Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10950

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,315,324	+		DZA65_RS10945	0.19	-1.9
2,315,324	+		DZA65_RS10945	0.19	-1.9
2,315,324	+		DZA65_RS10945	0.19	+0.1
2,315,324	+		DZA65_RS10945	0.19	-2.3
2,315,324	+		DZA65_RS10945	0.19	-2.5
2,315,324	+		DZA65_RS10945	0.19	-1.5
2,315,325	-		DZA65_RS10945	0.19	-1.9
2,315,325	-		DZA65_RS10945	0.19	-2.5
2,315,325	-		DZA65_RS10945	0.19	-2.0
2,315,325	-		DZA65_RS10945	0.19	-1.7
2,315,325	-		DZA65_RS10945	0.19	-1.9
2,315,325	-		DZA65_RS10945	0.19	-0.3
2,315,325	-				-0.5
2,315,325	-		DZA65_RS10945	0.19	-2.2
2,315,397	+		DZA65_RS10945	0.25	-0.3
2,315,398	-		DZA65_RS10945	0.25	-1.5
2,315,402	+		DZA65_RS10945	0.25	-3.6
2,315,402	+		DZA65_RS10945	0.25	-0.2
2,315,402	+				-0.9
2,315,402	+		DZA65_RS10945	0.25	-3.5
2,315,403	-		DZA65_RS10945	0.25	+1.1
2,315,459	+		DZA65_RS10945	0.30	-2.2
2,315,459	+		DZA65_RS10945	0.30	-3.5
2,315,459	+				-1.5
2,315,459	+		DZA65_RS10945	0.30	-3.0
2,315,460	-		DZA65_RS10945	0.30	-2.0
2,315,460	-		DZA65_RS10945	0.30	-1.9
2,315,460	-		DZA65_RS10945	0.30	-1.0
2,315,460	-				-1.5
2,315,460	-		DZA65_RS10945	0.30	-2.2
2,315,460	-		DZA65_RS10945	0.30	-0.9
2,315,460	-		DZA65_RS10945	0.30	-0.7
2,315,460	-		DZA65_RS10945	0.30	-2.2
2,315,515	+		DZA65_RS10945	0.35	-3.0
2,315,515	+		DZA65_RS10945	0.35	-2.3
2,315,515	+		DZA65_RS10945	0.35	-2.5
2,315,516	-		DZA65_RS10945	0.35	-2.7
2,315,516	-				-1.9
2,315,738	+		DZA65_RS10945	0.53	-2.7
2,315,739	-		DZA65_RS10945	0.54	-3.5
2,315,753	+		DZA65_RS10945	0.55	-2.2
2,315,753	+		DZA65_RS10945	0.55	-1.7
2,315,754	-		DZA65_RS10945	0.55	-1.5
2,315,754	-		DZA65_RS10945	0.55	-0.7
2,315,754	-		DZA65_RS10945	0.55	-1.5
2,315,754	-		DZA65_RS10945	0.55	-1.3
2,315,897	+		DZA65_RS10945	0.67	-0.9
2,315,897	+		DZA65_RS10945	0.67	-4.1
2,315,897	+		DZA65_RS10945	0.67	-0.4
2,315,897	+		DZA65_RS10945	0.67	-3.1
2,315,897	+		DZA65_RS10945	0.67	-3.2
2,315,897	+		DZA65_RS10945	0.67	-1.0
2,315,897	+		DZA65_RS10945	0.67	-0.9
2,315,898	-		DZA65_RS10945	0.67	-3.0
2,315,898	-		DZA65_RS10945	0.67	-1.1
2,315,898	-		DZA65_RS10945	0.67	-0.5
2,316,023	-		DZA65_RS10945	0.77	-1.6
2,316,074	+		DZA65_RS10945	0.82	-2.6
2,316,074	+		DZA65_RS10945	0.82	-2.2
2,316,075	-		DZA65_RS10945	0.82	-1.2
2,316,075	-		DZA65_RS10945	0.82	-2.3
2,316,244	+				-1.7
2,316,244	+				-0.5
2,316,245	-				-1.5
2,316,248	+				-2.7
2,316,248	+				-2.2
2,316,248	+				-2.5
2,316,248	+				-2.5
2,316,249	-				-0.4
2,316,249	-				-1.5
2,316,249	-				-3.0
2,316,249	-				-1.5
2,316,249	-				-2.7
2,316,249	-				-2.2
2,316,249	-				-2.3
2,316,272	+				-1.5
2,316,279	+				+0.1
2,316,279	+				-3.3
2,316,279	+				-1.3
2,316,279	+				-0.9
2,316,279	+				-0.9
2,316,279	+				-1.1
2,316,279	+				-3.0
2,316,280	-				-0.7
2,316,280	-				+0.1
2,316,280	-				-1.7
2,316,283	+				-1.9
2,316,283	+				-2.6
2,316,283	+				-0.5
2,316,283	+				-1.9
2,316,284	-				-1.3
2,316,291	+				-2.9
2,316,291	+				-2.7
2,316,302	+				-2.5
2,316,302	+				-2.2
2,316,302	+				-4.1
2,316,302	+				-1.1
2,316,302	+				-2.0
2,316,302	+				+0.8
2,316,302	+				-3.5
2,316,302	+				-1.2
2,316,303	-				-2.5
2,316,307	+				-2.5
2,316,307	+				-2.2
2,316,307	+				-1.7
2,316,307	+				-0.6
2,316,308	-				+0.5
2,316,310	+				-2.2
2,316,310	+				-1.9
2,316,310	+				-1.5
2,316,341	+				-0.8
2,316,658	-		DZA65_RS10950	0.25	-1.2
2,316,693	+		DZA65_RS10950	0.28	-0.9
2,316,694	-		DZA65_RS10950	0.28	-1.0
2,316,762	+		DZA65_RS10950	0.33	-2.0
2,316,800	+		DZA65_RS10950	0.35	-1.5
2,316,801	-		DZA65_RS10950	0.35	-0.3
2,316,801	-		DZA65_RS10950	0.35	-1.3
2,317,006	+		DZA65_RS10950	0.50	-0.8
2,317,221	-		DZA65_RS10950	0.66	-2.2
2,317,262	+		DZA65_RS10950	0.69	-1.6
2,317,263	-		DZA65_RS10950	0.69	-1.0
2,317,307	-		DZA65_RS10950	0.72	-3.0
2,317,307	-		DZA65_RS10950	0.72	-1.5
2,317,307	-		DZA65_RS10950	0.72	-0.1
2,317,307	-		DZA65_RS10950	0.72	-0.5
2,317,309	+		DZA65_RS10950	0.72	-2.3
2,317,321	+		DZA65_RS10950	0.73	-1.5
2,317,321	+		DZA65_RS10950	0.73	-0.6
2,317,321	+		DZA65_RS10950	0.73	-2.5
2,317,321	+		DZA65_RS10950	0.73	-2.5
2,317,321	+		DZA65_RS10950	0.73	+0.5
2,317,321	+		DZA65_RS10950	0.73	-1.5
2,317,321	+		DZA65_RS10950	0.73	-2.3
2,317,321	+		DZA65_RS10950	0.73	-2.0
2,317,322	-		DZA65_RS10950	0.73	-2.0
2,317,331	-		DZA65_RS10950	0.74	-2.7
2,317,418	-		DZA65_RS10950	0.80	-1.5
2,317,418	-		DZA65_RS10950	0.80	-1.2
2,317,418	-		DZA65_RS10950	0.80	-1.6
2,317,454	-		DZA65_RS10950	0.83	-0.7
2,317,530	-		DZA65_RS10950	0.88	-1.5
2,317,541	+		DZA65_RS10950	0.89	-2.7
2,317,541	+		DZA65_RS10950	0.89	-2.2
2,317,542	-		DZA65_RS10950	0.89	-0.9
2,317,573	+				-0.6
2,317,596	+				-2.2
2,317,597	-				-1.9
2,317,677	+				+0.1
2,317,680	+				+0.4
2,317,681	-				-1.1
2,317,737	+				-1.1
2,317,737	+				-1.2
2,317,971	+		DZA65_RS10955	0.27	-1.0
2,318,161	+				-0.9
2,318,242	-		DZA65_RS10955	0.54	-1.3
2,318,264	+		DZA65_RS10955	0.56	-0.5
2,318,265	-		DZA65_RS10955	0.56	-0.9
2,318,308	+		DZA65_RS10955	0.61	-1.7
2,318,308	+		DZA65_RS10955	0.61	-0.7
2,318,309	-		DZA65_RS10955	0.61	+0.1
2,318,309	-		DZA65_RS10955	0.61	-0.9
2,318,309	-		DZA65_RS10955	0.61	-0.1
2,318,488	-		DZA65_RS10955	0.79	-3.2
2,318,488	-		DZA65_RS10955	0.79	-0.4
2,318,488	-		DZA65_RS10955	0.79	-1.0
2,318,677	-				+0.5