Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04005 and DZA65_RS04010 are separated by 195 nucleotides DZA65_RS04010 and DZA65_RS04015 are separated by 129 nucleotides DZA65_RS04015 and DZA65_RS04020 are separated by 32 nucleotides DZA65_RS04020 and DZA65_RS04025 are separated by 84 nucleotides DZA65_RS04025 and DZA65_RS04030 are separated by 19 nucleotides
DZA65_RS04005: DZA65_RS04005 - site-specific integrase, at 848,771 to 849,862
_RS04005
DZA65_RS04010: DZA65_RS04010 - hypothetical protein, at 850,058 to 850,621
_RS04010
DZA65_RS04015: DZA65_RS04015 - hypothetical protein, at 850,751 to 850,972
_RS04015
DZA65_RS04020: DZA65_RS04020 - phage regulatory CII family protein, at 851,005 to 851,514
_RS04020
DZA65_RS04025: DZA65_RS04025 - hypothetical protein, at 851,599 to 851,895
_RS04025
DZA65_RS04030: DZA65_RS04030 - hypothetical protein, at 851,915 to 852,244
_RS04030
Position (kb) 850
851 Strain fitness (log2 ratio) -2
-1
0
1
2 at 849.756 kb on - strand at 849.756 kb on - strand at 849.773 kb on - strand at 849.850 kb on + strand at 849.850 kb on + strand at 849.850 kb on + strand at 849.862 kb on + strand at 849.862 kb on + strand at 849.862 kb on + strand at 849.862 kb on + strand at 849.862 kb on + strand at 849.862 kb on + strand at 849.863 kb on - strand at 849.874 kb on + strand at 849.874 kb on + strand at 849.890 kb on + strand at 849.895 kb on - strand at 849.921 kb on + strand at 849.921 kb on + strand at 849.921 kb on + strand at 849.921 kb on + strand at 849.921 kb on + strand at 849.921 kb on + strand at 849.921 kb on + strand at 849.921 kb on + strand at 849.922 kb on - strand at 849.922 kb on - strand at 849.922 kb on - strand at 849.922 kb on - strand at 849.922 kb on - strand at 849.922 kb on - strand at 849.922 kb on - strand at 849.978 kb on + strand at 849.979 kb on - strand at 850.013 kb on + strand at 850.013 kb on + strand at 850.014 kb on - strand at 850.014 kb on - strand at 850.014 kb on - strand at 850.014 kb on - strand at 850.014 kb on - strand at 850.014 kb on - strand at 850.014 kb on - strand at 850.060 kb on - strand at 850.060 kb on - strand at 850.062 kb on - strand at 850.750 kb on + strand at 850.750 kb on + strand at 850.751 kb on - strand at 850.765 kb on - strand at 850.805 kb on + strand, within DZA65_RS04015 at 850.805 kb on + strand, within DZA65_RS04015 at 850.805 kb on + strand, within DZA65_RS04015 at 850.805 kb on + strand, within DZA65_RS04015 at 850.806 kb on - strand, within DZA65_RS04015 at 850.806 kb on - strand, within DZA65_RS04015 at 850.806 kb on - strand, within DZA65_RS04015 at 850.806 kb on - strand, within DZA65_RS04015 at 850.806 kb on - strand, within DZA65_RS04015 at 850.829 kb on - strand, within DZA65_RS04015 at 850.867 kb on - strand, within DZA65_RS04015 at 850.892 kb on - strand, within DZA65_RS04015 at 851.026 kb on - strand at 851.288 kb on - strand, within DZA65_RS04020 at 851.288 kb on - strand, within DZA65_RS04020 at 851.288 kb on - strand, within DZA65_RS04020 at 851.288 kb on - strand, within DZA65_RS04020 at 851.288 kb on - strand, within DZA65_RS04020 at 851.350 kb on - strand, within DZA65_RS04020 at 851.350 kb on - strand, within DZA65_RS04020 at 851.350 kb on - strand, within DZA65_RS04020 at 851.567 kb on - strand at 851.620 kb on - strand at 851.620 kb on - strand at 851.643 kb on - strand, within DZA65_RS04025 at 851.643 kb on - strand, within DZA65_RS04025 at 851.648 kb on + strand at 851.681 kb on + strand, within DZA65_RS04025 at 851.726 kb on - strand, within DZA65_RS04025 at 851.736 kb on + strand, within DZA65_RS04025 at 851.776 kb on + strand, within DZA65_RS04025 at 851.777 kb on - strand, within DZA65_RS04025 at 851.777 kb on - strand, within DZA65_RS04025 at 851.777 kb on - strand, within DZA65_RS04025 at 851.777 kb on - strand, within DZA65_RS04025 at 851.779 kb on + strand, within DZA65_RS04025 at 851.780 kb on - strand, within DZA65_RS04025 at 851.780 kb on - strand, within DZA65_RS04025 at 851.806 kb on - strand, within DZA65_RS04025 at 851.894 kb on - strand at 851.894 kb on - strand at 851.901 kb on - strand at 851.901 kb on - strand at 851.914 kb on + strand at 851.914 kb on + strand at 851.914 kb on + strand at 851.914 kb on + strand at 851.914 kb on + strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.946 kb on + strand at 851.971 kb on + strand, within DZA65_RS04030
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 849,756 - +0.1 849,756 - +1.4 849,773 - -1.3 849,850 + -1.2 849,850 + -0.2 849,850 + -0.2 849,862 + +0.3 849,862 + +1.5 849,862 + +1.0 849,862 + -2.0 849,862 + +2.0 849,862 + +0.2 849,863 - -0.4 849,874 + +0.1 849,874 + -1.0 849,890 + -0.6 849,895 - +0.1 849,921 + -1.0 849,921 + +0.3 849,921 + +0.3 849,921 + -0.1 849,921 + -1.0 849,921 + -1.0 849,921 + -0.7 849,921 + -0.1 849,922 - +0.0 849,922 - -2.1 849,922 - +1.0 849,922 - +0.6 849,922 - -0.4 849,922 - -2.6 849,922 - +0.6 849,978 + -0.7 849,979 - +0.2 850,013 + -0.1 850,013 + -1.3 850,014 - -1.4 850,014 - -1.7 850,014 - +0.3 850,014 - -0.5 850,014 - +1.7 850,014 - +0.7 850,014 - +0.9 850,060 - +0.8 850,060 - +0.5 850,062 - +1.3 850,750 + -1.4 850,750 + -0.5 850,751 - +0.0 850,765 - +1.8 850,805 + DZA65_RS04015 0.24 -1.3 850,805 + DZA65_RS04015 0.24 -1.5 850,805 + DZA65_RS04015 0.24 -0.8 850,805 + DZA65_RS04015 0.24 -1.7 850,806 - DZA65_RS04015 0.25 +1.4 850,806 - DZA65_RS04015 0.25 -0.5 850,806 - DZA65_RS04015 0.25 -0.6 850,806 - DZA65_RS04015 0.25 -0.4 850,806 - DZA65_RS04015 0.25 -2.4 850,829 - DZA65_RS04015 0.35 -0.6 850,867 - DZA65_RS04015 0.52 -0.3 850,892 - DZA65_RS04015 0.64 -0.1 851,026 - -0.7 851,288 - DZA65_RS04020 0.55 -1.0 851,288 - DZA65_RS04020 0.55 -0.9 851,288 - DZA65_RS04020 0.55 -0.1 851,288 - DZA65_RS04020 0.55 -1.1 851,288 - DZA65_RS04020 0.55 +1.8 851,350 - DZA65_RS04020 0.68 -0.5 851,350 - DZA65_RS04020 0.68 +0.8 851,350 - DZA65_RS04020 0.68 +0.9 851,567 - +1.0 851,620 - +0.7 851,620 - -0.3 851,643 - DZA65_RS04025 0.15 +1.4 851,643 - DZA65_RS04025 0.15 +0.3 851,648 + +1.6 851,681 + DZA65_RS04025 0.28 -0.4 851,726 - DZA65_RS04025 0.43 -1.6 851,736 + DZA65_RS04025 0.46 -2.2 851,776 + DZA65_RS04025 0.60 -0.3 851,777 - DZA65_RS04025 0.60 -0.5 851,777 - DZA65_RS04025 0.60 -0.6 851,777 - DZA65_RS04025 0.60 -0.3 851,777 - DZA65_RS04025 0.60 -0.5 851,779 + DZA65_RS04025 0.61 +0.1 851,780 - DZA65_RS04025 0.61 +1.2 851,780 - DZA65_RS04025 0.61 -0.1 851,806 - DZA65_RS04025 0.70 -0.2 851,894 - +0.3 851,894 - +0.3 851,901 - -0.5 851,901 - +1.0 851,914 + -1.0 851,914 + +1.4 851,914 + -0.1 851,914 + +0.0 851,914 + -1.1 851,915 - +0.3 851,915 - +1.0 851,915 - +1.4 851,915 - +0.0 851,915 - -1.2 851,915 - -1.9 851,915 - -1.7 851,915 - +0.9 851,946 + -1.4 851,971 + DZA65_RS04030 0.17 +0.2
Or see this region's nucleotide sequence