Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12325

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,631,090	-		DZA65_RS12315	0.41	-1.0
2,631,126	+		DZA65_RS12315	0.45	+0.7
2,631,126	+		DZA65_RS12315	0.45	-2.4
2,631,127	-		DZA65_RS12315	0.45	+0.2
2,631,127	-		DZA65_RS12315	0.45	+0.2
2,631,127	-		DZA65_RS12315	0.45	-0.7
2,631,259	+		DZA65_RS12315	0.59	-2.1
2,631,259	+		DZA65_RS12315	0.59	-0.9
2,631,260	-		DZA65_RS12315	0.59	+0.8
2,631,260	-		DZA65_RS12315	0.59	+3.1
2,631,260	-		DZA65_RS12315	0.59	+1.3
2,631,384	+		DZA65_RS12315	0.72	-0.7
2,631,524	+		DZA65_RS12315	0.87	+2.9
2,631,536	+		DZA65_RS12315	0.89	+0.2
2,631,536	+		DZA65_RS12315	0.89	+1.2
2,631,536	+		DZA65_RS12315	0.89	+2.1
2,631,536	+		DZA65_RS12315	0.89	-2.6
2,631,536	+		DZA65_RS12315	0.89	-2.5
2,631,536	+		DZA65_RS12315	0.89	+0.4
2,631,537	-		DZA65_RS12315	0.89	-0.6
2,631,537	-		DZA65_RS12315	0.89	-0.2
2,631,619	-				+0.6
2,631,639	+				-0.7
2,631,639	+				-1.0
2,631,707	+				+0.9
2,631,708	-				+0.8
2,631,715	+				+0.4
2,631,716	-				-0.4
2,631,716	-				+0.2
2,632,047	+				-1.4
2,632,048	-				+0.2
2,632,059	-				-0.7
2,632,080	+				+0.2
2,632,080	+				+0.3
2,632,230	+		DZA65_RS12325	0.18	+0.7
2,632,230	+		DZA65_RS12325	0.18	+0.9
2,632,230	+		DZA65_RS12325	0.18	-0.4
2,632,231	-		DZA65_RS12325	0.18	+0.1
2,632,231	-		DZA65_RS12325	0.18	+0.8
2,632,231	-		DZA65_RS12325	0.18	+0.7
2,632,231	-				-0.6
2,632,236	+		DZA65_RS12325	0.18	-1.4
2,632,237	-		DZA65_RS12325	0.19	+0.8
2,632,237	-		DZA65_RS12325	0.19	+2.2
2,632,263	+		DZA65_RS12325	0.21	+0.6
2,632,263	+		DZA65_RS12325	0.21	+1.5
2,632,263	+		DZA65_RS12325	0.21	+0.3
2,632,264	-		DZA65_RS12325	0.22	+0.9
2,632,264	-		DZA65_RS12325	0.22	-0.4
2,632,340	-		DZA65_RS12325	0.30	-0.0
2,632,340	-		DZA65_RS12325	0.30	-1.3
2,632,430	+		DZA65_RS12325	0.40	-0.6
2,632,489	+		DZA65_RS12325	0.46	-1.8
2,632,489	+		DZA65_RS12325	0.46	+0.2
2,632,500	+		DZA65_RS12325	0.47	-0.1
2,632,500	+		DZA65_RS12325	0.47	+0.2
2,632,501	-		DZA65_RS12325	0.47	+0.6
2,632,501	-		DZA65_RS12325	0.47	+0.4
2,632,501	-		DZA65_RS12325	0.47	+0.2
2,632,501	-		DZA65_RS12325	0.47	-1.0
2,632,501	-		DZA65_RS12325	0.47	-0.3
2,632,519	+		DZA65_RS12325	0.49	-1.0
2,632,519	+		DZA65_RS12325	0.49	+0.8
2,632,519	+		DZA65_RS12325	0.49	+1.4
2,632,520	-		DZA65_RS12325	0.50	+0.2
2,632,570	+		DZA65_RS12325	0.55	+0.2
2,632,570	+		DZA65_RS12325	0.55	-1.1
2,632,570	+		DZA65_RS12325	0.55	+2.1
2,632,570	+		DZA65_RS12325	0.55	-2.1
2,632,571	-		DZA65_RS12325	0.55	-1.2
2,632,571	-		DZA65_RS12325	0.55	-0.1
2,632,571	-		DZA65_RS12325	0.55	+0.4
2,632,572	+		DZA65_RS12325	0.55	-1.7
2,632,572	+		DZA65_RS12325	0.55	+2.2
2,632,572	+		DZA65_RS12325	0.55	-0.0
2,632,572	+		DZA65_RS12325	0.55	+1.1
2,632,572	+		DZA65_RS12325	0.55	-0.2
2,632,572	+		DZA65_RS12325	0.55	-1.6
2,632,572	+		DZA65_RS12325	0.55	+1.4
2,632,572	+		DZA65_RS12325	0.55	+0.2
2,632,572	+		DZA65_RS12325	0.55	-1.1
2,632,572	+		DZA65_RS12325	0.55	+0.2
2,632,572	+		DZA65_RS12325	0.55	-0.3
2,632,572	+		DZA65_RS12325	0.55	-0.6
2,632,572	+				-0.4
2,632,572	+		DZA65_RS12325	0.55	+0.6
2,632,572	+		DZA65_RS12325	0.55	+0.5
2,632,573	-		DZA65_RS12325	0.55	-2.4
2,632,573	-		DZA65_RS12325	0.55	-1.6
2,632,573	-		DZA65_RS12325	0.55	+1.1
2,632,573	-		DZA65_RS12325	0.55	-0.6
2,632,573	-		DZA65_RS12325	0.55	-1.3
2,632,573	-		DZA65_RS12325	0.55	+0.2
2,632,573	-		DZA65_RS12325	0.55	-0.4
2,632,573	-		DZA65_RS12325	0.55	+0.0
2,632,573	-		DZA65_RS12325	0.55	-1.8
2,632,573	-		DZA65_RS12325	0.55	-0.6
2,632,617	+		DZA65_RS12325	0.60	+0.8
2,632,648	+		DZA65_RS12325	0.63	+0.4
2,632,648	+		DZA65_RS12325	0.63	-1.0
2,632,648	+		DZA65_RS12325	0.63	-0.0
2,632,649	-		DZA65_RS12325	0.64	+1.0
2,632,649	-		DZA65_RS12325	0.64	-0.2
2,632,650	+		DZA65_RS12325	0.64	-0.3
2,632,650	+		DZA65_RS12325	0.64	-0.3
2,632,650	+		DZA65_RS12325	0.64	-0.8
2,632,650	+		DZA65_RS12325	0.64	+0.3
2,632,651	-		DZA65_RS12325	0.64	-0.4
2,632,651	-		DZA65_RS12325	0.64	+1.4
2,632,651	-		DZA65_RS12325	0.64	-0.6
2,632,651	-				-1.4
2,632,707	+		DZA65_RS12325	0.70	-2.6
2,632,707	+		DZA65_RS12325	0.70	+1.2
2,632,707	+		DZA65_RS12325	0.70	-0.4
2,632,708	-		DZA65_RS12325	0.70	-0.2
2,632,708	-		DZA65_RS12325	0.70	+0.3
2,632,708	-		DZA65_RS12325	0.70	-0.8
2,632,726	+		DZA65_RS12325	0.72	+0.8
2,632,727	-		DZA65_RS12325	0.72	-0.1
2,632,727	-		DZA65_RS12325	0.72	-0.2
2,632,727	-		DZA65_RS12325	0.72	+0.6
2,632,729	+		DZA65_RS12325	0.72	-1.1
2,632,730	-		DZA65_RS12325	0.72	-1.5
2,632,739	-		DZA65_RS12325	0.73	+0.0
2,632,739	-		DZA65_RS12325	0.73	-1.8
2,632,771	+		DZA65_RS12325	0.77	+1.2
2,632,837	+		DZA65_RS12325	0.84	+1.3
2,632,846	+		DZA65_RS12325	0.85	-0.7
2,632,981	+				-0.1
2,633,001	+				+0.2
2,633,001	+				+2.1
2,633,001	+				+1.5
2,633,001	+				-0.6
2,633,001	+				+0.4
2,633,001	+				+0.5
2,633,001	+				+0.5
2,633,001	+				+0.4
2,633,001	+				+1.0
2,633,001	+				+1.2
2,633,002	-				-1.4
2,633,002	-				-0.0
2,633,002	-				-0.8
2,633,002	-				+0.4
2,633,002	-				-0.0
2,633,002	-				-0.8
2,633,178	+		DZA65_RS12330	0.23	+0.4
2,633,178	+		DZA65_RS12330	0.23	-0.4
2,633,178	+		DZA65_RS12330	0.23	-0.4
2,633,178	+		DZA65_RS12330	0.23	-0.0
2,633,179	-		DZA65_RS12330	0.23	-1.0
2,633,179	-		DZA65_RS12330	0.23	-0.3
2,633,179	-		DZA65_RS12330	0.23	-1.8
2,633,179	-		DZA65_RS12330	0.23	+0.7
2,633,179	-		DZA65_RS12330	0.23	+0.3
2,633,179	-		DZA65_RS12330	0.23	-1.4
2,633,237	+		DZA65_RS12330	0.31	+0.1
2,633,237	+		DZA65_RS12330	0.31	+0.2
2,633,238	-		DZA65_RS12330	0.31	-1.0
2,633,238	-		DZA65_RS12330	0.31	+0.6
2,633,238	-		DZA65_RS12330	0.31	-0.3
2,633,267	+		DZA65_RS12330	0.36	-0.2
2,633,268	-		DZA65_RS12330	0.36	+0.4
2,633,268	-		DZA65_RS12330	0.36	-0.5
2,633,395	-		DZA65_RS12330	0.55	-0.3
2,633,555	-		DZA65_RS12330	0.78	-0.1
2,633,653	-				-1.4
2,633,696	+				+0.7
2,633,696	+				+0.9
2,633,696	+				+0.6
2,633,697	-				+0.5
2,633,697	-				-1.5
2,633,761	+				-0.5
2,633,922	+		DZA65_RS12335	0.12	+0.7
2,633,923	-		DZA65_RS12335	0.12	+0.5
2,633,933	+		DZA65_RS12335	0.12	-0.4