Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04355 and DZA65_RS04360 are separated by 47 nucleotides DZA65_RS04360 and DZA65_RS04370 are separated by 424 nucleotides DZA65_RS04370 and DZA65_RS04375 are separated by 175 nucleotides
DZA65_RS04355: DZA65_RS04355 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 908,812 to 910,539
_RS04355
DZA65_RS04360: DZA65_RS04360 - phosphocarrier protein Hpr, at 910,587 to 910,844
_RS04360
DZA65_RS04370: DZA65_RS04370 - cysteine synthase A, at 911,269 to 912,237
_RS04370
DZA65_RS04375: DZA65_RS04375 - sulfate transporter CysZ, at 912,413 to 913,183
_RS04375
Position (kb) 911
912
913 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 910.311 kb on + strand, within DZA65_RS04355 at 910.311 kb on + strand, within DZA65_RS04355 at 910.312 kb on - strand, within DZA65_RS04355 at 910.371 kb on + strand at 910.486 kb on + strand at 910.519 kb on + strand at 910.522 kb on + strand at 910.523 kb on - strand at 910.523 kb on - strand at 910.523 kb on - strand at 910.525 kb on + strand at 910.525 kb on + strand at 910.526 kb on - strand at 910.550 kb on + strand at 910.551 kb on - strand at 910.551 kb on - strand at 910.551 kb on - strand at 910.827 kb on + strand at 910.828 kb on - strand at 910.900 kb on + strand at 910.900 kb on + strand at 910.900 kb on + strand at 910.900 kb on + strand at 910.901 kb on - strand at 910.901 kb on - strand at 910.901 kb on - strand at 910.901 kb on - strand at 910.904 kb on + strand at 910.904 kb on + strand at 910.905 kb on - strand at 910.915 kb on - strand at 910.915 kb on - strand at 910.915 kb on - strand at 911.068 kb on + strand at 911.068 kb on + strand at 911.069 kb on - strand at 911.074 kb on + strand at 911.074 kb on + strand at 911.075 kb on - strand at 911.095 kb on - strand at 911.135 kb on - strand at 911.161 kb on - strand at 911.161 kb on - strand at 911.161 kb on - strand at 911.216 kb on + strand at 911.251 kb on + strand at 911.263 kb on + strand at 911.264 kb on - strand at 911.270 kb on + strand at 911.270 kb on + strand at 911.271 kb on - strand at 911.271 kb on - strand at 911.316 kb on + strand at 911.350 kb on + strand at 911.350 kb on + strand at 911.351 kb on - strand at 911.538 kb on + strand, within DZA65_RS04370 at 911.539 kb on - strand, within DZA65_RS04370 at 911.675 kb on + strand, within DZA65_RS04370 at 911.676 kb on - strand, within DZA65_RS04370 at 911.676 kb on - strand, within DZA65_RS04370 at 911.825 kb on + strand, within DZA65_RS04370 at 911.826 kb on - strand, within DZA65_RS04370 at 911.946 kb on + strand, within DZA65_RS04370 at 911.946 kb on + strand, within DZA65_RS04370 at 911.946 kb on + strand, within DZA65_RS04370 at 911.946 kb on + strand, within DZA65_RS04370 at 911.947 kb on - strand, within DZA65_RS04370 at 911.947 kb on - strand, within DZA65_RS04370 at 911.979 kb on + strand, within DZA65_RS04370 at 911.980 kb on - strand, within DZA65_RS04370 at 911.980 kb on - strand, within DZA65_RS04370 at 912.002 kb on + strand, within DZA65_RS04370 at 912.003 kb on - strand, within DZA65_RS04370 at 912.022 kb on - strand, within DZA65_RS04370 at 912.041 kb on - strand, within DZA65_RS04370 at 912.041 kb on - strand, within DZA65_RS04370 at 912.157 kb on - strand at 912.157 kb on - strand at 912.196 kb on - strand at 912.224 kb on + strand at 912.225 kb on - strand at 912.225 kb on - strand at 912.231 kb on + strand at 912.231 kb on + strand at 912.232 kb on - strand at 912.232 kb on - strand at 912.232 kb on - strand at 912.238 kb on - strand at 912.248 kb on + strand at 912.252 kb on - strand at 912.252 kb on - strand at 912.287 kb on - strand at 912.287 kb on - strand at 912.312 kb on - strand at 912.312 kb on - strand at 912.318 kb on + strand at 912.318 kb on + strand at 912.318 kb on + strand at 912.319 kb on - strand at 912.319 kb on - strand at 912.319 kb on - strand at 912.319 kb on - strand at 912.319 kb on - strand at 912.322 kb on + strand at 912.322 kb on + strand at 912.322 kb on + strand at 912.323 kb on - strand at 912.323 kb on - strand at 912.323 kb on - strand at 912.323 kb on - strand at 912.323 kb on - strand at 912.323 kb on - strand at 912.331 kb on - strand at 912.346 kb on - strand at 912.346 kb on - strand at 912.367 kb on + strand at 912.368 kb on - strand at 912.368 kb on - strand at 912.369 kb on + strand at 912.370 kb on - strand at 912.376 kb on + strand at 912.376 kb on + strand at 912.376 kb on + strand at 912.376 kb on + strand at 912.376 kb on + strand at 912.377 kb on - strand at 912.377 kb on - strand at 912.377 kb on - strand at 912.377 kb on - strand at 912.377 kb on - strand at 912.380 kb on - strand at 912.414 kb on + strand at 912.414 kb on + strand at 912.414 kb on + strand at 912.414 kb on + strand at 912.415 kb on - strand at 912.415 kb on - strand at 912.415 kb on - strand at 912.415 kb on - strand at 912.415 kb on - strand at 912.447 kb on + strand at 912.493 kb on + strand, within DZA65_RS04375 at 912.523 kb on + strand, within DZA65_RS04375 at 912.523 kb on + strand, within DZA65_RS04375 at 912.523 kb on + strand, within DZA65_RS04375 at 912.523 kb on + strand, within DZA65_RS04375 at 912.524 kb on - strand, within DZA65_RS04375 at 912.524 kb on - strand, within DZA65_RS04375 at 912.524 kb on - strand, within DZA65_RS04375 at 912.527 kb on + strand, within DZA65_RS04375 at 912.527 kb on + strand, within DZA65_RS04375 at 912.527 kb on + strand, within DZA65_RS04375 at 912.527 kb on + strand, within DZA65_RS04375 at 912.527 kb on + strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.625 kb on - strand, within DZA65_RS04375 at 912.633 kb on + strand, within DZA65_RS04375 at 912.731 kb on + strand, within DZA65_RS04375 at 912.731 kb on + strand, within DZA65_RS04375 at 912.731 kb on + strand, within DZA65_RS04375 at 912.731 kb on + strand, within DZA65_RS04375 at 912.732 kb on - strand, within DZA65_RS04375 at 912.732 kb on - strand, within DZA65_RS04375 at 912.744 kb on + strand, within DZA65_RS04375 at 912.744 kb on + strand, within DZA65_RS04375 at 912.744 kb on + strand, within DZA65_RS04375 at 912.745 kb on - strand, within DZA65_RS04375 at 912.745 kb on - strand, within DZA65_RS04375 at 912.745 kb on - strand, within DZA65_RS04375 at 912.745 kb on - strand, within DZA65_RS04375 at 912.745 kb on - strand, within DZA65_RS04375 at 912.747 kb on + strand, within DZA65_RS04375 at 912.747 kb on + strand, within DZA65_RS04375 at 912.748 kb on - strand, within DZA65_RS04375 at 912.748 kb on - strand, within DZA65_RS04375 at 912.752 kb on + strand, within DZA65_RS04375 at 912.752 kb on + strand, within DZA65_RS04375 at 912.752 kb on + strand, within DZA65_RS04375 at 912.898 kb on + strand, within DZA65_RS04375 at 912.898 kb on + strand at 912.899 kb on - strand, within DZA65_RS04375 at 912.912 kb on + strand, within DZA65_RS04375 at 912.912 kb on + strand, within DZA65_RS04375 at 912.912 kb on + strand, within DZA65_RS04375 at 912.913 kb on - strand, within DZA65_RS04375 at 912.913 kb on - strand, within DZA65_RS04375 at 912.913 kb on - strand, within DZA65_RS04375 at 912.913 kb on - strand, within DZA65_RS04375 at 912.913 kb on - strand, within DZA65_RS04375 at 912.913 kb on - strand, within DZA65_RS04375 at 912.920 kb on + strand, within DZA65_RS04375 at 912.920 kb on + strand, within DZA65_RS04375 at 912.920 kb on + strand, within DZA65_RS04375 at 912.920 kb on + strand, within DZA65_RS04375 at 912.961 kb on - strand, within DZA65_RS04375 at 912.961 kb on - strand, within DZA65_RS04375 at 912.961 kb on - strand, within DZA65_RS04375 at 912.961 kb on - strand, within DZA65_RS04375 at 912.961 kb on - strand, within DZA65_RS04375 at 913.063 kb on + strand, within DZA65_RS04375 at 913.067 kb on - strand, within DZA65_RS04375 at 913.137 kb on + strand at 913.137 kb on + strand at 913.137 kb on + strand at 913.137 kb on + strand at 913.138 kb on - strand at 913.177 kb on - strand at 913.177 kb on - strand at 913.183 kb on + strand at 913.183 kb on + strand at 913.183 kb on + strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.186 kb on + strand at 913.186 kb on + strand at 913.186 kb on + strand at 913.187 kb on - strand at 913.187 kb on - strand at 913.200 kb on + strand at 913.200 kb on + strand at 913.201 kb on - strand at 913.201 kb on - strand at 913.205 kb on + strand at 913.206 kb on - strand at 913.206 kb on - strand at 913.224 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 910,311 + DZA65_RS04355 0.87 -1.0 910,311 + DZA65_RS04355 0.87 -1.1 910,312 - DZA65_RS04355 0.87 -1.9 910,371 + -2.4 910,486 + -1.2 910,519 + -1.0 910,522 + -2.2 910,523 - -1.4 910,523 - -0.4 910,523 - -0.7 910,525 + -1.4 910,525 + -1.4 910,526 - -0.4 910,550 + -2.2 910,551 - -2.4 910,551 - -0.8 910,551 - -1.0 910,827 + -0.4 910,828 - -2.2 910,900 + -0.0 910,900 + -0.4 910,900 + -0.0 910,900 + +0.4 910,901 - -0.8 910,901 - -2.0 910,901 - -1.4 910,901 - +0.1 910,904 + -1.8 910,904 + -1.0 910,905 - -1.0 910,915 - +0.6 910,915 - -0.4 910,915 - -0.2 911,068 + -1.2 911,068 + -0.3 911,069 - +0.6 911,074 + -1.4 911,074 + +0.3 911,075 - -1.0 911,095 - +1.6 911,135 - -0.8 911,161 - -0.5 911,161 - +1.6 911,161 - +2.2 911,216 + +0.6 911,251 + +0.2 911,263 + +0.3 911,264 - -0.0 911,270 + -0.6 911,270 + -1.4 911,271 - +1.9 911,271 - -0.2 911,316 + -1.4 911,350 + +0.2 911,350 + -1.0 911,351 - -1.4 911,538 + DZA65_RS04370 0.28 -1.4 911,539 - DZA65_RS04370 0.28 -2.2 911,675 + DZA65_RS04370 0.42 -0.8 911,676 - DZA65_RS04370 0.42 -0.2 911,676 - DZA65_RS04370 0.42 -3.3 911,825 + DZA65_RS04370 0.57 -1.2 911,826 - DZA65_RS04370 0.57 -0.4 911,946 + DZA65_RS04370 0.70 -1.2 911,946 + DZA65_RS04370 0.70 -0.1 911,946 + DZA65_RS04370 0.70 -0.2 911,946 + DZA65_RS04370 0.70 +0.9 911,947 - DZA65_RS04370 0.70 -2.2 911,947 - DZA65_RS04370 0.70 +1.2 911,979 + DZA65_RS04370 0.73 -3.5 911,980 - DZA65_RS04370 0.73 -0.4 911,980 - DZA65_RS04370 0.73 +1.2 912,002 + DZA65_RS04370 0.76 -0.0 912,003 - DZA65_RS04370 0.76 -1.4 912,022 - DZA65_RS04370 0.78 +0.5 912,041 - DZA65_RS04370 0.80 -0.2 912,041 - DZA65_RS04370 0.80 -0.8 912,157 - -0.4 912,157 - -0.4 912,196 - -1.9 912,224 + -0.0 912,225 - +0.6 912,225 - -0.7 912,231 + +1.1 912,231 + -0.2 912,232 - -1.6 912,232 - -2.0 912,232 - -1.4 912,238 - -1.8 912,248 + +2.9 912,252 - +1.1 912,252 - -0.3 912,287 - -0.4 912,287 - -0.1 912,312 - -0.4 912,312 - -0.0 912,318 + -2.2 912,318 + +1.0 912,318 + +0.9 912,319 - -0.7 912,319 - +0.3 912,319 - -0.1 912,319 - -0.8 912,319 - -1.0 912,322 + +0.6 912,322 + -0.9 912,322 + -0.2 912,323 - -0.8 912,323 - +1.1 912,323 - +0.6 912,323 - +0.7 912,323 - +0.6 912,323 - -0.9 912,331 - +1.2 912,346 - -0.4 912,346 - -0.6 912,367 + +0.7 912,368 - +2.4 912,368 - -1.0 912,369 + +0.8 912,370 - -0.3 912,376 + +0.9 912,376 + -1.8 912,376 + -1.8 912,376 + -1.4 912,376 + -0.6 912,377 - +0.7 912,377 - -0.2 912,377 - +0.4 912,377 - +0.6 912,377 - -0.1 912,380 - +0.7 912,414 + +0.4 912,414 + +0.4 912,414 + +0.1 912,414 + -0.2 912,415 - -0.3 912,415 - -1.0 912,415 - +0.4 912,415 - +0.4 912,415 - +0.9 912,447 + +1.4 912,493 + DZA65_RS04375 0.10 -0.4 912,523 + DZA65_RS04375 0.14 -0.2 912,523 + DZA65_RS04375 0.14 -0.4 912,523 + DZA65_RS04375 0.14 -0.5 912,523 + DZA65_RS04375 0.14 -1.0 912,524 - DZA65_RS04375 0.14 +1.1 912,524 - DZA65_RS04375 0.14 -1.3 912,524 - DZA65_RS04375 0.14 +0.0 912,527 + DZA65_RS04375 0.15 -0.0 912,527 + DZA65_RS04375 0.15 +0.1 912,527 + DZA65_RS04375 0.15 +0.6 912,527 + DZA65_RS04375 0.15 -1.6 912,527 + DZA65_RS04375 0.15 -0.7 912,528 - DZA65_RS04375 0.15 -2.2 912,528 - DZA65_RS04375 0.15 +0.0 912,528 - DZA65_RS04375 0.15 +1.1 912,528 - DZA65_RS04375 0.15 +0.7 912,528 - DZA65_RS04375 0.15 +0.2 912,528 - DZA65_RS04375 0.15 -1.0 912,528 - DZA65_RS04375 0.15 -0.1 912,528 - DZA65_RS04375 0.15 +0.6 912,528 - DZA65_RS04375 0.15 +0.7 912,528 - DZA65_RS04375 0.15 -0.4 912,528 - DZA65_RS04375 0.15 -1.0 912,528 - DZA65_RS04375 0.15 -1.0 912,528 - DZA65_RS04375 0.15 +0.6 912,528 - DZA65_RS04375 0.15 +0.2 912,528 - DZA65_RS04375 0.15 +1.7 912,528 - DZA65_RS04375 0.15 -0.3 912,528 - DZA65_RS04375 0.15 +2.9 912,625 - DZA65_RS04375 0.27 -0.4 912,633 + DZA65_RS04375 0.29 +0.9 912,731 + DZA65_RS04375 0.41 +0.6 912,731 + DZA65_RS04375 0.41 -0.9 912,731 + DZA65_RS04375 0.41 +0.2 912,731 + DZA65_RS04375 0.41 -1.2 912,732 - DZA65_RS04375 0.41 +0.6 912,732 - DZA65_RS04375 0.41 +0.6 912,744 + DZA65_RS04375 0.43 +0.3 912,744 + DZA65_RS04375 0.43 -0.3 912,744 + DZA65_RS04375 0.43 +0.6 912,745 - DZA65_RS04375 0.43 -0.8 912,745 - DZA65_RS04375 0.43 +0.6 912,745 - DZA65_RS04375 0.43 -0.8 912,745 - DZA65_RS04375 0.43 -1.2 912,745 - DZA65_RS04375 0.43 +0.6 912,747 + DZA65_RS04375 0.43 -0.8 912,747 + DZA65_RS04375 0.43 -0.1 912,748 - DZA65_RS04375 0.43 -0.9 912,748 - DZA65_RS04375 0.43 +0.3 912,752 + DZA65_RS04375 0.44 +1.0 912,752 + DZA65_RS04375 0.44 +0.8 912,752 + DZA65_RS04375 0.44 -0.9 912,898 + DZA65_RS04375 0.63 -0.8 912,898 + -0.0 912,899 - DZA65_RS04375 0.63 -1.8 912,912 + DZA65_RS04375 0.65 +0.8 912,912 + DZA65_RS04375 0.65 -0.2 912,912 + DZA65_RS04375 0.65 -0.6 912,913 - DZA65_RS04375 0.65 -2.0 912,913 - DZA65_RS04375 0.65 -2.0 912,913 - DZA65_RS04375 0.65 -1.0 912,913 - DZA65_RS04375 0.65 -1.3 912,913 - DZA65_RS04375 0.65 +0.3 912,913 - DZA65_RS04375 0.65 -2.8 912,920 + DZA65_RS04375 0.66 +0.8 912,920 + DZA65_RS04375 0.66 +0.6 912,920 + DZA65_RS04375 0.66 -0.9 912,920 + DZA65_RS04375 0.66 +0.6 912,961 - DZA65_RS04375 0.71 -2.2 912,961 - DZA65_RS04375 0.71 +0.1 912,961 - DZA65_RS04375 0.71 -0.4 912,961 - DZA65_RS04375 0.71 +0.7 912,961 - DZA65_RS04375 0.71 +0.6 913,063 + DZA65_RS04375 0.84 +0.6 913,067 - DZA65_RS04375 0.85 +1.1 913,137 + -2.9 913,137 + +1.5 913,137 + +0.1 913,137 + +1.0 913,138 - +0.4 913,177 - +0.6 913,177 - +0.2 913,183 + +0.2 913,183 + +0.7 913,183 + -1.2 913,184 - -1.2 913,184 - -0.9 913,184 - -0.0 913,184 - +0.6 913,184 - +0.4 913,184 - -0.4 913,184 - -1.2 913,184 - +0.8 913,184 - -0.0 913,184 - -0.4 913,184 - +0.1 913,184 - +2.1 913,184 - +1.6 913,186 + +1.4 913,186 + -2.7 913,186 + -0.2 913,187 - -1.8 913,187 - +0.3 913,200 + -0.7 913,200 + +0.3 913,201 - +0.3 913,201 - +1.3 913,205 + +1.4 913,206 - +0.8 913,206 - +0.3 913,224 + -0.3
Or see this region's nucleotide sequence