Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11715

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,498,670	+		DZA65_RS11705	0.84	+0.4
2,498,751	-				-1.0
2,498,751	-				-0.2
2,498,812	-				-0.3
2,498,812	-				+0.2
2,498,812	-				-1.4
2,498,819	+				-1.0
2,498,820	-				-3.3
2,498,829	+				-1.3
2,498,830	-				+0.1
2,498,849	+				-3.4
2,498,850	-				-0.4
2,498,931	+				+0.7
2,498,932	-				+0.1
2,498,936	+				-0.7
2,498,936	+				+0.3
2,498,936	+				-0.6
2,498,936	+				+0.7
2,498,936	+				-1.4
2,498,936	+				-1.2
2,498,937	-				+0.2
2,498,937	-				-1.4
2,498,937	-				-0.3
2,498,937	-				-0.8
2,498,937	-				+0.5
2,498,938	+				-0.8
2,498,938	+				-0.1
2,498,938	+				-0.4
2,498,938	+				-0.2
2,498,938	+				-0.0
2,498,938	+				-0.8
2,498,938	+				-2.8
2,498,939	-				-0.7
2,498,939	-				+0.6
2,498,939	-				+0.9
2,498,939	-				-0.1
2,498,939	-				-0.7
2,498,939	-				-0.3
2,498,939	-				+0.2
2,498,940	+				-0.0
2,498,940	+				-0.3
2,498,940	+				-1.1
2,498,940	+				-0.0
2,498,940	+				+0.4
2,498,940	+				-0.4
2,498,940	+				-0.2
2,498,940	+				-1.2
2,498,941	-				+0.5
2,498,941	-				-0.4
2,498,941	-				-0.8
2,498,941	-				-1.4
2,498,941	-				+1.2
2,498,941	-				-0.8
2,498,941	-				+1.4
2,498,941	-				-0.7
2,498,952	-				-0.2
2,498,998	-				+0.3
2,498,998	-				-1.2
2,498,998	-				-1.0
2,499,000	+				-0.3
2,499,001	-				+1.5
2,499,059	+		DZA65_RS11710	0.14	-0.1
2,499,059	+		DZA65_RS11710	0.14	-0.3
2,499,060	-		DZA65_RS11710	0.14	-0.4
2,499,108	-		DZA65_RS11710	0.29	+1.2
2,499,109	+		DZA65_RS11710	0.29	+0.7
2,499,109	+		DZA65_RS11710	0.29	+0.1
2,499,109	+		DZA65_RS11710	0.29	-1.0
2,499,109	+		DZA65_RS11710	0.29	-0.3
2,499,109	+		DZA65_RS11710	0.29	+1.6
2,499,109	+		DZA65_RS11710	0.29	-1.8
2,499,109	+		DZA65_RS11710	0.29	-0.4
2,499,110	-		DZA65_RS11710	0.29	-0.8
2,499,110	-		DZA65_RS11710	0.29	+0.4
2,499,110	-		DZA65_RS11710	0.29	-0.3
2,499,110	-		DZA65_RS11710	0.29	+0.6
2,499,110	-		DZA65_RS11710	0.29	+1.1
2,499,110	-		DZA65_RS11710	0.29	+0.0
2,499,110	-		DZA65_RS11710	0.29	+0.2
2,499,110	-		DZA65_RS11710	0.29	-3.0
2,499,178	+		DZA65_RS11710	0.50	+0.2
2,499,179	-		DZA65_RS11710	0.50	-0.4
2,499,179	-		DZA65_RS11710	0.50	+0.2
2,499,179	-		DZA65_RS11710	0.50	-0.5
2,499,179	-		DZA65_RS11710	0.50	-1.8
2,499,179	-		DZA65_RS11710	0.50	-0.2
2,499,215	+		DZA65_RS11710	0.61	-0.1
2,499,256	-		DZA65_RS11710	0.73	+0.1
2,499,256	-		DZA65_RS11710	0.73	-2.2
2,499,256	-		DZA65_RS11710	0.73	-2.4
2,499,330	-				+1.5
2,499,334	+				-1.3
2,499,335	-				-1.3
2,499,335	-				-0.4
2,499,355	+				+0.8
2,499,363	+				+1.3
2,499,363	+				+1.9
2,499,364	-				-0.0
2,499,364	-				-0.1
2,499,393	-				+0.5
2,499,405	-				-0.8
2,499,405	-				+0.0
2,499,408	+				-1.0
2,499,409	-				+0.9
2,499,409	-				-3.4
2,499,419	+				-0.8
2,499,419	+				+0.2
2,499,420	-				-0.0
2,499,423	-				+0.3
2,499,423	-				+0.7
2,499,445	+				+0.2
2,499,446	-				-2.4
2,499,450	+				-0.5
2,499,527	+				-0.4
2,499,527	+				-0.4
2,499,528	-				-1.5
2,499,528	-				-1.1
2,499,528	-				-1.7
2,499,622	+				-1.8
2,499,623	-				-2.3
2,499,664	+				-0.0
2,499,665	-				-0.2
2,499,782	+		DZA65_RS11715	0.14	-0.7
2,499,783	-		DZA65_RS11715	0.14	-0.4
2,499,783	-		DZA65_RS11715	0.14	-0.8
2,499,783	-		DZA65_RS11715	0.14	-1.2
2,499,783	-		DZA65_RS11715	0.14	-2.8
2,499,878	+		DZA65_RS11715	0.25	-1.4
2,499,879	-		DZA65_RS11715	0.25	-1.0
2,499,879	-		DZA65_RS11715	0.25	-0.8
2,499,879	-		DZA65_RS11715	0.25	-3.5
2,499,913	+		DZA65_RS11715	0.29	+0.2
2,499,953	+		DZA65_RS11715	0.34	+0.0
2,499,980	+		DZA65_RS11715	0.37	-0.4
2,499,980	+		DZA65_RS11715	0.37	-1.3
2,499,980	+		DZA65_RS11715	0.37	-1.7
2,499,980	+		DZA65_RS11715	0.37	+0.4
2,499,980	+		DZA65_RS11715	0.37	-2.7
2,499,980	+		DZA65_RS11715	0.37	-0.8
2,499,981	-		DZA65_RS11715	0.37	-2.1
2,499,981	-		DZA65_RS11715	0.37	-1.5
2,499,981	-		DZA65_RS11715	0.37	-0.6
2,499,981	-		DZA65_RS11715	0.37	-1.1
2,500,012	+		DZA65_RS11715	0.41	-0.8
2,500,046	+		DZA65_RS11715	0.45	+0.2
2,500,046	+		DZA65_RS11715	0.45	+0.3
2,500,046	+		DZA65_RS11715	0.45	+0.4
2,500,046	+		DZA65_RS11715	0.45	+1.0
2,500,046	+		DZA65_RS11715	0.45	+0.2
2,500,046	+		DZA65_RS11715	0.45	+0.6
2,500,046	+		DZA65_RS11715	0.45	+0.2
2,500,046	+		DZA65_RS11715	0.45	-0.3
2,500,047	-		DZA65_RS11715	0.45	-0.1
2,500,047	-		DZA65_RS11715	0.45	-1.1
2,500,047	-		DZA65_RS11715	0.45	-0.8
2,500,047	-		DZA65_RS11715	0.45	-1.4
2,500,049	+		DZA65_RS11715	0.46	-0.7
2,500,049	+		DZA65_RS11715	0.46	+0.4
2,500,050	-		DZA65_RS11715	0.46	-2.7
2,500,050	-		DZA65_RS11715	0.46	-0.2
2,500,050	-		DZA65_RS11715	0.46	-1.2
2,500,051	+		DZA65_RS11715	0.46	+0.5
2,500,051	+		DZA65_RS11715	0.46	+0.7
2,500,051	+		DZA65_RS11715	0.46	+0.9
2,500,052	-		DZA65_RS11715	0.46	-3.5
2,500,052	-		DZA65_RS11715	0.46	-2.7
2,500,163	+		DZA65_RS11715	0.59	+0.5
2,500,164	-		DZA65_RS11715	0.59	-3.3
2,500,164	-		DZA65_RS11715	0.59	-2.4
2,500,164	-		DZA65_RS11715	0.59	-0.3
2,500,165	+		DZA65_RS11715	0.59	-2.7
2,500,179	+		DZA65_RS11715	0.61	+0.2
2,500,179	+		DZA65_RS11715	0.61	+0.4
2,500,179	+		DZA65_RS11715	0.61	+2.0
2,500,179	+		DZA65_RS11715	0.61	-0.5
2,500,179	+		DZA65_RS11715	0.61	-1.4
2,500,179	+		DZA65_RS11715	0.61	+0.2
2,500,179	+		DZA65_RS11715	0.61	-0.0
2,500,180	-		DZA65_RS11715	0.61	-1.6
2,500,180	-		DZA65_RS11715	0.61	-2.8
2,500,180	-		DZA65_RS11715	0.61	-1.2
2,500,180	-		DZA65_RS11715	0.61	-1.4
2,500,180	-		DZA65_RS11715	0.61	-1.8
2,500,186	+		DZA65_RS11715	0.62	-0.4
2,500,186	+		DZA65_RS11715	0.62	-1.0
2,500,198	+		DZA65_RS11715	0.63	+0.6
2,500,198	+		DZA65_RS11715	0.63	-3.0
2,500,198	+		DZA65_RS11715	0.63	+0.2
2,500,199	-		DZA65_RS11715	0.63	-2.7
2,500,199	-		DZA65_RS11715	0.63	-3.2
2,500,199	-		DZA65_RS11715	0.63	-2.1
2,500,199	-		DZA65_RS11715	0.63	-2.4
2,500,199	-		DZA65_RS11715	0.63	-0.8
2,500,199	-		DZA65_RS11715	0.63	-1.8
2,500,202	-		DZA65_RS11715	0.64	-0.5
2,500,240	+		DZA65_RS11715	0.68	+0.6
2,500,240	+		DZA65_RS11715	0.68	-0.8
2,500,241	-		DZA65_RS11715	0.68	-0.8
2,500,280	+		DZA65_RS11715	0.73	-0.3
2,500,286	+		DZA65_RS11715	0.74	-0.4
2,500,287	-		DZA65_RS11715	0.74	-0.4
2,500,359	+		DZA65_RS11715	0.83	-0.4
2,500,360	-		DZA65_RS11715	0.83	-0.2
2,500,360	-		DZA65_RS11715	0.83	-1.3
2,500,411	-		DZA65_RS11715	0.89	-0.4
2,500,411	-		DZA65_RS11715	0.89	-1.4
2,500,411	-		DZA65_RS11715	0.89	-1.3
2,500,424	+				+1.2
2,500,425	-				-1.4
2,500,425	-				-0.8
2,500,432	+				-2.7
2,500,433	-				-3.0
2,500,433	-				-1.8
2,500,441	+				+1.3
2,500,442	-				-1.5
2,500,489	+				+1.3
2,500,497	+				+0.3
2,500,497	+				-0.7
2,500,497	+				-0.0
2,500,498	-				-0.2
2,500,498	-				-0.2
2,500,498	-				-2.0
2,500,510	+				-0.1
2,500,610	+				+0.2
2,500,611	-				-0.7
2,500,619	+				-1.9
2,500,619	+				-1.4
2,500,620	-				-2.2
2,500,640	+				-1.0
2,500,640	+				-1.7
2,500,641	-				-1.7
2,500,668	+				-2.4
2,500,685	+				-2.8
2,500,685	+				-1.5
2,500,685	+				-3.2
2,500,686	-				-1.3
2,500,686	-				-0.4
2,500,686	-				-1.3
2,500,686	-				-0.4
2,500,693	+				-0.6
2,500,694	-				-0.8
2,500,971	-		DZA65_RS11720	0.37	-2.4
2,501,105	+		DZA65_RS11720	0.55	-2.7
2,501,106	-		DZA65_RS11720	0.55	-1.4
2,501,112	-		DZA65_RS11720	0.56	-2.7
2,501,157	+		DZA65_RS11720	0.62	-1.6
2,501,157	+		DZA65_RS11720	0.62	-3.5
2,501,157	+		DZA65_RS11720	0.62	-1.3
2,501,157	+		DZA65_RS11720	0.62	-2.7
2,501,157	+		DZA65_RS11720	0.62	-1.7
2,501,157	+		DZA65_RS11720	0.62	+2.2
2,501,157	+		DZA65_RS11720	0.62	-1.4
2,501,158	-		DZA65_RS11720	0.62	-3.4
2,501,158	-		DZA65_RS11720	0.62	-0.4
2,501,158	-		DZA65_RS11720	0.62	-1.8
2,501,253	+		DZA65_RS11720	0.74	-1.2
2,501,254	-		DZA65_RS11720	0.75	-1.6
2,501,301	-		DZA65_RS11720	0.81	-2.8
2,501,301	-		DZA65_RS11720	0.81	-2.7
2,501,321	+		DZA65_RS11720	0.83	-1.4
2,501,397	+				-0.8
2,501,398	-				-0.5
2,501,399	+				-1.8
2,501,399	+				+0.2
2,501,399	+				-0.8
2,501,400	-				-2.2
2,501,400	-				-2.3
2,501,400	-				-0.4
2,501,400	-				+0.2
2,501,400	-				-2.2
2,501,401	+				-2.4
2,501,402	-				-0.1
2,501,402	-				-0.8
2,501,402	-				-3.2
2,501,409	+				-0.1
2,501,410	-				-2.2
2,501,412	-				-1.8