	0.14	+0.3
2,828,092	-		DZA65_RS13205	0.14	+1.5
2,828,092	-		DZA65_RS13205	0.14	-0.6
2,828,092	-		DZA65_RS13205	0.14	-0.4
2,828,092	-		DZA65_RS13205	0.14	+0.0
2,828,092	-		DZA65_RS13205	0.14	+1.0
2,828,092	-		DZA65_RS13205	0.14	+0.9
2,828,092	-		DZA65_RS13205	0.14	+0.3
2,828,092	-		DZA65_RS13205	0.14	+0.3
2,828,092	-		DZA65_RS13205	0.14	+0.1
2,828,092	-		DZA65_RS13205	0.14	+0.5
2,828,092	-		DZA65_RS13205	0.14	+0.4
2,828,144	-		DZA65_RS13205	0.28	+1.5
2,828,148	+		DZA65_RS13205	0.30	-1.0
2,828,148	+		DZA65_RS13205	0.30	-0.1
2,828,166	+		DZA65_RS13205	0.35	-0.1
2,828,166	+		DZA65_RS13205	0.35	+0.7
2,828,167	-				+0.9
2,828,167	-		DZA65_RS13205	0.35	+1.3
2,828,193	+		DZA65_RS13205	0.43	-0.9
2,828,193	+		DZA65_RS13205	0.43	-1.0
2,828,193	+		DZA65_RS13205	0.43	+0.7
2,828,194	-		DZA65_RS13205	0.43	-1.7
2,828,218	+		DZA65_RS13205	0.50	-1.3
2,828,218	+		DZA65_RS13205	0.50	-1.1
2,828,239	+		DZA65_RS13205	0.56	+1.4
2,828,267	+		DZA65_RS13205	0.64	-1.7
2,828,287	-		DZA65_RS13205	0.70	-1.4
2,828,325	+		DZA65_RS13205	0.80	+0.6
2,828,409	+				-1.1
2,828,410	-				+1.9
2,828,410	-				+1.3
2,828,410	-				-0.2
2,828,419	+				+0.4
2,828,430	+				-0.1
2,828,430	+				-1.1
2,828,430	+				+0.3
2,828,430	+				+0.6
2,828,430	+				-0.6
2,828,430	+				+0.3
2,828,430	+				-0.6
2,828,430	+				-0.7
2,828,430	+				+0.1
2,828,431	-				-0.2
2,828,431	-				-0.3
2,828,431	-				+0.5
2,828,431	-				-0.7
2,828,431	-				-1.3
2,828,431	-				-0.1
2,828,431	-				+1.2
2,828,431	-				+0.3
2,828,431	-				-0.4
2,828,432	+				-0.9
2,828,432	+				-1.5
2,828,433	-				-2.3
2,828,433	-				-1.1
2,828,441	+				+1.6
2,828,441	+				+0.3
2,828,441	+				-1.3
2,828,441	+				-1.0
2,828,441	+				-0.5
2,828,441	+				+0.4
2,828,441	+				+1.0
2,828,442	-				-0.0
2,828,442	-				-0.3
2,828,442	-				+0.9
2,828,442	-				-0.0
2,828,442	-				-1.0
2,828,442	-				+0.9
2,828,442	-				+0.6
2,828,442	-				-2.0
2,828,469	-				+1.1
2,828,551	+				-2.0
2,828,551	+				+0.3
2,828,552	-				-0.2
2,828,552	-				+0.8
2,828,554	+				+0.0
2,828,554	+				-0.1
2,828,555	-				-0.7
2,828,555	-				+0.9
2,828,558	+				+0.7
2,828,558	+				-0.0
2,828,559	-				+0.6
2,828,559	-				-0.3
2,828,596	+		DZA65_RS13210	0.23	-1.3
2,828,596	+		DZA65_RS13210	0.23	-0.9
2,828,596	+		DZA65_RS13210	0.23	-1.6
2,828,596	+				+1.3
2,828,596	+		DZA65_RS13210	0.23	+1.8
2,828,596	+		DZA65_RS13210	0.23	-0.7
2,828,596	+		DZA65_RS13210	0.23	+0.3
2,828,596	+		DZA65_RS13210	0.23	-3.5
2,828,596	+		DZA65_RS13210	0.23	-0.5
2,828,596	+		DZA65_RS13210	0.23	-0.6
2,828,596	+		DZA65_RS13210	0.23	-0.1
2,828,596	+		DZA65_RS13210	0.23	-0.2
2,828,596	+		DZA65_RS13210	0.23	-0.1
2,828,597	-		DZA65_RS13210	0.23	+0.6
2,828,597	-		DZA65_RS13210	0.23	-0.5
2,828,597	-		DZA65_RS13210	0.23	+0.2
2,828,597	-		DZA65_RS13210	0.23	-0.8
2,828,597	-		DZA65_RS13210	0.23	-0.8
2,828,597	-		DZA65_RS13210	0.23	+0.3
2,828,597	-		DZA65_RS13210	0.23	-0.1
2,828,597	-		DZA65_RS13210	0.23	+0.3
2,828,597	-		DZA65_RS13210	0.23	+0.4
2,828,597	-		DZA65_RS13210	0.23	+0.4
2,828,597	-		DZA65_RS13210	0.23	-1.3
2,828,597	-		DZA65_RS13210	0.23	-1.2
2,828,620	+		DZA65_RS13210	0.32	-0.1
2,828,620	+		DZA65_RS13210	0.32	+1.1
2,828,620	+		DZA65_RS13210	0.32	-0.4
2,828,642	+		DZA65_RS13210	0.40	-1.0
2,828,642	+		DZA65_RS13210	0.40	+0.3
2,828,643	-		DZA65_RS13210	0.40	+0.7
2,828,643	-		DZA65_RS13210	0.40	+2.8
2,828,653	+		DZA65_RS13210	0.44	+0.9
2,828,653	+		DZA65_RS13210	0.44	+0.5
2,828,653	+		DZA65_RS13210	0.44	-0.5
2,828,653	+		DZA65_RS13210	0.44	-1.3
2,828,653	+		DZA65_RS13210	0.44	-0.3
2,828,654	-		DZA65_RS13210	0.44	+1.3
2,828,654	-		DZA65_RS13210	0.44	-0.0
2,828,746	+		DZA65_RS13210	0.78	-0.7
2,828,747	-		DZA65_RS13210	0.79	-0.7
2,828,771	+		DZA65_RS13210	0.87	+0.5
2,828,771	+		DZA65_RS13210	0.87	+0.3
2,828,772	-		DZA65_RS13210	0.88	+0.8
2,828,772	-		DZA65_RS13210	0.88	-0.4
2,828,777	+		DZA65_RS13210	0.90	-0.8