Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05600

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,151,241	+				+0.5
1,151,241	+				+0.1
1,151,241	+				+0.5
1,151,278	+				-0.3
1,151,279	-				+0.5
1,151,279	-				+0.9
1,151,347	+				+0.5
1,151,347	+				+0.6
1,151,347	+				-0.9
1,151,348	-				-0.4
1,151,348	-				+1.0
1,151,348	-				-1.1
1,151,392	+		DZA65_RS05595	0.12	+0.3
1,151,392	+		DZA65_RS05595	0.12	-1.3
1,151,392	+		DZA65_RS05595	0.12	-0.8
1,151,392	+		DZA65_RS05595	0.12	-1.5
1,151,423	+		DZA65_RS05595	0.16	+1.0
1,151,423	+		DZA65_RS05595	0.16	+0.9
1,151,424	-		DZA65_RS05595	0.16	+1.2
1,151,424	-		DZA65_RS05595	0.16	-0.6
1,151,429	+		DZA65_RS05595	0.17	-0.5
1,151,429	+		DZA65_RS05595	0.17	+0.2
1,151,429	+		DZA65_RS05595	0.17	-0.9
1,151,429	+		DZA65_RS05595	0.17	-0.2
1,151,430	-		DZA65_RS05595	0.17	-0.8
1,151,430	-		DZA65_RS05595	0.17	+1.1
1,151,495	+		DZA65_RS05595	0.26	-1.1
1,151,496	-		DZA65_RS05595	0.26	-2.1
1,151,505	-		DZA65_RS05595	0.27	+0.9
1,151,505	-		DZA65_RS05595	0.27	-0.1
1,151,575	+		DZA65_RS05595	0.37	+0.0
1,151,575	+		DZA65_RS05595	0.37	+0.5
1,151,575	+		DZA65_RS05595	0.37	-0.6
1,151,575	+		DZA65_RS05595	0.37	-0.2
1,151,575	+		DZA65_RS05595	0.37	-0.1
1,151,575	+		DZA65_RS05595	0.37	+1.4
1,151,575	+		DZA65_RS05595	0.37	-0.3
1,151,576	-		DZA65_RS05595	0.37	-1.5
1,151,576	-		DZA65_RS05595	0.37	-1.5
1,151,576	-		DZA65_RS05595	0.37	+0.3
1,151,576	-		DZA65_RS05595	0.37	-0.5
1,151,576	-		DZA65_RS05595	0.37	+1.8
1,151,580	+		DZA65_RS05595	0.37	-1.1
1,151,580	+		DZA65_RS05595	0.37	+0.4
1,151,580	+		DZA65_RS05595	0.37	-0.7
1,151,580	+		DZA65_RS05595	0.37	+0.5
1,151,580	+		DZA65_RS05595	0.37	+0.5
1,151,580	+		DZA65_RS05595	0.37	-0.7
1,151,580	+		DZA65_RS05595	0.37	+0.5
1,151,581	-		DZA65_RS05595	0.38	+0.1
1,151,581	-		DZA65_RS05595	0.38	-0.2
1,151,581	-		DZA65_RS05595	0.38	-1.3
1,151,635	+		DZA65_RS05595	0.45	+1.1
1,151,636	-		DZA65_RS05595	0.45	+1.4
1,151,636	-		DZA65_RS05595	0.45	-1.6
1,151,701	+		DZA65_RS05595	0.54	-2.0
1,151,702	-		DZA65_RS05595	0.54	+0.7
1,151,702	-		DZA65_RS05595	0.54	+0.2
1,151,713	+		DZA65_RS05595	0.55	+1.1
1,151,722	+		DZA65_RS05595	0.57	+0.4
1,151,723	-		DZA65_RS05595	0.57	-0.1
1,151,724	+		DZA65_RS05595	0.57	-0.5
1,151,724	+		DZA65_RS05595	0.57	+0.7
1,151,724	+		DZA65_RS05595	0.57	-2.3
1,151,724	+				+1.5
1,151,724	+		DZA65_RS05595	0.57	-1.8
1,151,724	+		DZA65_RS05595	0.57	+0.7
1,151,725	-		DZA65_RS05595	0.57	-0.6
1,151,725	-		DZA65_RS05595	0.57	-0.5
1,151,725	-		DZA65_RS05595	0.57	+0.5
1,151,725	-		DZA65_RS05595	0.57	-1.5
1,151,725	-		DZA65_RS05595	0.57	-0.0
1,151,725	-		DZA65_RS05595	0.57	-0.7
1,151,786	-		DZA65_RS05595	0.65	-0.2
1,151,934	+		DZA65_RS05595	0.85	-0.7
1,152,025	+				-1.2
1,152,026	-				-0.5
1,152,031	+				+0.1
1,152,032	-				-3.1
1,152,032	-				-0.1
1,152,032	-				-2.7
1,152,080	+				-0.6
1,152,082	+				-2.1
1,152,082	+				+1.1
1,152,082	+				-0.4
1,152,083	-				-1.3
1,152,083	-				+0.0
1,152,083	-				+0.8
1,152,097	+				+0.9
1,152,098	-				+1.3
1,152,188	+				+1.3
1,152,189	-				-0.5
1,152,189	-				+0.4
1,152,189	-				-1.1
1,152,189	-				+0.2
1,152,260	+		DZA65_RS05600	0.21	+0.5
1,152,261	-		DZA65_RS05600	0.21	-1.1
1,152,307	-		DZA65_RS05600	0.28	-0.4
1,152,307	-		DZA65_RS05600	0.28	-0.5
1,152,307	-		DZA65_RS05600	0.28	-0.3
1,152,307	-		DZA65_RS05600	0.28	-1.0
1,152,336	+		DZA65_RS05600	0.33	-1.3
1,152,337	-		DZA65_RS05600	0.33	-1.1
1,152,354	+		DZA65_RS05600	0.36	+1.5
1,152,354	+		DZA65_RS05600	0.36	+0.1
1,152,358	-		DZA65_RS05600	0.36	-0.9
1,152,369	+		DZA65_RS05600	0.38	+0.5
1,152,370	-		DZA65_RS05600	0.38	-0.1
1,152,370	-		DZA65_RS05600	0.38	-0.4
1,152,370	-		DZA65_RS05600	0.38	-0.7
1,152,432	+		DZA65_RS05600	0.48	-0.0
1,152,432	+		DZA65_RS05600	0.48	+0.0
1,152,432	+		DZA65_RS05600	0.48	-1.7
1,152,432	+		DZA65_RS05600	0.48	+0.1
1,152,433	-		DZA65_RS05600	0.48	-0.7
1,152,433	-		DZA65_RS05600	0.48	+0.5
1,152,437	+		DZA65_RS05600	0.49	-0.8
1,152,437	+		DZA65_RS05600	0.49	+0.8
1,152,438	-		DZA65_RS05600	0.49	-0.5
1,152,438	-		DZA65_RS05600	0.49	-0.3
1,152,438	-		DZA65_RS05600	0.49	-0.2
1,152,438	-		DZA65_RS05600	0.49	+0.5
1,152,494	+		DZA65_RS05600	0.58	-2.5
1,152,494	+		DZA65_RS05600	0.58	+0.2
1,152,494	+		DZA65_RS05600	0.58	-0.2
1,152,494	+		DZA65_RS05600	0.58	-0.7
1,152,494	+		DZA65_RS05600	0.58	-2.1
1,152,495	-		DZA65_RS05600	0.58	+0.2
1,152,495	-		DZA65_RS05600	0.58	-1.8
1,152,495	-		DZA65_RS05600	0.58	+0.7
1,152,495	-		DZA65_RS05600	0.58	-1.1
1,152,495	-		DZA65_RS05600	0.58	+1.0
1,152,495	-		DZA65_RS05600	0.58	-2.1
1,152,495	-		DZA65_RS05600	0.58	-0.2
1,152,495	-		DZA65_RS05600	0.58	+2.5
1,152,495	-		DZA65_RS05600	0.58	+0.7
1,152,547	+		DZA65_RS05600	0.66	+0.5
1,152,547	+		DZA65_RS05600	0.66	-0.7
1,152,548	-		DZA65_RS05600	0.66	+0.5
1,152,551	-		DZA65_RS05600	0.67	-0.9
1,152,551	-		DZA65_RS05600	0.67	-0.2
1,152,638	+		DZA65_RS05600	0.80	-0.7
1,152,638	+		DZA65_RS05600	0.80	+0.8
1,152,642	-		DZA65_RS05600	0.81	+0.1
1,152,657	+		DZA65_RS05600	0.83	-0.3
1,152,657	+		DZA65_RS05600	0.83	-0.7
1,152,658	-		DZA65_RS05600	0.83	-1.2
1,152,658	-		DZA65_RS05600	0.83	-0.9
1,152,670	+		DZA65_RS05600	0.85	-0.3
1,152,738	+				-2.3
1,152,739	-				-0.1
1,152,740	+				-0.2
1,152,740	+				-0.9
1,152,740	+				-1.1
1,152,740	+				+0.5
1,152,740	+				+0.2
1,152,741	-				-0.7
1,152,741	-				-0.9
1,152,741	-				+1.2
1,152,741	-				+1.2
1,152,741	-				+1.7
1,152,741	-				-1.7
1,153,184	-		DZA65_RS05605	0.48	+0.4
1,153,184	-		DZA65_RS05605	0.48	-1.3
1,153,289	+		DZA65_RS05605	0.61	-1.0
1,153,290	-		DZA65_RS05605	0.61	+1.2
1,153,333	+		DZA65_RS05605	0.66	+0.1
1,153,333	+		DZA65_RS05605	0.66	+0.5
1,153,334	-		DZA65_RS05605	0.66	+0.0
1,153,334	-		DZA65_RS05605	0.66	-0.7
1,153,334	-		DZA65_RS05605	0.66	+0.6
1,153,334	-		DZA65_RS05605	0.66	-0.7
1,153,337	+		DZA65_RS05605	0.66	+0.7
1,153,337	+		DZA65_RS05605	0.66	+0.4
1,153,337	+		DZA65_RS05605	0.66	-0.9
1,153,337	+		DZA65_RS05605	0.66	+0.4
1,153,338	-		DZA65_RS05605	0.67	+0.0
1,153,338	-		DZA65_RS05605	0.67	+0.0
1,153,338	-		DZA65_RS05605	0.67	+2.3
1,153,338	-		DZA65_RS05605	0.67	+0.3
1,153,366	-		DZA65_RS05605	0.70	-0.6
1,153,414	-		DZA65_RS05605	0.76	+0.1
1,153,414	-		DZA65_RS05605	0.76	-2.3
1,153,497	+		DZA65_RS05605	0.85	+0.7
1,153,498	-		DZA65_RS05605	0.85	-0.7
1,153,509	-		DZA65_RS05605	0.87	-0.8
1,153,509	-		DZA65_RS05605	0.87	+0.9
1,153,524	+		DZA65_RS05605	0.89	+0.4
1,153,524	+		DZA65_RS05605	0.89	+0.8
1,153,557	+				-0.3
1,153,557	+				+0.5
1,153,557	+				-1.5
1,153,558	-				+0.1
1,153,692	+				-0.2
1,153,693	-				+1.2
1,153,693	-				-0.5
1,153,703	+				-2.2
1,153,703	+				+0.3
1,153,703	+				+1.5
1,153,703	+				-0.1
1,153,703	+				-0.1
1,153,704	-				+0.9
1,153,704	-				+0.1
1,153,704	-				-0.2
1,153,704	-				+0.9
1,153,704	-				-1.4
1,153,707	+				+0.5
1,153,707	+				+0.5
1,153,707	+				+0.7
1,153,707	+				+0.5
1,153,708	-				-2.2
1,153,708	-				+0.0
1,153,708	-				+0.3
1,153,708	-				+0.8
1,153,725	+				+0.4
1,153,725	+				-0.7
1,153,726	-				+2.4
1,153,726	-				-0.2