Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07615

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,585,644	+		DZA65_RS07605	0.89	-0.1
1,585,645	-		DZA65_RS07605	0.89	+1.1
1,585,674	+				-0.7
1,585,722	+				+0.6
1,585,722	+				+0.7
1,585,723	-				+0.8
1,585,723	-				+0.5
1,585,771	-				+0.8
1,585,839	+		DZA65_RS07610	0.15	-0.2
1,585,845	+		DZA65_RS07610	0.15	+1.5
1,585,845	+		DZA65_RS07610	0.15	+0.6
1,585,846	-		DZA65_RS07610	0.16	-1.0
1,585,846	-		DZA65_RS07610	0.16	+1.5
1,585,846	-		DZA65_RS07610	0.16	+0.7
1,585,867	+		DZA65_RS07610	0.19	+0.7
1,585,904	+		DZA65_RS07610	0.24	-0.4
1,585,905	-		DZA65_RS07610	0.24	-0.9
1,585,912	+		DZA65_RS07610	0.25	+1.3
1,585,912	+		DZA65_RS07610	0.25	-0.9
1,585,913	-		DZA65_RS07610	0.25	+0.3
1,585,913	-		DZA65_RS07610	0.25	-1.3
1,585,919	+		DZA65_RS07610	0.26	-0.3
1,585,919	+		DZA65_RS07610	0.26	+0.7
1,585,932	+		DZA65_RS07610	0.28	-0.8
1,585,932	+		DZA65_RS07610	0.28	-0.5
1,585,933	-		DZA65_RS07610	0.28	+0.6
1,585,989	+		DZA65_RS07610	0.37	+0.3
1,585,990	-		DZA65_RS07610	0.37	-0.0
1,585,990	-		DZA65_RS07610	0.37	-2.0
1,585,999	+		DZA65_RS07610	0.38	-0.6
1,586,046	+		DZA65_RS07610	0.45	-1.1
1,586,046	+		DZA65_RS07610	0.45	-2.9
1,586,047	-		DZA65_RS07610	0.45	-0.6
1,586,091	+		DZA65_RS07610	0.51	-2.7
1,586,112	+		DZA65_RS07610	0.55	-1.3
1,586,112	+		DZA65_RS07610	0.55	-1.0
1,586,112	+		DZA65_RS07610	0.55	+1.3
1,586,112	+		DZA65_RS07610	0.55	-0.7
1,586,112	+		DZA65_RS07610	0.55	-0.4
1,586,113	-		DZA65_RS07610	0.55	+2.0
1,586,113	-		DZA65_RS07610	0.55	+0.2
1,586,113	-		DZA65_RS07610	0.55	-0.4
1,586,113	-		DZA65_RS07610	0.55	+1.6
1,586,113	-				-1.7
1,586,116	+		DZA65_RS07610	0.55	+0.2
1,586,116	+		DZA65_RS07610	0.55	-1.2
1,586,117	-		DZA65_RS07610	0.55	+0.0
1,586,117	-		DZA65_RS07610	0.55	-0.0
1,586,117	-		DZA65_RS07610	0.55	-1.4
1,586,118	+		DZA65_RS07610	0.55	-2.3
1,586,119	-		DZA65_RS07610	0.56	+0.3
1,586,119	-		DZA65_RS07610	0.56	+1.3
1,586,139	+		DZA65_RS07610	0.58	-0.4
1,586,139	+		DZA65_RS07610	0.58	+2.2
1,586,140	-		DZA65_RS07610	0.59	+0.3
1,586,207	-		DZA65_RS07610	0.68	-0.2
1,586,207	-		DZA65_RS07610	0.68	-0.8
1,586,207	-		DZA65_RS07610	0.68	-0.0
1,586,207	-		DZA65_RS07610	0.68	-1.1
1,586,207	-		DZA65_RS07610	0.68	-2.3
1,586,207	-		DZA65_RS07610	0.68	-0.2
1,586,207	-		DZA65_RS07610	0.68	-1.7
1,586,207	-		DZA65_RS07610	0.68	+0.7
1,586,207	-		DZA65_RS07610	0.68	+1.1
1,586,207	-		DZA65_RS07610	0.68	-0.2
1,586,209	-		DZA65_RS07610	0.69	-1.5
1,586,209	-		DZA65_RS07610	0.69	-0.5
1,586,209	-		DZA65_RS07610	0.69	-1.3
1,586,209	-		DZA65_RS07610	0.69	-1.8
1,586,209	-		DZA65_RS07610	0.69	+0.5
1,586,209	-		DZA65_RS07610	0.69	-0.4
1,586,209	-		DZA65_RS07610	0.69	+0.6
1,586,209	-		DZA65_RS07610	0.69	-0.5
1,586,209	-		DZA65_RS07610	0.69	+1.1
1,586,209	-		DZA65_RS07610	0.69	-1.1
1,586,209	-		DZA65_RS07610	0.69	-0.3
1,586,209	-		DZA65_RS07610	0.69	+0.6
1,586,209	-		DZA65_RS07610	0.69	-0.9
1,586,209	-		DZA65_RS07610	0.69	-1.7
1,586,209	-		DZA65_RS07610	0.69	+0.9
1,586,209	-		DZA65_RS07610	0.69	-0.5
1,586,209	-		DZA65_RS07610	0.69	-0.6
1,586,243	+		DZA65_RS07610	0.74	-0.9
1,586,243	+		DZA65_RS07610	0.74	+0.6
1,586,244	-		DZA65_RS07610	0.74	+1.5
1,586,244	-		DZA65_RS07610	0.74	-1.8
1,586,278	+		DZA65_RS07610	0.79	-1.4
1,586,279	-		DZA65_RS07610	0.79	+0.6
1,586,442	-				-2.1
1,586,577	-				-1.3
1,586,645	-				-0.7
1,586,675	+				-1.3
1,586,675	+				+0.8
1,586,676	-				+1.0
1,586,844	+		DZA65_RS07615	0.20	+0.1
1,586,895	+		DZA65_RS07615	0.24	-0.7
1,586,895	+		DZA65_RS07615	0.24	+0.7
1,586,895	+		DZA65_RS07615	0.24	+0.2
1,586,896	-		DZA65_RS07615	0.25	+1.5
1,586,896	-		DZA65_RS07615	0.25	-0.3
1,586,928	-				-0.7
1,586,975	+		DZA65_RS07615	0.32	+1.1
1,586,976	-		DZA65_RS07615	0.32	-0.1
1,586,982	-		DZA65_RS07615	0.33	-0.7
1,587,002	+		DZA65_RS07615	0.35	+0.2
1,587,011	+		DZA65_RS07615	0.36	-0.1
1,587,020	+		DZA65_RS07615	0.37	-0.9
1,587,020	+		DZA65_RS07615	0.37	+0.6
1,587,021	-		DZA65_RS07615	0.37	-0.7
1,587,032	-		DZA65_RS07615	0.38	+0.6
1,587,032	-		DZA65_RS07615	0.38	+1.0
1,587,035	+		DZA65_RS07615	0.38	-0.9
1,587,036	-		DZA65_RS07615	0.38	+0.3
1,587,036	-		DZA65_RS07615	0.38	+0.3
1,587,036	-		DZA65_RS07615	0.38	-1.9
1,587,054	+		DZA65_RS07615	0.40	+0.4
1,587,074	+		DZA65_RS07615	0.42	-1.5
1,587,075	-		DZA65_RS07615	0.42	+1.6
1,587,133	+		DZA65_RS07615	0.48	+2.4
1,587,134	-		DZA65_RS07615	0.48	+1.1
1,587,177	+		DZA65_RS07615	0.52	+0.3
1,587,177	+		DZA65_RS07615	0.52	+0.8
1,587,177	+		DZA65_RS07615	0.52	+0.2
1,587,178	-		DZA65_RS07615	0.52	-1.0
1,587,178	-		DZA65_RS07615	0.52	-0.5
1,587,178	-		DZA65_RS07615	0.52	+2.1
1,587,233	+		DZA65_RS07615	0.57	-0.9
1,587,234	-		DZA65_RS07615	0.57	+1.7
1,587,279	+		DZA65_RS07615	0.62	+0.6
1,587,279	+		DZA65_RS07615	0.62	-1.0
1,587,279	+				-1.0
1,587,280	-		DZA65_RS07615	0.62	+1.4
1,587,280	-		DZA65_RS07615	0.62	-0.1
1,587,280	-		DZA65_RS07615	0.62	-1.7
1,587,365	+		DZA65_RS07615	0.70	-1.0
1,587,456	+		DZA65_RS07615	0.79	+1.6
1,587,459	+		DZA65_RS07615	0.79	+1.2
1,587,471	+		DZA65_RS07615	0.80	-0.2
1,587,471	+		DZA65_RS07615	0.80	+0.3
1,587,472	-		DZA65_RS07615	0.81	+0.1
1,587,472	-		DZA65_RS07615	0.81	-0.3
1,587,473	+		DZA65_RS07615	0.81	-0.1
1,587,546	+		DZA65_RS07615	0.88	+0.7
1,587,546	+		DZA65_RS07615	0.88	-2.7
1,587,546	+		DZA65_RS07615	0.88	+0.3
1,587,546	+		DZA65_RS07615	0.88	-0.3
1,587,547	-		DZA65_RS07615	0.88	+0.1
1,587,547	-		DZA65_RS07615	0.88	-0.2
1,587,572	+				-3.4
1,587,572	+				+1.3
1,587,572	+				+1.5
1,587,572	+				+0.3
1,587,572	+				+0.2
1,587,573	-				+0.9
1,587,573	-				+0.9
1,587,576	+				-2.0
1,587,576	+				+0.9
1,587,576	+				-0.3
1,587,576	+				-0.1
1,587,577	-				+0.3
1,587,577	-				-2.7
1,587,621	+				-0.9
1,587,622	-				-0.2
1,587,659	+				+0.6
1,587,659	+				+1.2
1,587,660	-				-2.7
1,587,660	-				+1.7
1,587,660	-				-0.2
1,587,671	+				+1.1
1,587,671	+				-0.1
1,587,671	+				-0.1
1,587,671	+				+0.3
1,587,684	+				-1.7
1,587,684	+				-0.3
1,587,822	+		DZA65_RS07620	0.62	-0.7
1,587,822	+		DZA65_RS07620	0.62	+0.3
1,587,822	+		DZA65_RS07620	0.62	+0.9
1,587,822	+		DZA65_RS07620	0.62	-0.4
1,587,823	-		DZA65_RS07620	0.62	-0.6
1,587,877	+		DZA65_RS07620	0.86	+2.1
1,587,877	+		DZA65_RS07620	0.86	+0.3
1,587,926	+				-0.9
1,588,149	+		DZA65_RS07625	0.32	-0.7
1,588,185	-		DZA65_RS07625	0.37	-0.5
1,588,212	+		DZA65_RS07625	0.41	-1.1
1,588,212	+		DZA65_RS07625	0.41	-0.9
1,588,212	+		DZA65_RS07625	0.41	+0.3
1,588,263	-		DZA65_RS07625	0.48	-0.9
1,588,268	+		DZA65_RS07625	0.49	+0.3
1,588,268	+		DZA65_RS07625	0.49	-1.3
1,588,269	-		DZA65_RS07625	0.49	+0.7
1,588,269	-		DZA65_RS07625	0.49	-0.8
1,588,269	-		DZA65_RS07625	0.49	+0.3
1,588,269	-		DZA65_RS07625	0.49	+0.8
1,588,269	-		DZA65_RS07625	0.49	-0.1
1,588,282	+		DZA65_RS07625	0.51	-0.9
1,588,289	+		DZA65_RS07625	0.52	-0.9
1,588,290	-		DZA65_RS07625	0.52	+1.1
1,588,291	+		DZA65_RS07625	0.52	-2.1
1,588,291	+		DZA65_RS07625	0.52	+1.0
1,588,292	-		DZA65_RS07625	0.52	-1.0
1,588,293	+		DZA65_RS07625	0.52	-0.3
1,588,293	+		DZA65_RS07625	0.52	-0.3
1,588,293	+		DZA65_RS07625	0.52	+3.1
1,588,294	-		DZA65_RS07625	0.52	+0.2
1,588,294	-		DZA65_RS07625	0.52	+0.5
1,588,316	-		DZA65_RS07625	0.56	+1.0
1,588,316	-		DZA65_RS07625	0.56	+0.6
1,588,355	+		DZA65_RS07625	0.61	-0.1
1,588,446	+		DZA65_RS07625	0.74	+0.9
1,588,446	+		DZA65_RS07625	0.74	-0.1
1,588,446	+		DZA65_RS07625	0.74	-0.6
1,588,457	+		DZA65_RS07625	0.75	+1.9
1,588,457	+		DZA65_RS07625	0.75	-2.0
1,588,458	-		DZA65_RS07625	0.75	+0.8
1,588,458	-		DZA65_RS07625	0.75	+0.3
1,588,458	-		DZA65_RS07625	0.75	-0.3
1,588,459	+		DZA65_RS07625	0.75	-0.7
1,588,460	-		DZA65_RS07625	0.76	+0.9
1,588,460	-		DZA65_RS07625	0.76	+1.3
1,588,460	-		DZA65_RS07625	0.76	-1.3
1,588,460	-		DZA65_RS07625	0.76	-0.2
1,588,460	-		DZA65_RS07625	0.76	-2.9
1,588,460	-		DZA65_RS07625	0.76	+0.2
1,588,478	+		DZA65_RS07625	0.78	-0.7
1,588,478	+		DZA65_RS07625	0.78	+0.1
1,588,478	+		DZA65_RS07625	0.78	-0.1
1,588,478	+		DZA65_RS07625	0.78	-1.9
1,588,478	+		DZA65_RS07625	0.78	+0.9
1,588,479	-		DZA65_RS07625	0.78	-1.3
1,588,479	-		DZA65_RS07625	0.78	+0.1
1,588,479	-		DZA65_RS07625	0.78	-0.7
1,588,479	-		DZA65_RS07625	0.78	-0.5
1,588,479	-		DZA65_RS07625	0.78	+0.5
1,588,479	-		DZA65_RS07625	0.78	-0.4
1,588,481	-		DZA65_RS07625	0.79	-0.7
1,588,481	-		DZA65_RS07625	0.79	+0.3
1,588,481	-		DZA65_RS07625	0.79	-0.1
1,588,578	+				-0.3
1,588,579	-				-0.4
1,588,579	-				+0.9
1,588,579	-				+1.2
1,588,599	+				-0.9