Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04815

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04810 and DZA65_RS04815 overlap by 17 nucleotidesDZA65_RS04815 and DZA65_RS04820 overlap by 4 nucleotidesDZA65_RS04820 and DZA65_RS04825 are separated by 28 nucleotides DZA65_RS04810: DZA65_RS04810 - hypothetical protein, at 997,840 to 998,865 _RS04810 DZA65_RS04815: DZA65_RS04815 - hypothetical protein, at 998,849 to 999,220 _RS04815 DZA65_RS04820: DZA65_RS04820 - hypothetical protein, at 999,217 to 999,627 _RS04820 DZA65_RS04825: DZA65_RS04825 - replicative DNA helicase, at 999,656 to 1,000,993 _RS04825 Position (kb) 998 999 1000Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 998.003 kb on - strand, within DZA65_RS04810at 998.003 kb on - strand, within DZA65_RS04810at 998.088 kb on - strand, within DZA65_RS04810at 998.088 kb on - strand, within DZA65_RS04810at 998.104 kb on - strand, within DZA65_RS04810at 998.158 kb on - strand, within DZA65_RS04810at 998.170 kb on - strand, within DZA65_RS04810at 998.170 kb on - strand, within DZA65_RS04810at 998.170 kb on - strand, within DZA65_RS04810at 998.170 kb on - strand, within DZA65_RS04810at 998.211 kb on - strand, within DZA65_RS04810at 998.211 kb on - strand, within DZA65_RS04810at 998.211 kb on - strand, within DZA65_RS04810at 998.211 kb on - strand, within DZA65_RS04810at 998.211 kb on - strand, within DZA65_RS04810at 998.214 kb on - strand, within DZA65_RS04810at 998.214 kb on - strand, within DZA65_RS04810at 998.230 kb on - strand, within DZA65_RS04810at 998.230 kb on - strand, within DZA65_RS04810at 998.230 kb on - strand, within DZA65_RS04810at 998.230 kb on - strand, within DZA65_RS04810at 998.230 kb on - strand, within DZA65_RS04810at 998.234 kb on - strand, within DZA65_RS04810at 998.248 kb on - strand, within DZA65_RS04810at 998.263 kb on - strand, within DZA65_RS04810at 998.293 kb on + strand, within DZA65_RS04810at 998.293 kb on + strand, within DZA65_RS04810at 998.294 kb on - strand, within DZA65_RS04810at 998.329 kb on - strand, within DZA65_RS04810at 998.330 kb on - strand, within DZA65_RS04810at 998.330 kb on - strand, within DZA65_RS04810at 998.331 kb on + strand, within DZA65_RS04810at 998.332 kb on - strand, within DZA65_RS04810at 998.332 kb on - strand, within DZA65_RS04810at 998.332 kb on - strand, within DZA65_RS04810at 998.338 kb on - strand, within DZA65_RS04810at 998.396 kb on - strand, within DZA65_RS04810at 998.396 kb on - strand, within DZA65_RS04810at 998.426 kb on + strand, within DZA65_RS04810at 998.426 kb on + strand, within DZA65_RS04810at 998.427 kb on - strand, within DZA65_RS04810at 998.427 kb on - strand, within DZA65_RS04810at 998.466 kb on - strand, within DZA65_RS04810at 998.466 kb on - strand, within DZA65_RS04810at 998.466 kb on - strand, within DZA65_RS04810at 998.466 kb on - strand, within DZA65_RS04810at 998.466 kb on - strand, within DZA65_RS04810at 998.466 kb on - strand, within DZA65_RS04810at 998.468 kb on - strand, within DZA65_RS04810at 998.468 kb on - strand, within DZA65_RS04810at 998.468 kb on - strand, within DZA65_RS04810at 998.468 kb on - strand, within DZA65_RS04810at 998.468 kb on - strand, within DZA65_RS04810at 998.468 kb on - strand, within DZA65_RS04810at 998.468 kb on - strand, within DZA65_RS04810at 998.468 kb on - strand, within DZA65_RS04810at 998.468 kb on - strand, within DZA65_RS04810at 998.490 kb on - strand, within DZA65_RS04810at 998.490 kb on - strand, within DZA65_RS04810at 998.490 kb on - strand, within DZA65_RS04810at 998.514 kb on - strand, within DZA65_RS04810at 998.514 kb on - strand, within DZA65_RS04810at 998.514 kb on - strand, within DZA65_RS04810at 998.522 kb on + strand, within DZA65_RS04810at 998.523 kb on - strand, within DZA65_RS04810at 998.523 kb on - strand, within DZA65_RS04810at 998.569 kb on - strand, within DZA65_RS04810at 998.569 kb on - strand, within DZA65_RS04810at 998.583 kb on - strand, within DZA65_RS04810at 998.583 kb on - strand, within DZA65_RS04810at 998.583 kb on - strand, within DZA65_RS04810at 998.583 kb on - strand, within DZA65_RS04810at 998.587 kb on - strand, within DZA65_RS04810at 998.587 kb on - strand, within DZA65_RS04810at 998.587 kb on - strand, within DZA65_RS04810at 998.595 kb on - strand, within DZA65_RS04810at 998.606 kb on - strand, within DZA65_RS04810at 998.652 kb on - strand, within DZA65_RS04810at 998.652 kb on - strand, within DZA65_RS04810at 998.652 kb on - strand, within DZA65_RS04810at 998.652 kb on - strand, within DZA65_RS04810at 998.652 kb on - strand, within DZA65_RS04810at 998.675 kb on - strand, within DZA65_RS04810at 998.675 kb on - strand, within DZA65_RS04810at 998.701 kb on - strand, within DZA65_RS04810at 998.701 kb on - strand, within DZA65_RS04810at 998.733 kb on - strand, within DZA65_RS04810at 998.733 kb on - strand, within DZA65_RS04810at 998.864 kb on - strandat 998.974 kb on - strand, within DZA65_RS04815at 998.984 kb on - strand, within DZA65_RS04815at 998.984 kb on - strand, within DZA65_RS04815at 998.984 kb on - strand, within DZA65_RS04815at 999.025 kb on - strand, within DZA65_RS04815at 999.095 kb on - strand, within DZA65_RS04815at 999.095 kb on - strand, within DZA65_RS04815at 999.095 kb on - strand, within DZA65_RS04815at 999.095 kb on - strand, within DZA65_RS04815at 999.095 kb on - strand, within DZA65_RS04815at 999.095 kb on - strand, within DZA65_RS04815at 999.095 kb on - strand, within DZA65_RS04815at 999.097 kb on - strand, within DZA65_RS04815at 999.097 kb on - strand, within DZA65_RS04815at 999.097 kb on - strand, within DZA65_RS04815at 999.097 kb on - strand, within DZA65_RS04815at 999.138 kb on - strand, within DZA65_RS04815at 999.138 kb on - strand, within DZA65_RS04815at 999.166 kb on - strand, within DZA65_RS04815at 999.166 kb on - strand, within DZA65_RS04815at 999.175 kb on + strand, within DZA65_RS04815at 999.176 kb on - strand, within DZA65_RS04815at 999.372 kb on + strand, within DZA65_RS04820at 999.372 kb on + strand, within DZA65_RS04820at 999.373 kb on - strand, within DZA65_RS04820at 999.379 kb on + strand, within DZA65_RS04820at 999.379 kb on + strand, within DZA65_RS04820at 999.379 kb on + strand, within DZA65_RS04820at 999.380 kb on - strand, within DZA65_RS04820at 999.380 kb on - strand, within DZA65_RS04820at 999.380 kb on - strand, within DZA65_RS04820at 999.380 kb on - strand, within DZA65_RS04820at 999.382 kb on + strand, within DZA65_RS04820at 999.382 kb on + strand, within DZA65_RS04820at 999.382 kb on + strand, within DZA65_RS04820at 999.382 kb on + strand, within DZA65_RS04820at 999.382 kb on + strand, within DZA65_RS04820at 999.383 kb on - strand, within DZA65_RS04820at 999.383 kb on - strand, within DZA65_RS04820at 999.383 kb on - strand, within DZA65_RS04820at 999.383 kb on - strand, within DZA65_RS04820at 999.383 kb on - strand, within DZA65_RS04820at 999.383 kb on - strand, within DZA65_RS04820at 999.383 kb on - strand, within DZA65_RS04820at 999.383 kb on - strand, within DZA65_RS04820at 999.383 kb on - strand, within DZA65_RS04820at 999.383 kb on - strand, within DZA65_RS04820at 999.504 kb on - strand, within DZA65_RS04820at 999.504 kb on - strand, within DZA65_RS04820at 999.518 kb on - strand, within DZA65_RS04820at 999.625 kb on + strandat 999.635 kb on - strandat 999.718 kb on + strandat 999.793 kb on + strand, within DZA65_RS04825at 999.855 kb on - strand, within DZA65_RS04825at 999.855 kb on - strand, within DZA65_RS04825at 999.855 kb on - strand, within DZA65_RS04825at 999.855 kb on - strand, within DZA65_RS04825at 999.871 kb on + strand, within DZA65_RS04825at 999.871 kb on + strand, within DZA65_RS04825at 999.871 kb on + strand, within DZA65_RS04825at 999.881 kb on - strand, within DZA65_RS04825at 999.881 kb on - strand, within DZA65_RS04825at 999.905 kb on + strand, within DZA65_RS04825at 999.905 kb on + strand, within DZA65_RS04825at 999.906 kb on - strand, within DZA65_RS04825at 999.906 kb on - strand, within DZA65_RS04825at 999.906 kb on - strand, within DZA65_RS04825at 999.906 kb on - strand, within DZA65_RS04825at 999.956 kb on + strand, within DZA65_RS04825at 999.956 kb on + strand, within DZA65_RS04825at 999.956 kb on + strand, within DZA65_RS04825at 999.956 kb on + strand, within DZA65_RS04825at 999.957 kb on - strand, within DZA65_RS04825at 999.957 kb on - strand, within DZA65_RS04825at 999.957 kb on - strand, within DZA65_RS04825at 1000.000 kb on + strand, within DZA65_RS04825at 1000.000 kb on + strand, within DZA65_RS04825at 1000.001 kb on - strand, within DZA65_RS04825at 1000.001 kb on - strand, within DZA65_RS04825at 1000.001 kb on - strand, within DZA65_RS04825at 1000.048 kb on + strand, within DZA65_RS04825at 1000.048 kb on + strand, within DZA65_RS04825at 1000.048 kb on + strand, within DZA65_RS04825at 1000.049 kb on - strand, within DZA65_RS04825at 1000.049 kb on - strand, within DZA65_RS04825at 1000.049 kb on - strand, within DZA65_RS04825at 1000.049 kb on - strand, within DZA65_RS04825at 1000.049 kb on - strand, within DZA65_RS04825at 1000.051 kb on + strand, within DZA65_RS04825at 1000.052 kb on - strand, within DZA65_RS04825at 1000.083 kb on + strand, within DZA65_RS04825at 1000.083 kb on + strand, within DZA65_RS04825at 1000.084 kb on - strand, within DZA65_RS04825at 1000.084 kb on - strand, within DZA65_RS04825at 1000.084 kb on - strand, within DZA65_RS04825at 1000.138 kb on + strand, within DZA65_RS04825at 1000.138 kb on + strand, within DZA65_RS04825at 1000.139 kb on - strand, within DZA65_RS04825at 1000.139 kb on - strand, within DZA65_RS04825at 1000.139 kb on - strand, within DZA65_RS04825at 1000.149 kb on + strandat 1000.149 kb on + strand, within DZA65_RS04825at 1000.149 kb on + strand, within DZA65_RS04825at 1000.149 kb on + strand, within DZA65_RS04825at 1000.150 kb on - strandat 1000.171 kb on + strand, within DZA65_RS04825at 1000.198 kb on + strand, within DZA65_RS04825at 1000.199 kb on - strand, within DZA65_RS04825

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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998,003 - DZA65_RS04810 0.16 -1.0
998,003 - DZA65_RS04810 0.16 +0.4
998,088 - DZA65_RS04810 0.24 -2.0
998,088 - DZA65_RS04810 0.24 +0.1
998,104 - DZA65_RS04810 0.26 +2.9
998,158 - DZA65_RS04810 0.31 -1.7
998,170 - DZA65_RS04810 0.32 +1.3
998,170 - DZA65_RS04810 0.32 +1.1
998,170 - DZA65_RS04810 0.32 +0.0
998,170 - DZA65_RS04810 0.32 -0.4
998,211 - DZA65_RS04810 0.36 -0.1
998,211 - DZA65_RS04810 0.36 +1.1
998,211 - DZA65_RS04810 0.36 -1.9
998,211 - DZA65_RS04810 0.36 -0.4
998,211 - DZA65_RS04810 0.36 -0.9
998,214 - DZA65_RS04810 0.36 +0.3
998,214 - DZA65_RS04810 0.36 +0.5
998,230 - DZA65_RS04810 0.38 -1.2
998,230 - DZA65_RS04810 0.38 -0.2
998,230 - DZA65_RS04810 0.38 -0.8
998,230 - DZA65_RS04810 0.38 -0.7
998,230 - DZA65_RS04810 0.38 -0.0
998,234 - DZA65_RS04810 0.38 -0.9
998,248 - DZA65_RS04810 0.40 -1.0
998,263 - DZA65_RS04810 0.41 -1.8
998,293 + DZA65_RS04810 0.44 +0.2
998,293 + DZA65_RS04810 0.44 -3.0
998,294 - DZA65_RS04810 0.44 -0.8
998,329 - DZA65_RS04810 0.48 +1.8
998,330 - DZA65_RS04810 0.48 +1.0
998,330 - DZA65_RS04810 0.48 +0.2
998,331 + DZA65_RS04810 0.48 -0.0
998,332 - DZA65_RS04810 0.48 +1.1
998,332 - DZA65_RS04810 0.48 -0.5
998,332 - DZA65_RS04810 0.48 +0.5
998,338 - DZA65_RS04810 0.49 -0.3
998,396 - DZA65_RS04810 0.54 -0.0
998,396 - DZA65_RS04810 0.54 +0.3
998,426 + DZA65_RS04810 0.57 -0.5
998,426 + DZA65_RS04810 0.57 -1.0
998,427 - DZA65_RS04810 0.57 -0.3
998,427 - DZA65_RS04810 0.57 +0.3
998,466 - DZA65_RS04810 0.61 -0.5
998,466 - DZA65_RS04810 0.61 -2.6
998,466 - DZA65_RS04810 0.61 -1.8
998,466 - DZA65_RS04810 0.61 +1.1
998,466 - DZA65_RS04810 0.61 -1.3
998,466 - DZA65_RS04810 0.61 +0.3
998,468 - DZA65_RS04810 0.61 +0.8
998,468 - DZA65_RS04810 0.61 -0.7
998,468 - DZA65_RS04810 0.61 +0.9
998,468 - DZA65_RS04810 0.61 -0.4
998,468 - DZA65_RS04810 0.61 -0.8
998,468 - DZA65_RS04810 0.61 +0.9
998,468 - DZA65_RS04810 0.61 +1.5
998,468 - DZA65_RS04810 0.61 +1.0
998,468 - DZA65_RS04810 0.61 -1.3
998,490 - DZA65_RS04810 0.63 +0.1
998,490 - DZA65_RS04810 0.63 -1.2
998,490 - DZA65_RS04810 0.63 -3.0
998,514 - DZA65_RS04810 0.66 -1.5
998,514 - DZA65_RS04810 0.66 +0.1
998,514 - DZA65_RS04810 0.66 +0.1
998,522 + DZA65_RS04810 0.66 +0.5
998,523 - DZA65_RS04810 0.67 +2.1
998,523 - DZA65_RS04810 0.67 +0.3
998,569 - DZA65_RS04810 0.71 -0.1
998,569 - DZA65_RS04810 0.71 +0.8
998,583 - DZA65_RS04810 0.72 +1.1
998,583 - DZA65_RS04810 0.72 +0.3
998,583 - DZA65_RS04810 0.72 -1.7
998,583 - DZA65_RS04810 0.72 +1.0
998,587 - DZA65_RS04810 0.73 +0.7
998,587 - DZA65_RS04810 0.73 +0.3
998,587 - DZA65_RS04810 0.73 +0.5
998,595 - DZA65_RS04810 0.74 +0.3
998,606 - DZA65_RS04810 0.75 -1.0
998,652 - DZA65_RS04810 0.79 -0.5
998,652 - DZA65_RS04810 0.79 +0.2
998,652 - DZA65_RS04810 0.79 -0.3
998,652 - DZA65_RS04810 0.79 -0.8
998,652 - DZA65_RS04810 0.79 +1.3
998,675 - DZA65_RS04810 0.81 -1.8
998,675 - DZA65_RS04810 0.81 -0.8
998,701 - DZA65_RS04810 0.84 +0.6
998,701 - DZA65_RS04810 0.84 -0.1
998,733 - DZA65_RS04810 0.87 +0.5
998,733 - DZA65_RS04810 0.87 -1.8
998,864 - +0.9
998,974 - DZA65_RS04815 0.34 -0.6
998,984 - DZA65_RS04815 0.36 -1.5
998,984 - DZA65_RS04815 0.36 -0.3
998,984 - DZA65_RS04815 0.36 +0.7
999,025 - DZA65_RS04815 0.47 +0.1
999,095 - DZA65_RS04815 0.66 -0.4
999,095 - DZA65_RS04815 0.66 -0.6
999,095 - DZA65_RS04815 0.66 +0.3
999,095 - DZA65_RS04815 0.66 -0.5
999,095 - DZA65_RS04815 0.66 +1.1
999,095 - DZA65_RS04815 0.66 +0.5
999,095 - DZA65_RS04815 0.66 +1.0
999,097 - DZA65_RS04815 0.67 -0.8
999,097 - DZA65_RS04815 0.67 -2.5
999,097 - DZA65_RS04815 0.67 -0.3
999,097 - DZA65_RS04815 0.67 +0.2
999,138 - DZA65_RS04815 0.78 -2.9
999,138 - DZA65_RS04815 0.78 -0.5
999,166 - DZA65_RS04815 0.85 +0.0
999,166 - DZA65_RS04815 0.85 +0.5
999,175 + DZA65_RS04815 0.88 -1.5
999,176 - DZA65_RS04815 0.88 -0.5
999,372 + DZA65_RS04820 0.38 -2.4
999,372 + DZA65_RS04820 0.38 -1.1
999,373 - DZA65_RS04820 0.38 -1.0
999,379 + DZA65_RS04820 0.39 +0.5
999,379 + DZA65_RS04820 0.39 -1.8
999,379 + DZA65_RS04820 0.39 -2.2
999,380 - DZA65_RS04820 0.40 +0.7
999,380 - DZA65_RS04820 0.40 +0.2
999,380 - DZA65_RS04820 0.40 +0.2
999,380 - DZA65_RS04820 0.40 -0.5
999,382 + DZA65_RS04820 0.40 -2.0
999,382 + DZA65_RS04820 0.40 +1.1
999,382 + DZA65_RS04820 0.40 -1.8
999,382 + DZA65_RS04820 0.40 +0.5
999,382 + DZA65_RS04820 0.40 +0.9
999,383 - DZA65_RS04820 0.40 -0.1
999,383 - DZA65_RS04820 0.40 +0.1
999,383 - DZA65_RS04820 0.40 +1.3
999,383 - DZA65_RS04820 0.40 -1.5
999,383 - DZA65_RS04820 0.40 -3.2
999,383 - DZA65_RS04820 0.40 +0.3
999,383 - DZA65_RS04820 0.40 -0.6
999,383 - DZA65_RS04820 0.40 +1.1
999,383 - DZA65_RS04820 0.40 -0.3
999,383 - DZA65_RS04820 0.40 -0.2
999,504 - DZA65_RS04820 0.70 +1.0
999,504 - DZA65_RS04820 0.70 -0.8
999,518 - DZA65_RS04820 0.73 +0.2
999,625 + -1.5
999,635 - -2.0
999,718 + +0.9
999,793 + DZA65_RS04825 0.10 -0.0
999,855 - DZA65_RS04825 0.15 +0.4
999,855 - DZA65_RS04825 0.15 -1.0
999,855 - DZA65_RS04825 0.15 +0.5
999,855 - DZA65_RS04825 0.15 +0.3
999,871 + DZA65_RS04825 0.16 -0.0
999,871 + DZA65_RS04825 0.16 -0.5
999,871 + DZA65_RS04825 0.16 -0.8
999,881 - DZA65_RS04825 0.17 +0.1
999,881 - DZA65_RS04825 0.17 +0.7
999,905 + DZA65_RS04825 0.19 +0.4
999,905 + DZA65_RS04825 0.19 -0.0
999,906 - DZA65_RS04825 0.19 +0.1
999,906 - DZA65_RS04825 0.19 +0.5
999,906 - DZA65_RS04825 0.19 +1.9
999,906 - DZA65_RS04825 0.19 -0.2
999,956 + DZA65_RS04825 0.22 -1.0
999,956 + DZA65_RS04825 0.22 +1.1
999,956 + DZA65_RS04825 0.22 +0.2
999,956 + DZA65_RS04825 0.22 +2.0
999,957 - DZA65_RS04825 0.22 -0.1
999,957 - DZA65_RS04825 0.22 -0.2
999,957 - DZA65_RS04825 0.22 +0.1
1,000,000 + DZA65_RS04825 0.26 +0.3
1,000,000 + DZA65_RS04825 0.26 -0.3
1,000,001 - DZA65_RS04825 0.26 -1.3
1,000,001 - DZA65_RS04825 0.26 +1.0
1,000,001 - DZA65_RS04825 0.26 -1.3
1,000,048 + DZA65_RS04825 0.29 -0.9
1,000,048 + DZA65_RS04825 0.29 -1.0
1,000,048 + DZA65_RS04825 0.29 -1.0
1,000,049 - DZA65_RS04825 0.29 +1.3
1,000,049 - DZA65_RS04825 0.29 -2.6
1,000,049 - DZA65_RS04825 0.29 -0.2
1,000,049 - DZA65_RS04825 0.29 +1.3
1,000,049 - DZA65_RS04825 0.29 -0.6
1,000,051 + DZA65_RS04825 0.30 -1.0
1,000,052 - DZA65_RS04825 0.30 +0.8
1,000,083 + DZA65_RS04825 0.32 -1.0
1,000,083 + DZA65_RS04825 0.32 -0.5
1,000,084 - DZA65_RS04825 0.32 +0.3
1,000,084 - DZA65_RS04825 0.32 +0.5
1,000,084 - DZA65_RS04825 0.32 -0.5
1,000,138 + DZA65_RS04825 0.36 -0.5
1,000,138 + DZA65_RS04825 0.36 -0.1
1,000,139 - DZA65_RS04825 0.36 +0.5
1,000,139 - DZA65_RS04825 0.36 +1.9
1,000,139 - DZA65_RS04825 0.36 -1.0
1,000,149 + -1.5
1,000,149 + DZA65_RS04825 0.37 -1.0
1,000,149 + DZA65_RS04825 0.37 +0.5
1,000,149 + DZA65_RS04825 0.37 -0.6
1,000,150 - -0.5
1,000,171 + DZA65_RS04825 0.38 -0.9
1,000,198 + DZA65_RS04825 0.41 -0.2
1,000,199 - DZA65_RS04825 0.41 -0.9

Or see this region's nucleotide sequence