Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09330

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,967,294	+				+0.1
1,967,294	+				+2.0
1,967,295	-				+1.1
1,967,437	-		DZA65_RS09325	0.16	+0.5
1,967,437	-		DZA65_RS09325	0.16	+2.2
1,967,437	-		DZA65_RS09325	0.16	-1.2
1,967,725	+		DZA65_RS09325	0.45	-0.3
1,967,847	+		DZA65_RS09325	0.57	-1.1
1,967,848	-		DZA65_RS09325	0.57	-1.0
1,967,875	-		DZA65_RS09325	0.60	+0.6
1,967,875	-		DZA65_RS09325	0.60	-0.2
1,967,875	-		DZA65_RS09325	0.60	-0.8
1,967,917	-		DZA65_RS09325	0.64	-0.5
1,967,968	+		DZA65_RS09325	0.69	-0.0
1,967,968	+		DZA65_RS09325	0.69	-2.4
1,967,968	+		DZA65_RS09325	0.69	+0.7
1,967,969	-		DZA65_RS09325	0.69	+1.8
1,967,969	-		DZA65_RS09325	0.69	-1.2
1,967,969	-		DZA65_RS09325	0.69	+0.5
1,967,969	-		DZA65_RS09325	0.69	+1.0
1,967,969	-		DZA65_RS09325	0.69	-0.5
1,967,969	-		DZA65_RS09325	0.69	-1.8
1,967,969	-		DZA65_RS09325	0.69	+0.6
1,967,969	-		DZA65_RS09325	0.69	-0.8
1,967,969	-		DZA65_RS09325	0.69	-0.4
1,967,969	-		DZA65_RS09325	0.69	-0.8
1,967,969	-		DZA65_RS09325	0.69	+0.2
1,967,969	-		DZA65_RS09325	0.69	+1.0
1,967,969	-		DZA65_RS09325	0.69	+1.0
1,967,969	-		DZA65_RS09325	0.69	+1.5
1,967,969	-		DZA65_RS09325	0.69	-1.2
1,968,031	+		DZA65_RS09325	0.76	-1.4
1,968,031	+		DZA65_RS09325	0.76	+0.0
1,968,031	+		DZA65_RS09325	0.76	+0.6
1,968,031	+		DZA65_RS09325	0.76	+0.2
1,968,166	-		DZA65_RS09325	0.89	-0.1
1,968,224	+				-1.8
1,968,224	+				-0.4
1,968,225	-				+0.2
1,968,290	-				-1.0
1,968,308	+				+1.1
1,968,311	+				+1.0
1,968,503	-		DZA65_RS09330	0.25	-2.1
1,968,572	+		DZA65_RS09330	0.32	-0.9
1,968,638	+		DZA65_RS09330	0.39	-0.4
1,968,639	-		DZA65_RS09330	0.39	+0.4
1,968,754	+		DZA65_RS09330	0.51	-0.2
1,968,754	+		DZA65_RS09330	0.51	-0.0
1,968,755	-		DZA65_RS09330	0.51	-0.8
1,968,887	+		DZA65_RS09330	0.64	+0.9
1,968,888	-		DZA65_RS09330	0.64	+0.3
1,968,888	-		DZA65_RS09330	0.64	+0.0
1,968,888	-		DZA65_RS09330	0.64	-1.1
1,968,895	+		DZA65_RS09330	0.65	+0.7
1,968,895	+		DZA65_RS09330	0.65	-0.9
1,968,895	+		DZA65_RS09330	0.65	+0.0
1,968,896	-		DZA65_RS09330	0.65	-0.5
1,968,896	-		DZA65_RS09330	0.65	+0.8
1,968,925	+		DZA65_RS09330	0.68	-0.5
1,968,925	+		DZA65_RS09330	0.68	-0.8
1,968,950	+		DZA65_RS09330	0.71	+1.6
1,968,950	+		DZA65_RS09330	0.71	-1.1
1,968,950	+		DZA65_RS09330	0.71	+0.2
1,968,950	+		DZA65_RS09330	0.71	-2.6
1,968,950	+		DZA65_RS09330	0.71	+0.1
1,968,950	+		DZA65_RS09330	0.71	+0.4
1,968,950	+		DZA65_RS09330	0.71	+0.5
1,968,950	+		DZA65_RS09330	0.71	+0.1
1,968,950	+		DZA65_RS09330	0.71	+0.2
1,968,950	+		DZA65_RS09330	0.71	-2.6
1,968,951	-		DZA65_RS09330	0.71	-0.5
1,968,951	-		DZA65_RS09330	0.71	+1.7
1,968,951	-		DZA65_RS09330	0.71	-1.7
1,968,951	-		DZA65_RS09330	0.71	-0.0
1,968,951	-		DZA65_RS09330	0.71	+1.0
1,968,951	-		DZA65_RS09330	0.71	-1.9
1,968,951	-		DZA65_RS09330	0.71	+0.8
1,968,951	-		DZA65_RS09330	0.71	-0.8
1,968,992	+		DZA65_RS09330	0.75	+0.2
1,968,992	+		DZA65_RS09330	0.75	-0.2
1,968,992	+		DZA65_RS09330	0.75	+0.5
1,968,992	+		DZA65_RS09330	0.75	+0.5
1,968,992	+		DZA65_RS09330	0.75	-0.6
1,968,992	+				-0.8
1,968,992	+		DZA65_RS09330	0.75	-1.5
1,968,992	+		DZA65_RS09330	0.75	-0.8
1,968,992	+		DZA65_RS09330	0.75	+0.1
1,968,992	+		DZA65_RS09330	0.75	-1.6
1,968,992	+		DZA65_RS09330	0.75	-1.2
1,968,993	-		DZA65_RS09330	0.75	+0.2
1,968,993	-		DZA65_RS09330	0.75	+1.2
1,968,993	-		DZA65_RS09330	0.75	-0.5
1,968,993	-		DZA65_RS09330	0.75	+0.4
1,968,993	-		DZA65_RS09330	0.75	-1.4
1,968,993	-		DZA65_RS09330	0.75	-0.4
1,969,013	+		DZA65_RS09330	0.77	-0.3
1,969,014	-		DZA65_RS09330	0.77	-0.4
1,969,014	-		DZA65_RS09330	0.77	+0.1
1,969,121	+		DZA65_RS09330	0.88	-0.5
1,969,121	+		DZA65_RS09330	0.88	+0.0
1,969,121	+		DZA65_RS09330	0.88	-0.4
1,969,121	+		DZA65_RS09330	0.88	-0.2
1,969,121	+		DZA65_RS09330	0.88	-1.4
1,969,121	+		DZA65_RS09330	0.88	-1.0
1,969,122	-		DZA65_RS09330	0.88	-0.6
1,969,348	+				-0.4
1,969,349	-				+1.2
1,969,349	-				+0.0
1,969,364	+				-0.0
1,969,364	+				+0.6
1,969,364	+				+0.4
1,969,364	+				-0.4
1,969,365	-				-0.3
1,969,365	-				+0.4
1,969,368	-				-0.4
1,969,368	-				-0.6
1,969,379	+				+0.2
1,969,467	+		DZA65_RS09335	0.33	+0.0
1,969,467	+		DZA65_RS09335	0.33	-0.1
1,969,467	+		DZA65_RS09335	0.33	+0.5
1,969,520	-		DZA65_RS09335	0.47	-2.0
1,969,520	-		DZA65_RS09335	0.47	+0.1
1,969,520	-		DZA65_RS09335	0.47	+0.2
1,969,571	+		DZA65_RS09335	0.61	-0.8
1,969,572	-		DZA65_RS09335	0.61	-2.1
1,969,572	-		DZA65_RS09335	0.61	-0.2
1,969,573	+		DZA65_RS09335	0.62	+0.0
1,969,729	-				-0.1
1,969,729	-				+2.0
1,969,729	-				-0.5
1,969,738	+				+0.2
1,969,738	+				-1.4
1,969,739	-				+1.1
1,969,739	-				-1.5
1,969,759	+				-1.1
1,969,769	+				-0.1
1,969,803	-				-0.5
1,969,814	+				+0.9
1,969,815	-				+0.5
1,969,848	+				+1.2
1,969,859	+				-1.4
1,969,859	+				-0.4
1,969,915	-				+0.6
1,969,937	-				+0.6
1,969,974	+				+1.2
1,969,975	-				+0.6
1,969,982	-				+0.6
1,969,985	+				+0.0
1,970,001	+				-0.3
1,970,001	+				-0.7
1,970,002	-				+0.4
1,970,024	+				+0.3
1,970,057	+				-2.9
1,970,080	+				-1.8
1,970,081	-				-0.8
1,970,100	+				+0.9
1,970,155	-				-0.0
1,970,170	-				+1.4
1,970,225	+				-0.3