Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09115

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,919,671	+		DZA65_RS09110	0.51	-1.1
1,919,671	+		DZA65_RS09110	0.51	-0.0
1,919,671	+		DZA65_RS09110	0.51	-1.1
1,919,671	+		DZA65_RS09110	0.51	-0.0
1,919,671	+		DZA65_RS09110	0.51	-0.7
1,919,671	+		DZA65_RS09110	0.51	-0.2
1,919,671	+		DZA65_RS09110	0.51	-0.5
1,919,672	-		DZA65_RS09110	0.51	+0.1
1,919,672	-		DZA65_RS09110	0.51	-1.3
1,919,672	-		DZA65_RS09110	0.51	-0.4
1,919,672	-		DZA65_RS09110	0.51	-0.2
1,919,672	-		DZA65_RS09110	0.51	-1.0
1,919,672	-		DZA65_RS09110	0.51	-0.3
1,919,796	-		DZA65_RS09110	0.59	+0.9
1,919,810	+		DZA65_RS09110	0.60	+0.1
1,919,869	+		DZA65_RS09110	0.63	+0.3
1,919,870	-		DZA65_RS09110	0.63	+0.8
1,919,870	-		DZA65_RS09110	0.63	-0.3
1,919,898	+		DZA65_RS09110	0.65	+1.0
1,919,898	+		DZA65_RS09110	0.65	-0.2
1,919,899	-		DZA65_RS09110	0.65	+0.7
1,919,899	-		DZA65_RS09110	0.65	-1.2
1,919,899	-		DZA65_RS09110	0.65	-1.6
1,919,899	-		DZA65_RS09110	0.65	-2.7
1,919,904	+		DZA65_RS09110	0.66	+1.8
1,919,905	-		DZA65_RS09110	0.66	+1.7
1,919,997	+		DZA65_RS09110	0.71	+0.3
1,919,997	+		DZA65_RS09110	0.71	-0.5
1,919,997	+		DZA65_RS09110	0.71	-2.3
1,919,998	-		DZA65_RS09110	0.71	-0.0
1,919,998	-		DZA65_RS09110	0.71	+1.0
1,920,093	+		DZA65_RS09110	0.77	+1.8
1,920,094	-		DZA65_RS09110	0.77	-2.7
1,920,189	-		DZA65_RS09110	0.83	+0.1
1,920,248	+		DZA65_RS09110	0.87	+0.7
1,920,249	-		DZA65_RS09110	0.87	-0.5
1,920,249	-		DZA65_RS09110	0.87	-0.5
1,920,258	-		DZA65_RS09110	0.88	+1.8
1,920,301	+				+0.3
1,920,301	+				-0.1
1,920,301	+				+0.1
1,920,301	+				-1.1
1,920,301	+				-1.6
1,920,301	+				+1.0
1,920,302	-				-1.3
1,920,302	-				+2.6
1,920,302	-				-0.3
1,920,302	-				-0.9
1,920,302	-				-0.5
1,920,302	-				+0.3
1,920,302	-				-0.8
1,920,302	-				-0.0
1,920,302	-				-0.3
1,920,510	-				+1.4
1,920,519	-				+0.2
1,920,519	-				+1.4
1,920,519	-				-3.1
1,920,596	+				+2.3
1,920,597	-				-1.1
1,920,597	-				-0.5
1,920,597	-				-1.2
1,920,615	+				-2.1
1,920,615	+				-0.0
1,920,616	-				+1.3
1,920,630	+				+0.3
1,920,630	+				+1.4
1,920,630	+				+0.5
1,920,630	+				-0.2
1,920,630	+				-0.5
1,920,631	-				+1.3
1,920,631	-				+1.6
1,920,631	-				+0.1
1,920,641	+				-1.0
1,920,642	-				-1.3
1,920,706	+				+0.6
1,920,707	-				-0.3
1,920,707	-				-0.4
1,920,707	-				-0.0
1,920,707	-				+0.3
1,920,707	-				-0.0
1,920,713	+				-0.3
1,920,713	+				-0.1
1,920,713	+				+1.1
1,920,713	+				+1.1
1,920,713	+				+1.1
1,920,713	+				-0.1
1,920,713	+				+1.4
1,920,713	+				+1.1
1,920,713	+				-1.0
1,920,713	+				-1.6
1,920,714	-				-0.2
1,920,714	-				+0.3
1,920,714	-				+0.8
1,920,714	-				-0.0
1,920,714	-				-1.7
1,920,714	-				-0.6
1,920,714	-				+2.3
1,920,714	-				-0.3
1,920,714	-				+0.3
1,920,714	-				-1.2
1,920,714	-				+1.7
1,920,714	-				+0.4
1,920,769	+		DZA65_RS09115	0.15	+1.0
1,920,769	+		DZA65_RS09115	0.15	+2.3
1,920,769	+		DZA65_RS09115	0.15	+0.3
1,920,769	+		DZA65_RS09115	0.15	-0.8
1,920,989	-		DZA65_RS09115	0.38	+0.6
1,921,266	+		DZA65_RS09115	0.68	-0.1
1,921,267	-		DZA65_RS09115	0.68	+1.4
1,921,267	-		DZA65_RS09115	0.68	+0.5
1,921,267	-				-0.7
1,921,345	+		DZA65_RS09115	0.76	-0.7
1,921,359	+		DZA65_RS09115	0.78	-0.3
1,921,360	-		DZA65_RS09115	0.78	-0.9
1,921,360	-		DZA65_RS09115	0.78	-1.2
1,921,396	+		DZA65_RS09115	0.82	-0.1
1,921,396	+		DZA65_RS09115	0.82	-0.3
1,921,396	+		DZA65_RS09115	0.82	+1.3
1,921,397	-		DZA65_RS09115	0.82	-0.3
1,921,397	-		DZA65_RS09115	0.82	-0.1
1,921,397	-		DZA65_RS09115	0.82	-0.9
1,921,397	-				-2.1
1,921,432	+		DZA65_RS09115	0.86	+0.7
1,921,432	+		DZA65_RS09115	0.86	+1.1
1,921,433	-		DZA65_RS09115	0.86	+0.1
1,921,433	-		DZA65_RS09115	0.86	+0.8
1,921,433	-		DZA65_RS09115	0.86	+1.1
1,921,433	-		DZA65_RS09115	0.86	-0.4
1,921,433	-		DZA65_RS09115	0.86	-3.0
1,921,433	-		DZA65_RS09115	0.86	-0.3
1,921,480	+				+0.6
1,921,480	+				+0.9
1,921,480	+				-1.1
1,921,481	-				+0.7
1,921,481	-				-0.6
1,921,537	-				-0.4
1,921,572	+				-2.3
1,921,673	+				+2.7
1,921,673	+				+0.3
1,921,674	-				-0.9
1,921,674	-				-1.4
1,921,689	+				-0.5
1,921,689	+				+0.3
1,921,690	-				+0.3
1,921,690	-				-0.5
1,921,690	-				-1.9
1,921,690	-				-0.7
1,921,708	+				-1.9
1,921,709	-				-0.7
1,921,725	+				+1.7
1,921,742	+				+0.3
1,921,742	+				-0.2
1,921,761	+				-1.6
1,921,772	-				+1.3
1,921,772	-				-0.3
1,921,811	+				-0.0
1,921,811	+				-1.3
1,921,812	-				-0.7
1,921,812	-				-0.4
1,921,812	-				-1.3
1,921,825	-				+1.5
1,921,825	-				-0.2
1,921,828	+				+1.6
1,921,828	+				-1.3
1,921,828	+				-0.1
1,921,829	-				-2.7
1,921,829	-				-0.0
1,921,829	-				-0.2
1,921,830	+				-2.6
1,921,830	+				-1.0
1,921,830	+				-0.3
1,921,830	+				+1.4
1,921,831	-				+1.1
1,921,831	-				+0.6
1,921,831	-				+0.6
1,921,831	-				-0.7
1,921,832	+				+0.6
1,921,832	+				+1.0
1,921,832	+				-0.0
1,921,832	+				+1.6
1,921,832	+				-0.8
1,921,833	-				+0.7
1,921,833	-				-0.2
1,921,885	-				+0.4
1,921,892	+				+1.0
1,921,910	-				+0.2
1,922,021	+				+0.1
1,922,021	+				-1.3
1,922,035	-				+0.1
1,922,039	-				+0.8
1,922,073	+				+3.7
1,922,073	+				+0.9
1,922,074	-				+0.2
1,922,074	-				+0.2
1,922,074	-				-0.5
1,922,134	+				+0.4
1,922,134	+				+0.1
1,922,135	-				-2.9
1,922,135	-				-0.3
1,922,196	+				+1.6
1,922,196	+				-1.1
1,922,196	+				-0.5
1,922,253	-				+1.0
1,922,256	-				+0.4
1,922,317	+				+0.5
1,922,318	-				-0.5
1,922,318	-				-0.8
1,922,383	+				+0.5
1,922,383	+				+0.5
1,922,383	+				-0.6
1,922,383	+				-0.8
1,922,383	+				-1.3
1,922,384	-				-1.3
1,922,415	+		DZA65_RS09120	0.10	+0.7
1,922,491	+		DZA65_RS09120	0.24	-2.8
1,922,491	+		DZA65_RS09120	0.24	+0.5
1,922,491	+		DZA65_RS09120	0.24	-0.8
1,922,491	+		DZA65_RS09120	0.24	-0.6
1,922,491	+		DZA65_RS09120	0.24	-0.5
1,922,492	-		DZA65_RS09120	0.25	-1.4
1,922,492	-		DZA65_RS09120	0.25	+0.6
1,922,530	-		DZA65_RS09120	0.32	-0.2
1,922,541	-		DZA65_RS09120	0.34	+0.5