Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08780

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,856,854	+				+0.3
1,856,854	+				+1.5
1,856,854	+				-1.6
1,856,854	+				-0.0
1,856,854	+				+1.3
1,856,855	-				+0.9
1,856,855	-				+1.4
1,856,860	+				-1.1
1,856,860	+				+1.7
1,856,860	+				-0.1
1,856,861	-				-0.9
1,856,884	+				-0.7
1,856,905	+				+0.5
1,856,905	+				+0.3
1,856,905	+				-1.8
1,856,905	+				+2.0
1,856,905	+				+1.0
1,856,905	+				-0.6
1,856,906	-				-0.7
1,856,906	-				+0.2
1,856,906	-				+0.3
1,856,911	+				-0.5
1,856,911	+				+0.3
1,856,911	+				+0.5
1,856,911	+				-2.3
1,856,911	+				-0.4
1,856,911	+				-0.8
1,856,911	+				+0.9
1,856,911	+				+0.9
1,856,911	+				-0.4
1,856,912	-				-0.3
1,856,912	-				+0.4
1,856,912	-				-0.7
1,856,912	-				+1.0
1,856,912	-				-0.7
1,856,942	+				+0.0
1,856,942	+				-0.7
1,857,045	+				-0.3
1,857,045	+				+0.3
1,857,096	+				+0.3
1,857,096	+		DZA65_RS08775	0.17	+0.6
1,857,096	+		DZA65_RS08775	0.17	+0.3
1,857,096	+		DZA65_RS08775	0.17	-1.7
1,857,096	+		DZA65_RS08775	0.17	+2.1
1,857,096	+		DZA65_RS08775	0.17	-0.3
1,857,096	+		DZA65_RS08775	0.17	+0.9
1,857,096	+		DZA65_RS08775	0.17	+0.1
1,857,096	+		DZA65_RS08775	0.17	+0.9
1,857,096	+		DZA65_RS08775	0.17	+1.7
1,857,096	+		DZA65_RS08775	0.17	-0.1
1,857,097	-		DZA65_RS08775	0.17	+0.5
1,857,097	-		DZA65_RS08775	0.17	-0.4
1,857,097	-		DZA65_RS08775	0.17	-1.1
1,857,097	-		DZA65_RS08775	0.17	+1.1
1,857,097	-		DZA65_RS08775	0.17	+1.1
1,857,097	-		DZA65_RS08775	0.17	+0.6
1,857,098	+		DZA65_RS08775	0.17	+1.2
1,857,098	+		DZA65_RS08775	0.17	-0.7
1,857,098	+		DZA65_RS08775	0.17	-0.0
1,857,098	+		DZA65_RS08775	0.17	+0.8
1,857,099	-		DZA65_RS08775	0.17	-0.2
1,857,099	-		DZA65_RS08775	0.17	-1.1
1,857,138	-		DZA65_RS08775	0.23	+1.4
1,857,257	+		DZA65_RS08775	0.43	+1.0
1,857,257	+		DZA65_RS08775	0.43	+0.5
1,857,257	+		DZA65_RS08775	0.43	+2.3
1,857,257	+		DZA65_RS08775	0.43	-0.1
1,857,257	+		DZA65_RS08775	0.43	-0.5
1,857,258	-		DZA65_RS08775	0.43	-0.1
1,857,258	-		DZA65_RS08775	0.43	+0.9
1,857,258	-		DZA65_RS08775	0.43	-0.7
1,857,258	-		DZA65_RS08775	0.43	-0.0
1,857,258	-		DZA65_RS08775	0.43	+0.1
1,857,258	-		DZA65_RS08775	0.43	-1.5
1,857,317	+		DZA65_RS08775	0.52	-1.1
1,857,374	+		DZA65_RS08775	0.61	-0.1
1,857,453	+		DZA65_RS08775	0.74	-2.1
1,857,453	+		DZA65_RS08775	0.74	-0.1
1,857,454	-		DZA65_RS08775	0.74	+0.4
1,857,477	+		DZA65_RS08775	0.78	-0.4
1,857,478	-		DZA65_RS08775	0.78	+1.0
1,857,478	-		DZA65_RS08775	0.78	-0.7
1,857,594	+				-1.3
1,857,594	+				-0.1
1,857,594	+				-1.0
1,857,594	+				-0.2
1,857,595	-				+2.9
1,857,613	+				+0.8
1,857,613	+				+0.7
1,857,613	+				-0.5
1,857,619	+				-0.1
1,857,619	+				+0.1
1,857,619	+				-0.1
1,857,619	+				-0.5
1,857,619	+				+0.9
1,857,620	-				-0.4
1,857,620	-				+0.4
1,857,620	-				+0.4
1,857,620	-				+0.9
1,857,620	-				+1.3
1,857,620	-				+0.4
1,857,620	-				-0.1
1,857,703	+				+0.5
1,857,703	+				-0.7
1,857,703	+				-0.1
1,857,704	-				-0.7
1,857,704	-				-0.3
1,857,704	-				+1.1
1,857,704	-				+0.6
1,857,704	-				+0.6
1,857,705	+				+0.9
1,857,705	+				+1.1
1,857,705	+				+0.8
1,857,705	+				-1.7
1,857,705	+				-0.5
1,857,705	+				-0.5
1,857,705	+				-0.0
1,857,705	+				+1.3
1,857,705	+				+0.8
1,857,705	+				+0.3
1,857,706	-				+0.9
1,857,706	-				-3.6
1,857,706	-				-0.4
1,857,706	-				-0.7
1,857,706	-				-0.5
1,857,706	-				-0.2
1,857,706	-				-0.5
1,857,706	-				-1.5
1,857,706	-				-1.1
1,857,706	-				-0.1
1,857,706	-				-0.5
1,857,717	+				+0.3
1,857,717	+				-0.0
1,857,717	+				-0.7
1,857,840	+				+0.5
1,857,840	+				-2.7
1,857,840	+				-2.1
1,857,840	+				-0.5
1,857,840	+				+0.1
1,857,840	+				-0.4
1,857,841	-				-1.1
1,857,841	-				+1.5
1,857,841	-				-1.3
1,857,841	-				-0.2
1,857,841	-				-1.3
1,857,841	-				-0.5
1,857,841	-				-1.3
1,857,859	+				+1.0
1,857,859	+				+0.5
1,857,859	+				+1.3
1,857,859	+				+3.2
1,857,860	-				+0.3
1,857,860	-				+2.3
1,857,919	+		DZA65_RS08780	0.19	+0.5
1,857,919	+		DZA65_RS08780	0.19	+0.4
1,857,919	+		DZA65_RS08780	0.19	+0.3
1,857,919	+		DZA65_RS08780	0.19	+1.8
1,857,919	+		DZA65_RS08780	0.19	-1.2
1,857,920	-		DZA65_RS08780	0.20	-1.5
1,857,920	-		DZA65_RS08780	0.20	-1.2
1,857,920	-		DZA65_RS08780	0.20	+0.3
1,857,920	-		DZA65_RS08780	0.20	-3.3
1,857,929	+		DZA65_RS08780	0.22	+1.2
1,857,929	+		DZA65_RS08780	0.22	-0.7
1,857,929	+		DZA65_RS08780	0.22	+0.1
1,857,929	+		DZA65_RS08780	0.22	+0.8
1,857,929	+		DZA65_RS08780	0.22	+0.3
1,857,929	+		DZA65_RS08780	0.22	+0.5
1,857,929	+		DZA65_RS08780	0.22	-0.6
1,857,929	+		DZA65_RS08780	0.22	-1.5
1,857,929	+		DZA65_RS08780	0.22	-0.7
1,857,929	+		DZA65_RS08780	0.22	-2.3
1,857,930	-		DZA65_RS08780	0.22	+0.9
1,857,930	-		DZA65_RS08780	0.22	+0.3
1,857,930	-		DZA65_RS08780	0.22	+1.3
1,857,930	-		DZA65_RS08780	0.22	+0.8
1,857,930	-		DZA65_RS08780	0.22	+1.1
1,857,930	-		DZA65_RS08780	0.22	+1.3
1,857,930	-		DZA65_RS08780	0.22	+0.1
1,857,930	-		DZA65_RS08780	0.22	-0.3
1,857,930	-		DZA65_RS08780	0.22	+0.0
1,857,930	-		DZA65_RS08780	0.22	-1.3
1,857,930	-		DZA65_RS08780	0.22	+0.5
1,857,930	-		DZA65_RS08780	0.22	+0.5
1,857,930	-		DZA65_RS08780	0.22	+2.0
1,857,930	-		DZA65_RS08780	0.22	-1.4
1,857,930	-		DZA65_RS08780	0.22	+0.0
1,857,930	-		DZA65_RS08780	0.22	+0.0
1,857,931	+		DZA65_RS08780	0.22	-0.0
1,857,931	+		DZA65_RS08780	0.22	-0.3
1,857,931	+		DZA65_RS08780	0.22	-0.9
1,857,931	+		DZA65_RS08780	0.22	-0.1
1,857,931	+		DZA65_RS08780	0.22	-0.7
1,857,931	+		DZA65_RS08780	0.22	+1.2
1,857,931	+		DZA65_RS08780	0.22	+0.3
1,857,931	+		DZA65_RS08780	0.22	-0.3
1,857,932	-		DZA65_RS08780	0.22	-0.6
1,857,932	-		DZA65_RS08780	0.22	-0.1
1,857,932	-		DZA65_RS08780	0.22	-1.4
1,857,932	-		DZA65_RS08780	0.22	+1.3
1,857,932	-		DZA65_RS08780	0.22	+0.3
1,857,932	-		DZA65_RS08780	0.22	+0.3
1,857,932	-		DZA65_RS08780	0.22	+0.3
1,857,932	-		DZA65_RS08780	0.22	+0.6
1,857,932	-		DZA65_RS08780	0.22	+0.3
1,857,969	-		DZA65_RS08780	0.31	+0.9
1,858,028	-		DZA65_RS08780	0.46	-1.5
1,858,043	+		DZA65_RS08780	0.49	+0.4
1,858,044	-		DZA65_RS08780	0.50	+0.3
1,858,144	+		DZA65_RS08780	0.74	+0.3
1,858,144	+		DZA65_RS08780	0.74	+1.3
1,858,144	+		DZA65_RS08780	0.74	+1.3
1,858,145	-		DZA65_RS08780	0.74	-0.8
1,858,145	-		DZA65_RS08780	0.74	+1.4
1,858,150	+		DZA65_RS08780	0.75	+0.5
1,858,179	-		DZA65_RS08780	0.82	+0.7
1,858,245	-				-0.1
1,858,282	+				-1.3
1,858,307	+				-0.3
1,858,307	+				-0.3
1,858,307	+				+1.2
1,858,307	+				-0.4
1,858,311	+				-0.3
1,858,318	+				+0.5
1,858,318	+				-1.6
1,858,318	+				-0.8
1,858,319	-				-1.5
1,858,319	-				-0.2
1,858,319	-				+0.3
1,858,319	-				-1.6
1,858,319	-				+0.3
1,858,322	+				-0.7
1,858,322	+				-2.7
1,858,322	+				+0.3
1,858,322	+				-0.6
1,858,323	-				+0.6
1,858,323	-				-0.4
1,858,323	-				+0.3
1,858,323	-				-0.6
1,858,501	+		DZA65_RS08785	0.45	-2.1
1,858,501	+		DZA65_RS08785	0.45	+1.1
1,858,501	+		DZA65_RS08785	0.45	+0.1
1,858,502	-		DZA65_RS08785	0.45	+0.0
1,858,502	-		DZA65_RS08785	0.45	-0.5
1,858,502	-		DZA65_RS08785	0.45	+0.1
1,858,549	+		DZA65_RS08785	0.56	+0.3
1,858,549	+		DZA65_RS08785	0.56	-0.7
1,858,549	+		DZA65_RS08785	0.56	-0.5
1,858,550	-				-0.7
1,858,550	-		DZA65_RS08785	0.57	-0.5
1,858,550	-		DZA65_RS08785	0.57	+0.2
1,858,550	-		DZA65_RS08785	0.57	-1.3
1,858,550	-		DZA65_RS08785	0.57	+0.9
1,858,550	-		DZA65_RS08785	0.57	+0.3
1,858,550	-		DZA65_RS08785	0.57	+0.3
1,858,550	-		DZA65_RS08785	0.57	-1.5
1,858,550	-		DZA65_RS08785	0.57	-0.7
1,858,556	+		DZA65_RS08785	0.58	+0.3
1,858,556	+		DZA65_RS08785	0.58	+0.4
1,858,557	-		DZA65_RS08785	0.58	-0.1
1,858,643	+		DZA65_RS08785	0.79	-2.1
1,858,643	+		DZA65_RS08785	0.79	-0.7
1,858,721	+				-0.4
1,858,722	-				+0.3
1,858,722	-				+0.3
1,858,722	-				+0.3
1,858,728	+				-0.6
1,858,728	+				+0.4
1,858,728	+				-1.1
1,858,728	+				+0.1
1,858,728	+				+0.1
1,858,728	+				+1.0
1,858,729	-				-0.1
1,858,729	-				-1.7
1,858,729	-				+0.1
1,858,729	-				-2.2
1,858,753	+				+0.7
1,858,754	-				-0.4
1,858,756	+				+0.4
1,858,756	+				-1.1
1,858,756	+				+2.0
1,858,763	+				+0.3
1,858,763	+				-0.4
1,858,763	+				+0.7
1,858,763	+				-1.1
1,858,764	-				+0.3
1,858,764	-				-0.0
1,858,764	-				+0.0
1,858,780	+				+0.5
1,858,781	-				-0.2
1,858,810	+				+1.5
1,858,810	+				-0.7
1,858,986	+		DZA65_RS08790	0.20	+0.9
1,858,986	+		DZA65_RS08790	0.20	+0.5
1,858,987	-		DZA65_RS08790	0.20	-0.3
1,858,987	-		DZA65_RS08790	0.20	+1.5
1,858,987	-		DZA65_RS08790	0.20	-0.5
1,859,086	+				+1.3
1,859,172	+		DZA65_RS08790	0.41	-0.4
1,859,172	+		DZA65_RS08790	0.41	+0.3
1,859,172	+		DZA65_RS08790	0.41	-0.7
1,859,173	-		DZA65_RS08790	0.41	-0.8
1,859,173	-		DZA65_RS08790	0.41	-0.6
1,859,173	-		DZA65_RS08790	0.41	-0.6
1,859,173	-		DZA65_RS08790	0.41	+0.9
1,859,196	+		DZA65_RS08790	0.43	+0.6
1,859,236	+		DZA65_RS08790	0.48	+1.4
1,859,237	-		DZA65_RS08790	0.48	+3.9