Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08175

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,710,354	+		DZA65_RS08170	0.73	+0.3
1,710,355	-		DZA65_RS08170	0.73	+0.1
1,710,355	-		DZA65_RS08170	0.73	+0.7
1,710,362	+		DZA65_RS08170	0.73	-0.5
1,710,425	+		DZA65_RS08170	0.75	-0.5
1,710,471	+		DZA65_RS08170	0.76	-0.7
1,710,471	+		DZA65_RS08170	0.76	+1.0
1,710,687	+		DZA65_RS08170	0.84	-2.5
1,710,688	-		DZA65_RS08170	0.84	+0.3
1,710,688	-		DZA65_RS08170	0.84	-0.3
1,710,807	+		DZA65_RS08170	0.88	-0.9
1,710,822	+		DZA65_RS08170	0.88	-0.7
1,710,822	+		DZA65_RS08170	0.88	-1.1
1,710,823	-		DZA65_RS08170	0.88	+0.5
1,710,823	-		DZA65_RS08170	0.88	-0.9
1,710,823	-		DZA65_RS08170	0.88	-0.0
1,710,823	-		DZA65_RS08170	0.88	-1.0
1,710,823	-		DZA65_RS08170	0.88	+0.1
1,710,823	-		DZA65_RS08170	0.88	+0.3
1,710,823	-		DZA65_RS08170	0.88	+0.2
1,710,823	-		DZA65_RS08170	0.88	+0.1
1,710,975	+				+1.2
1,710,976	-				-3.2
1,711,152	+				+0.3
1,711,152	+				-1.1
1,711,152	+				+0.0
1,711,153	-				-0.2
1,711,185	+				-1.0
1,711,185	+				-2.5
1,711,186	-				+0.0
1,711,191	+				-0.5
1,711,192	-				-1.3
1,711,199	+				+0.7
1,711,199	+				+0.3
1,711,199	+				-0.3
1,711,200	-				+1.1
1,711,220	+				-0.1
1,711,220	+				+2.2
1,711,221	-				+0.7
1,711,223	+				-1.4
1,711,223	+				+0.2
1,711,223	+				-2.3
1,711,277	+				+1.0
1,711,277	+				+0.3
1,711,282	-				-1.7
1,711,298	+		DZA65_RS08175	0.11	+0.5
1,711,298	+		DZA65_RS08175	0.11	+0.3
1,711,299	-		DZA65_RS08175	0.11	+0.5
1,711,325	+		DZA65_RS08175	0.14	-0.1
1,711,396	-		DZA65_RS08175	0.22	-0.3
1,711,488	-		DZA65_RS08175	0.32	+0.1
1,711,488	-		DZA65_RS08175	0.32	-1.7
1,711,499	+		DZA65_RS08175	0.33	-0.1
1,711,499	+		DZA65_RS08175	0.33	-0.2
1,711,499	+		DZA65_RS08175	0.33	+0.5
1,711,499	+		DZA65_RS08175	0.33	-2.3
1,711,500	-		DZA65_RS08175	0.33	-0.6
1,711,500	-		DZA65_RS08175	0.33	-0.5
1,711,500	-		DZA65_RS08175	0.33	+0.1
1,711,500	-		DZA65_RS08175	0.33	-0.3
1,711,500	-		DZA65_RS08175	0.33	-0.6
1,711,554	-		DZA65_RS08175	0.39	-0.0
1,711,560	+		DZA65_RS08175	0.40	+0.7
1,711,561	-		DZA65_RS08175	0.40	+0.5
1,711,561	-		DZA65_RS08175	0.40	+1.3
1,711,612	-		DZA65_RS08175	0.45	+2.3
1,711,679	+		DZA65_RS08175	0.53	-0.8
1,711,679	+		DZA65_RS08175	0.53	-1.1
1,711,679	+		DZA65_RS08175	0.53	+1.0
1,711,679	+		DZA65_RS08175	0.53	-1.4
1,711,680	-		DZA65_RS08175	0.53	-0.2
1,711,680	-		DZA65_RS08175	0.53	-0.0
1,711,680	-		DZA65_RS08175	0.53	-1.0
1,711,680	-		DZA65_RS08175	0.53	-0.2
1,711,681	-		DZA65_RS08175	0.53	-1.3
1,711,840	-		DZA65_RS08175	0.70	+1.2
1,711,875	+		DZA65_RS08175	0.74	-0.1
1,711,875	+		DZA65_RS08175	0.74	-1.9
1,711,875	+		DZA65_RS08175	0.74	-2.0
1,711,875	+		DZA65_RS08175	0.74	-0.5
1,711,875	+		DZA65_RS08175	0.74	-0.0
1,711,875	+		DZA65_RS08175	0.74	-0.5
1,711,875	+		DZA65_RS08175	0.74	-0.4
1,711,875	+		DZA65_RS08175	0.74	-0.0
1,711,875	+		DZA65_RS08175	0.74	-0.4
1,711,875	+		DZA65_RS08175	0.74	+0.5
1,711,875	+		DZA65_RS08175	0.74	-0.7
1,711,875	+		DZA65_RS08175	0.74	-0.0
1,711,875	+		DZA65_RS08175	0.74	+0.1
1,711,875	+		DZA65_RS08175	0.74	-1.5
1,711,875	+		DZA65_RS08175	0.74	+1.7
1,711,875	+		DZA65_RS08175	0.74	+1.7
1,711,875	+		DZA65_RS08175	0.74	-1.5
1,711,875	+		DZA65_RS08175	0.74	-2.9
1,711,875	+		DZA65_RS08175	0.74	+1.0
1,711,875	+		DZA65_RS08175	0.74	+1.2
1,711,876	-		DZA65_RS08175	0.74	+0.0
1,711,876	-		DZA65_RS08175	0.74	-0.3
1,711,876	-		DZA65_RS08175	0.74	+2.1
1,711,876	-		DZA65_RS08175	0.74	+0.7
1,711,876	-		DZA65_RS08175	0.74	+0.3
1,711,876	-		DZA65_RS08175	0.74	-0.9
1,711,876	-		DZA65_RS08175	0.74	+1.6
1,711,876	-		DZA65_RS08175	0.74	-2.9
1,711,876	-		DZA65_RS08175	0.74	-0.8
1,711,876	-		DZA65_RS08175	0.74	+0.3
1,711,876	-		DZA65_RS08175	0.74	-0.9
1,711,876	-		DZA65_RS08175	0.74	+0.6
1,711,876	-		DZA65_RS08175	0.74	-0.5
1,711,876	-		DZA65_RS08175	0.74	-0.5
1,711,876	-		DZA65_RS08175	0.74	+0.1
1,711,876	-		DZA65_RS08175	0.74	-1.0
1,711,876	-		DZA65_RS08175	0.74	-0.6
1,712,025	+				+0.3
1,712,025	+				-0.6
1,712,025	+				-1.1
1,712,026	-				-0.7
1,712,026	-				-0.1
1,712,026	-				+0.7
1,712,026	-				+0.4
1,712,026	-				+0.8
1,712,026	-				-0.1
1,712,026	-				-0.4
1,712,096	+				-0.1
1,712,096	+				+0.9
1,712,096	+				-1.1
1,712,096	+				+0.1
1,712,096	+				-1.7
1,712,096	+				-0.6
1,712,097	-				-0.5
1,712,097	-				-0.9
1,712,097	-				+0.5
1,712,097	-				+0.1
1,712,097	-				-0.6
1,712,097	-				+0.3
1,712,097	-				-1.3
1,712,106	+				-1.6
1,712,107	-				-0.4
1,712,168	+		DZA65_RS08180	0.10	+0.9
1,712,169	-		DZA65_RS08180	0.11	-0.0
1,712,169	-		DZA65_RS08180	0.11	+0.5
1,712,169	-		DZA65_RS08180	0.11	+1.1
1,712,169	-		DZA65_RS08180	0.11	+0.8
1,712,283	+		DZA65_RS08180	0.28	-0.2
1,712,334	+		DZA65_RS08180	0.36	-1.7
1,712,334	+		DZA65_RS08180	0.36	-0.6
1,712,334	+		DZA65_RS08180	0.36	+0.1
1,712,334	+		DZA65_RS08180	0.36	+0.1
1,712,335	-		DZA65_RS08180	0.36	-2.3
1,712,335	-		DZA65_RS08180	0.36	+0.1
1,712,335	-		DZA65_RS08180	0.36	+2.7
1,712,335	-		DZA65_RS08180	0.36	-0.5
1,712,373	+		DZA65_RS08180	0.42	+1.0
1,712,373	+		DZA65_RS08180	0.42	+0.6
1,712,374	-		DZA65_RS08180	0.43	+1.3
1,712,374	-		DZA65_RS08180	0.43	+0.6
1,712,425	+		DZA65_RS08180	0.50	+0.8
1,712,425	+		DZA65_RS08180	0.50	-2.0
1,712,425	+		DZA65_RS08180	0.50	+0.7
1,712,425	+		DZA65_RS08180	0.50	-0.1
1,712,425	+		DZA65_RS08180	0.50	+2.4
1,712,426	-		DZA65_RS08180	0.51	+0.7
1,712,426	-		DZA65_RS08180	0.51	-0.4
1,712,426	-		DZA65_RS08180	0.51	-1.3
1,712,426	-		DZA65_RS08180	0.51	-0.1
1,712,426	-		DZA65_RS08180	0.51	+0.4
1,712,426	-		DZA65_RS08180	0.51	-1.5
1,712,426	-		DZA65_RS08180	0.51	+0.6
1,712,426	-		DZA65_RS08180	0.51	-1.3
1,712,426	-		DZA65_RS08180	0.51	-0.5
1,712,512	+		DZA65_RS08180	0.64	+0.2
1,712,534	+		DZA65_RS08180	0.67	-0.5
1,712,611	+		DZA65_RS08180	0.79	-1.6
1,712,611	+		DZA65_RS08180	0.79	+0.5
1,712,611	+		DZA65_RS08180	0.79	-0.4
1,712,611	+		DZA65_RS08180	0.79	+0.5
1,712,611	+		DZA65_RS08180	0.79	+0.0
1,712,611	+		DZA65_RS08180	0.79	+0.3
1,712,611	+		DZA65_RS08180	0.79	+1.0
1,712,611	+		DZA65_RS08180	0.79	+0.3
1,712,611	+		DZA65_RS08180	0.79	-0.8
1,712,611	+		DZA65_RS08180	0.79	-1.3
1,712,611	+		DZA65_RS08180	0.79	+2.1
1,712,611	+		DZA65_RS08180	0.79	+1.3
1,712,611	+		DZA65_RS08180	0.79	-2.3
1,712,611	+		DZA65_RS08180	0.79	-0.4
1,712,611	+		DZA65_RS08180	0.79	+0.4
1,712,612	-		DZA65_RS08180	0.80	+0.3
1,712,612	-		DZA65_RS08180	0.80	+0.5
1,712,612	-		DZA65_RS08180	0.80	-2.5
1,712,612	-		DZA65_RS08180	0.80	-2.1
1,712,612	-		DZA65_RS08180	0.80	-0.6
1,712,612	-		DZA65_RS08180	0.80	+0.2
1,712,612	-		DZA65_RS08180	0.80	+3.0
1,712,612	-		DZA65_RS08180	0.80	+0.3
1,712,612	-		DZA65_RS08180	0.80	+1.3
1,712,612	-		DZA65_RS08180	0.80	-0.5
1,712,612	-		DZA65_RS08180	0.80	-2.3
1,712,638	-		DZA65_RS08180	0.84	+0.1
1,712,638	-		DZA65_RS08180	0.84	-1.2
1,712,638	-		DZA65_RS08180	0.84	+0.3
1,712,727	+				-2.3
1,712,727	+				+1.6
1,712,733	+				-0.1
1,712,734	-				+0.1
1,712,740	+				-0.2
1,712,740	+				+2.1
1,712,740	+				+1.0
1,712,741	-				-0.0
1,712,741	-				-0.2
1,712,741	-				+1.1
1,712,749	+				+0.6
1,712,926	-				-0.2
1,712,986	+				+0.3
1,712,986	+				+1.0
1,712,986	+				+0.1
1,712,986	+				-0.2
1,712,987	-				-0.6
1,712,987	-				-0.7
1,712,992	+				-1.2
1,712,992	+				+0.7
1,712,992	+				+1.0
1,712,993	-				+0.8
1,712,993	-				+0.5
1,712,993	-				+0.8
1,712,993	-				-1.0
1,712,993	-				-2.5
1,712,993	-				-0.5
1,712,993	-				+1.0
1,712,993	-				+0.3
1,713,012	+				-1.0
1,713,013	-				-1.3
1,713,046	+				-1.3
1,713,046	+				-2.0
1,713,046	+				-1.3
1,713,046	+				-1.7
1,713,046	+				+0.5
1,713,046	+				+0.8
1,713,046	+				-1.2
1,713,046	+				+0.3
1,713,047	-				-0.3
1,713,047	-				-0.3
1,713,047	-				-0.5
1,713,047	-				-0.3
1,713,047	-				-0.5
1,713,047	-				-2.3
1,713,047	-				-0.7
1,713,047	-				+1.3