Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05420

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,114,256	-		DZA65_RS05415	0.60	+0.1
1,114,306	-		DZA65_RS05415	0.69	-1.1
1,114,318	+		DZA65_RS05415	0.71	+0.8
1,114,318	+		DZA65_RS05415	0.71	-1.3
1,114,318	+		DZA65_RS05415	0.71	+1.0
1,114,318	+		DZA65_RS05415	0.71	+0.7
1,114,318	+		DZA65_RS05415	0.71	-1.7
1,114,318	+		DZA65_RS05415	0.71	-1.5
1,114,318	+		DZA65_RS05415	0.71	-2.1
1,114,318	+		DZA65_RS05415	0.71	-2.3
1,114,319	-		DZA65_RS05415	0.71	-1.5
1,114,319	-		DZA65_RS05415	0.71	-0.6
1,114,319	-		DZA65_RS05415	0.71	-1.5
1,114,319	-		DZA65_RS05415	0.71	-0.1
1,114,319	-		DZA65_RS05415	0.71	+1.2
1,114,319	-		DZA65_RS05415	0.71	-0.2
1,114,319	-		DZA65_RS05415	0.71	+0.5
1,114,319	-		DZA65_RS05415	0.71	-1.2
1,114,319	-		DZA65_RS05415	0.71	+0.0
1,114,319	-		DZA65_RS05415	0.71	+1.1
1,114,319	-		DZA65_RS05415	0.71	-0.1
1,114,319	-		DZA65_RS05415	0.71	-2.0
1,114,319	-		DZA65_RS05415	0.71	+2.0
1,114,319	-		DZA65_RS05415	0.71	-0.8
1,114,323	+		DZA65_RS05415	0.72	-0.4
1,114,323	+		DZA65_RS05415	0.72	+0.0
1,114,324	-		DZA65_RS05415	0.72	+1.4
1,114,454	-				-1.4
1,114,454	-				+0.9
1,114,475	+				+0.5
1,114,489	+				+0.3
1,114,489	+				+0.1
1,114,489	+				+0.9
1,114,551	+				+1.3
1,114,568	+				+0.8
1,114,568	+				+0.3
1,114,569	-				-0.2
1,114,569	-				-0.3
1,114,598	+				+0.8
1,114,631	+				-0.8
1,114,635	+				+0.5
1,114,643	+				+1.3
1,114,673	+				+1.1
1,114,682	-				-0.8
1,114,719	+				+0.8
1,114,719	+				+1.8
1,114,720	-				+2.1
1,114,720	-				-0.1
1,114,720	-				+0.5
1,114,722	+				+1.0
1,114,722	+				+1.0
1,114,723	-				-2.1
1,114,723	-				+1.2
1,114,729	+				+0.8
1,114,730	-				+0.2
1,114,730	-				+0.9
1,114,730	-				+0.3
1,114,760	+				-0.2
1,114,760	+				+0.8
1,114,760	+				-2.5
1,114,761	-				-0.5
1,114,801	-				+0.3
1,114,801	-				-1.3
1,114,802	+				+0.9
1,114,802	+				+0.4
1,114,829	+				+0.6
1,114,915	+				+0.9
1,114,915	+				+0.7
1,114,915	+				+0.1
1,114,915	+				+0.2
1,114,915	+				+0.1
1,114,915	+				+1.0
1,114,915	+				-1.5
1,114,915	+				+1.9
1,114,916	-				+0.2
1,114,916	-				+0.8
1,114,916	-				-2.1
1,115,023	-				-0.5
1,115,045	+				+1.5
1,115,045	+				+1.9
1,115,045	+				+0.8
1,115,083	+				-0.1
1,115,084	-				+0.5
1,115,084	-				+0.4
1,115,084	-				-0.1
1,115,099	+				-1.1
1,115,100	-				+0.3
1,115,116	-				-0.1
1,115,133	+				+0.7
1,115,134	-				+0.1
1,115,134	-				+0.9
1,115,139	-				-0.5
1,115,139	-				-0.2
1,115,187	+				-0.8
1,115,187	+				-0.8
1,115,187	+				-1.7
1,115,187	+				-0.7
1,115,188	-				+0.1
1,115,188	-				+0.5
1,115,188	-				+0.8
1,115,188	-				+0.1
1,115,188	-				-0.5
1,115,239	-				+1.1
1,115,313	+		DZA65_RS05420	0.26	-1.5
1,115,314	-		DZA65_RS05420	0.26	-0.2
1,115,391	+		DZA65_RS05420	0.50	-1.6
1,115,404	+		DZA65_RS05420	0.54	+0.2
1,115,404	+		DZA65_RS05420	0.54	+0.7
1,115,404	+		DZA65_RS05420	0.54	+0.1
1,115,405	-		DZA65_RS05420	0.54	+1.8
1,115,405	-		DZA65_RS05420	0.54	+0.3
1,115,405	-		DZA65_RS05420	0.54	+0.9
1,115,405	-		DZA65_RS05420	0.54	+3.3
1,115,463	-		DZA65_RS05420	0.72	+1.0
1,115,569	+				-0.7
1,115,570	-				-0.8
1,115,570	-				+0.2
1,115,693	+		DZA65_RS05425	0.18	-1.8
1,115,693	+		DZA65_RS05425	0.18	+1.2
1,115,693	+		DZA65_RS05425	0.18	+0.4
1,115,693	+		DZA65_RS05425	0.18	+0.2
1,115,693	+		DZA65_RS05425	0.18	+0.5
1,115,694	-		DZA65_RS05425	0.18	+1.2
1,115,694	-		DZA65_RS05425	0.18	+0.5
1,115,694	-		DZA65_RS05425	0.18	+1.8
1,115,694	-		DZA65_RS05425	0.18	-0.7
1,115,694	-		DZA65_RS05425	0.18	+0.1
1,115,694	-		DZA65_RS05425	0.18	-0.1
1,115,694	-		DZA65_RS05425	0.18	-0.2
1,115,694	-		DZA65_RS05425	0.18	-2.1
1,115,694	-		DZA65_RS05425	0.18	-0.9
1,115,697	+		DZA65_RS05425	0.18	+0.5
1,115,702	+		DZA65_RS05425	0.19	+0.2
1,115,702	+				+0.5
1,115,702	+		DZA65_RS05425	0.19	+2.1
1,115,702	+		DZA65_RS05425	0.19	-0.7
1,115,703	-		DZA65_RS05425	0.19	+0.5
1,115,768	+		DZA65_RS05425	0.27	-0.3
1,115,809	+		DZA65_RS05425	0.32	+0.6
1,115,809	+		DZA65_RS05425	0.32	-0.7
1,115,809	+		DZA65_RS05425	0.32	-0.5
1,115,810	-		DZA65_RS05425	0.33	-1.1
1,115,810	-		DZA65_RS05425	0.33	-0.6
1,115,830	+		DZA65_RS05425	0.35	-1.6
1,115,830	+		DZA65_RS05425	0.35	-0.5
1,115,830	+		DZA65_RS05425	0.35	-0.9
1,115,857	+		DZA65_RS05425	0.39	-0.3
1,115,893	-		DZA65_RS05425	0.43	+0.7
1,115,896	+		DZA65_RS05425	0.44	+1.2
1,115,896	+		DZA65_RS05425	0.44	-1.4
1,115,896	+		DZA65_RS05425	0.44	+0.9
1,115,897	-		DZA65_RS05425	0.44	+1.9
1,115,897	-		DZA65_RS05425	0.44	+0.3
1,115,897	-		DZA65_RS05425	0.44	+0.6
1,115,897	-		DZA65_RS05425	0.44	+0.8
1,115,897	-		DZA65_RS05425	0.44	+1.0
1,116,054	+		DZA65_RS05425	0.64	-0.7
1,116,054	+		DZA65_RS05425	0.64	+0.4
1,116,054	+		DZA65_RS05425	0.64	+0.8
1,116,054	+		DZA65_RS05425	0.64	-1.6
1,116,054	+		DZA65_RS05425	0.64	-0.2
1,116,054	+				-0.5
1,116,055	-		DZA65_RS05425	0.64	-0.9
1,116,055	-		DZA65_RS05425	0.64	+0.9
1,116,055	-		DZA65_RS05425	0.64	-2.1
1,116,055	-		DZA65_RS05425	0.64	-2.5
1,116,242	+		DZA65_RS05425	0.88	-0.1
1,116,242	+		DZA65_RS05425	0.88	-0.5
1,116,242	+		DZA65_RS05425	0.88	+0.5
1,116,243	-		DZA65_RS05425	0.88	-1.5
1,116,243	-		DZA65_RS05425	0.88	+0.8
1,116,243	-		DZA65_RS05425	0.88	-0.2
1,116,243	-		DZA65_RS05425	0.88	-0.5
1,116,243	-		DZA65_RS05425	0.88	+0.5
1,116,243	-		DZA65_RS05425	0.88	-1.1
1,116,243	-		DZA65_RS05425	0.88	+2.2
1,116,337	+				-0.5
1,116,337	+				+0.1
1,116,338	-				+0.8
1,116,338	-				+0.2
1,116,338	-				-0.6
1,116,338	-				+1.5
1,116,392	-				-0.6
1,116,392	-				+1.2
1,116,392	-				-0.7
1,116,455	+		DZA65_RS05430	0.21	-0.8
1,116,456	-		DZA65_RS05430	0.22	-0.8
1,116,480	-		DZA65_RS05430	0.27	+0.9
1,116,480	-		DZA65_RS05430	0.27	+0.4
1,116,496	+		DZA65_RS05430	0.30	-0.1
1,116,496	+		DZA65_RS05430	0.30	+0.5
1,116,496	+		DZA65_RS05430	0.30	+1.5
1,116,497	-		DZA65_RS05430	0.31	-0.1