Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04105

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04095 and DZA65_RS04100 are separated by 96 nucleotidesDZA65_RS04100 and DZA65_RS04105 overlap by 4 nucleotidesDZA65_RS04105 and DZA65_RS04110 overlap by 4 nucleotidesDZA65_RS04110 and DZA65_RS04115 are separated by 2 nucleotides DZA65_RS04095: DZA65_RS04095 - terminase, at 864,999 to 865,700 _RS04095 DZA65_RS04100: DZA65_RS04100 - head completion/stabilization protein, at 865,797 to 866,249 _RS04100 DZA65_RS04105: DZA65_RS04105 - phage tail protein, at 866,246 to 866,743 _RS04105 DZA65_RS04110: DZA65_RS04110 - hypothetical protein, at 866,740 to 867,444 _RS04110 DZA65_RS04115: DZA65_RS04115 - DUF2586 domain-containing protein, at 867,447 to 868,562 _RS04115 Position (kb) 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 865.390 kb on + strand, within DZA65_RS04095at 865.420 kb on + strand, within DZA65_RS04095at 865.420 kb on + strand, within DZA65_RS04095at 865.420 kb on + strand, within DZA65_RS04095at 865.441 kb on - strand, within DZA65_RS04095at 865.441 kb on - strand, within DZA65_RS04095at 865.441 kb on - strand, within DZA65_RS04095at 865.483 kb on + strand, within DZA65_RS04095at 865.483 kb on + strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.529 kb on - strand, within DZA65_RS04095at 865.664 kb on + strandat 865.698 kb on + strandat 865.698 kb on + strandat 865.698 kb on + strandat 865.699 kb on - strandat 865.706 kb on + strandat 865.707 kb on - strandat 865.785 kb on + strandat 865.822 kb on - strandat 865.834 kb on + strandat 865.834 kb on + strandat 865.834 kb on + strandat 865.835 kb on - strandat 865.835 kb on - strandat 866.006 kb on + strand, within DZA65_RS04100at 866.007 kb on - strand, within DZA65_RS04100at 866.245 kb on + strandat 866.245 kb on + strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.466 kb on + strand, within DZA65_RS04105at 866.501 kb on + strand, within DZA65_RS04105at 866.501 kb on + strand, within DZA65_RS04105at 866.501 kb on + strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.783 kb on + strandat 866.783 kb on + strandat 866.783 kb on + strandat 866.783 kb on + strandat 866.784 kb on - strandat 866.784 kb on - strandat 866.784 kb on - strandat 866.784 kb on - strandat 866.784 kb on - strandat 866.834 kb on + strand, within DZA65_RS04110at 866.835 kb on - strand, within DZA65_RS04110at 866.835 kb on - strand, within DZA65_RS04110at 866.835 kb on - strand, within DZA65_RS04110at 867.016 kb on + strand, within DZA65_RS04110at 867.017 kb on - strand, within DZA65_RS04110at 867.021 kb on - strand, within DZA65_RS04110at 867.021 kb on - strandat 867.021 kb on - strand, within DZA65_RS04110at 867.076 kb on + strand, within DZA65_RS04110at 867.076 kb on + strand, within DZA65_RS04110at 867.275 kb on + strand, within DZA65_RS04110at 867.275 kb on + strand, within DZA65_RS04110at 867.276 kb on - strand, within DZA65_RS04110at 867.285 kb on + strand, within DZA65_RS04110at 867.286 kb on - strand, within DZA65_RS04110at 867.286 kb on - strand, within DZA65_RS04110at 867.286 kb on - strand, within DZA65_RS04110at 867.286 kb on - strand, within DZA65_RS04110at 867.286 kb on - strand, within DZA65_RS04110at 867.323 kb on + strand, within DZA65_RS04110at 867.323 kb on + strand, within DZA65_RS04110at 867.323 kb on + strand, within DZA65_RS04110at 867.323 kb on + strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.369 kb on + strand, within DZA65_RS04110at 867.487 kb on + strandat 867.487 kb on + strandat 867.487 kb on + strandat 867.487 kb on + strandat 867.487 kb on + strandat 867.488 kb on - strandat 867.488 kb on - strandat 867.488 kb on - strandat 867.488 kb on - strandat 867.488 kb on - strandat 867.488 kb on - strandat 867.488 kb on - strandat 867.528 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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865,390 + DZA65_RS04095 0.56 -0.3
865,420 + DZA65_RS04095 0.60 -0.4
865,420 + DZA65_RS04095 0.60 -0.4
865,420 + DZA65_RS04095 0.60 -0.0
865,441 - DZA65_RS04095 0.63 -1.0
865,441 - DZA65_RS04095 0.63 +0.2
865,441 - DZA65_RS04095 0.63 -0.1
865,483 + DZA65_RS04095 0.69 -1.0
865,483 + DZA65_RS04095 0.69 +1.3
865,484 - DZA65_RS04095 0.69 -2.0
865,484 - DZA65_RS04095 0.69 -0.4
865,484 - DZA65_RS04095 0.69 +0.3
865,484 - DZA65_RS04095 0.69 +0.8
865,484 - DZA65_RS04095 0.69 +0.2
865,529 - DZA65_RS04095 0.75 +0.9
865,664 + -0.4
865,698 + +0.3
865,698 + +1.1
865,698 + +2.2
865,699 - -1.4
865,706 + -0.2
865,707 - +1.1
865,785 + +0.1
865,822 - +0.4
865,834 + -0.2
865,834 + -0.3
865,834 + -0.5
865,835 - +0.6
865,835 - +1.5
866,006 + DZA65_RS04100 0.46 -1.3
866,007 - DZA65_RS04100 0.46 -2.0
866,245 + -2.4
866,245 + +0.6
866,246 - +0.2
866,246 - -0.2
866,246 - -0.4
866,246 - +1.6
866,246 - -0.7
866,246 - -0.4
866,466 + DZA65_RS04105 0.44 -0.2
866,501 + DZA65_RS04105 0.51 -1.0
866,501 + DZA65_RS04105 0.51 -1.1
866,501 + DZA65_RS04105 0.51 -0.1
866,502 - DZA65_RS04105 0.51 +0.7
866,502 - DZA65_RS04105 0.51 -1.2
866,502 - DZA65_RS04105 0.51 -0.2
866,502 - DZA65_RS04105 0.51 -2.2
866,502 - DZA65_RS04105 0.51 -0.2
866,502 - DZA65_RS04105 0.51 -0.8
866,783 + +1.4
866,783 + -0.2
866,783 + -0.4
866,783 + -2.1
866,784 - -0.0
866,784 - -0.4
866,784 - -0.4
866,784 - +0.3
866,784 - -1.2
866,834 + DZA65_RS04110 0.13 -2.4
866,835 - DZA65_RS04110 0.13 -0.7
866,835 - DZA65_RS04110 0.13 +0.0
866,835 - DZA65_RS04110 0.13 +0.3
867,016 + DZA65_RS04110 0.39 +2.2
867,017 - DZA65_RS04110 0.39 -1.5
867,021 - DZA65_RS04110 0.40 -0.1
867,021 - -0.4
867,021 - DZA65_RS04110 0.40 +1.6
867,076 + DZA65_RS04110 0.48 -1.1
867,076 + DZA65_RS04110 0.48 +0.2
867,275 + DZA65_RS04110 0.76 +0.3
867,275 + DZA65_RS04110 0.76 -2.0
867,276 - DZA65_RS04110 0.76 -0.6
867,285 + DZA65_RS04110 0.77 -1.4
867,286 - DZA65_RS04110 0.77 -0.6
867,286 - DZA65_RS04110 0.77 -0.4
867,286 - DZA65_RS04110 0.77 -0.6
867,286 - DZA65_RS04110 0.77 -0.4
867,286 - DZA65_RS04110 0.77 -1.0
867,323 + DZA65_RS04110 0.83 -0.9
867,323 + DZA65_RS04110 0.83 +0.4
867,323 + DZA65_RS04110 0.83 -2.2
867,323 + DZA65_RS04110 0.83 +0.9
867,324 - DZA65_RS04110 0.83 +0.1
867,324 - DZA65_RS04110 0.83 -1.1
867,324 - DZA65_RS04110 0.83 -0.2
867,324 - DZA65_RS04110 0.83 +0.5
867,324 - DZA65_RS04110 0.83 +1.1
867,324 - DZA65_RS04110 0.83 +0.1
867,324 - DZA65_RS04110 0.83 +1.6
867,324 - DZA65_RS04110 0.83 +0.3
867,369 + DZA65_RS04110 0.89 -0.9
867,487 + +0.7
867,487 + -0.5
867,487 + +0.5
867,487 + -2.6
867,487 + -0.0
867,488 - +2.2
867,488 - -0.6
867,488 - +0.1
867,488 - -2.0
867,488 - -0.6
867,488 - +1.1
867,488 - -0.2
867,528 - -1.7

Or see this region's nucleotide sequence