Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11865

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,531,588	+		DZA65_RS11855	0.47	-0.8
2,531,589	-		DZA65_RS11855	0.47	-0.5
2,531,589	-		DZA65_RS11855	0.47	+1.4
2,531,591	+		DZA65_RS11855	0.47	-0.5
2,531,591	+		DZA65_RS11855	0.47	+0.5
2,531,592	-		DZA65_RS11855	0.48	-1.2
2,531,601	+		DZA65_RS11855	0.49	-0.8
2,531,602	-		DZA65_RS11855	0.49	+0.8
2,531,602	-		DZA65_RS11855	0.49	+1.2
2,531,602	-		DZA65_RS11855	0.49	-1.4
2,531,602	-		DZA65_RS11855	0.49	-0.2
2,531,628	+		DZA65_RS11855	0.53	+0.2
2,531,629	-		DZA65_RS11855	0.53	-0.2
2,531,641	+		DZA65_RS11855	0.55	+0.4
2,531,743	+				+1.2
2,531,743	+		DZA65_RS11855	0.72	+0.2
2,531,744	-		DZA65_RS11855	0.72	+0.2
2,531,744	-		DZA65_RS11855	0.72	-1.1
2,531,749	+		DZA65_RS11855	0.73	+1.0
2,531,759	-		DZA65_RS11855	0.74	-0.8
2,531,778	+		DZA65_RS11855	0.77	+0.5
2,531,780	+		DZA65_RS11855	0.78	+0.1
2,531,780	+		DZA65_RS11855	0.78	+0.6
2,531,780	+		DZA65_RS11855	0.78	+0.5
2,531,780	+		DZA65_RS11855	0.78	-0.5
2,531,780	+		DZA65_RS11855	0.78	+0.4
2,531,781	-		DZA65_RS11855	0.78	-2.8
2,531,781	-		DZA65_RS11855	0.78	-1.3
2,531,781	-		DZA65_RS11855	0.78	-0.2
2,531,781	-		DZA65_RS11855	0.78	+0.9
2,531,781	-		DZA65_RS11855	0.78	-0.2
2,531,781	-		DZA65_RS11855	0.78	-1.2
2,531,802	+		DZA65_RS11855	0.81	+0.7
2,531,802	+		DZA65_RS11855	0.81	+0.1
2,531,802	+		DZA65_RS11855	0.81	-0.2
2,531,803	-		DZA65_RS11855	0.81	+1.2
2,531,853	-		DZA65_RS11855	0.89	+1.6
2,531,857	+		DZA65_RS11855	0.90	-0.8
2,531,857	+		DZA65_RS11855	0.90	-0.8
2,531,907	+				-0.4
2,531,907	+				+0.3
2,531,908	-				+0.8
2,531,908	-				+0.2
2,531,918	+				+0.7
2,531,919	-				-0.4
2,531,919	-				-0.1
2,531,947	+				-1.1
2,531,947	+				+1.2
2,531,947	+				-0.0
2,531,947	+				-0.3
2,531,948	-				-0.6
2,531,948	-				-0.3
2,532,159	-		DZA65_RS11860	0.54	+2.0
2,532,295	+		DZA65_RS11860	0.83	-1.5
2,532,296	-		DZA65_RS11860	0.83	+0.4
2,532,300	+		DZA65_RS11860	0.84	-1.4
2,532,301	-		DZA65_RS11860	0.85	+0.2
2,532,301	-		DZA65_RS11860	0.85	-1.2
2,532,301	-		DZA65_RS11860	0.85	-0.2
2,532,301	-		DZA65_RS11860	0.85	-1.4
2,532,325	+		DZA65_RS11860	0.90	+0.2
2,532,326	-				+0.1
2,532,326	-				+1.0
2,532,329	+				+1.6
2,532,329	+				+2.0
2,532,329	+				-0.2
2,532,329	+				+0.8
2,532,330	-				+1.2
2,532,330	-				-0.2
2,532,330	-				+0.2
2,532,330	-				-0.7
2,532,330	-				+0.9
2,532,330	-				+0.2
2,532,330	-				-0.2
2,532,330	-				-0.4
2,532,331	+				+1.8
2,532,331	+				-0.4
2,532,331	+				-0.3
2,532,332	-				+0.2
2,532,332	-				+0.4
2,532,368	-				-0.6
2,532,368	-				-1.8
2,532,368	-				-1.4
2,532,485	+				+0.2
2,532,486	-				-0.8
2,532,486	-				-0.6
2,532,487	+				+0.0
2,532,487	+				-0.2
2,532,487	+				-0.4
2,532,487	+				-1.1
2,532,487	+				-0.5
2,532,487	+				+0.7
2,532,490	+				-0.7
2,532,490	+				+0.6
2,532,493	+				+0.3
2,532,494	-				-0.1
2,532,518	+				+1.2
2,532,519	-				+0.4
2,532,520	+				+0.5
2,532,520	+				+0.8
2,532,521	-				+1.8
2,532,521	-				-0.1
2,532,521	-				-1.0
2,532,521	-				-0.5
2,532,521	-				+1.2
2,532,521	-				-0.1
2,532,521	-				-1.6
2,532,521	-				+0.4
2,532,528	+				-0.6
2,532,528	+				+0.2
2,532,528	+				+2.2
2,532,542	-				-0.2
2,532,569	+				-0.8
2,532,570	-				-2.1
2,532,706	-		DZA65_RS11865	0.13	-0.2
2,533,030	-		DZA65_RS11865	0.42	-1.2
2,533,201	-		DZA65_RS11865	0.58	-2.2
2,533,275	+		DZA65_RS11865	0.64	-2.6
2,533,344	+		DZA65_RS11865	0.70	-2.7
2,533,344	+		DZA65_RS11865	0.70	-2.1
2,533,381	-		DZA65_RS11865	0.74	-1.4
2,533,746	+				-1.4
2,533,746	+				-0.2
2,533,746	+				+0.0
2,533,746	+				-0.7
2,533,746	+				-0.0
2,533,746	+				-1.4
2,533,747	-				-0.9
2,533,747	-				-0.6
2,533,747	-				+0.5
2,533,747	-				+0.8
2,533,747	-				-0.0
2,533,747	-				+0.7
2,533,807	+				-2.4
2,533,807	+				+1.2
2,533,933	+				-0.4
2,533,933	+				-0.8
2,533,960	-				+1.2
2,533,960	-				-0.6
2,534,060	-				-0.7
2,534,070	+				+0.2
2,534,143	-		DZA65_RS11870	0.15	+0.5
2,534,154	-		DZA65_RS11870	0.17	+0.6
2,534,184	+		DZA65_RS11870	0.22	-0.1
2,534,184	+		DZA65_RS11870	0.22	-0.2
2,534,185	-		DZA65_RS11870	0.22	-0.2
2,534,227	-		DZA65_RS11870	0.28	-0.4
2,534,232	-		DZA65_RS11870	0.29	-0.4
2,534,259	+		DZA65_RS11870	0.33	-0.9
2,534,262	-		DZA65_RS11870	0.34	-0.6
2,534,262	-		DZA65_RS11870	0.34	+0.4
2,534,262	-		DZA65_RS11870	0.34	-0.6
2,534,306	-		DZA65_RS11870	0.41	-2.6
2,534,307	+		DZA65_RS11870	0.41	+0.7
2,534,307	+		DZA65_RS11870	0.41	+0.7
2,534,308	-		DZA65_RS11870	0.41	-0.3
2,534,308	-		DZA65_RS11870	0.41	-0.3
2,534,308	-		DZA65_RS11870	0.41	-0.6
2,534,308	-		DZA65_RS11870	0.41	+0.4
2,534,308	-		DZA65_RS11870	0.41	+0.9
2,534,410	+		DZA65_RS11870	0.57	+0.1
2,534,411	-		DZA65_RS11870	0.58	+0.5
2,534,437	-		DZA65_RS11870	0.62	-3.0
2,534,455	+		DZA65_RS11870	0.64	-0.6
2,534,456	-		DZA65_RS11870	0.65	-1.1
2,534,456	-		DZA65_RS11870	0.65	-0.1
2,534,456	-		DZA65_RS11870	0.65	-1.4
2,534,456	-		DZA65_RS11870	0.65	-0.6
2,534,456	-		DZA65_RS11870	0.65	+0.3
2,534,456	-		DZA65_RS11870	0.65	+1.3
2,534,456	-		DZA65_RS11870	0.65	-0.6
2,534,456	-		DZA65_RS11870	0.65	-1.4
2,534,456	-		DZA65_RS11870	0.65	-2.6
2,534,487	+		DZA65_RS11870	0.70	+2.0